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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008643 ID=TCONS_00008643|Name=TCONS_00008643|organism=Clytia hemisphaerica|type=transcript|length=1384bp
GGACTATAATTTTGGTAACTTGGAAACTGGGTAAAAATCGTCTAAAATAA
ATCCATTCcttcttatttcaaatttagtTTCATCATATTTTTATTACAAT
ATTAGATGATCTAAATGAACACcccaaaaagtaaaatattataatcaaaa
tatttcagATATTATAAGCAAATATACTAAgtataaaaatttttgttacc
ctaCAATAATAATTTTACAGTTATTTAGAAATAAATTGTAAATAACTGTA
TTTAAATTGACCACAAAATTAAATatcaaaagtcaaaacaaaatacaatt
ccaaaaaatgaaacCCAAGAAAAGAAATCGAGCTgatatttaagcgtttt
taaaacctataaatgggcttttccagaaaaaaattgaatatggggggtgc
aCCCCCCTCCCAGACATAGTGAATTATGACCACCGGACAACACAAATCTT
ACCCCggaaattcaaaattacccttaaacaggcaaattttgcagattttt
caatATCCCCAGgcaaaatattcaatatatcctccatcccTCGTGTACAA
AaactttctggaaaagcccaatcatTCTTTAAATGATGCAGGAATAAAAA
GCAAGGCCTTGAAGAATAAATAATTCGAATTTGTACAATCCTAAGACCAA
AAGGATGAACCTTCAGTGGGAACTTTccattcaattttgtttttgagact
CAAAAGATACaagacaaaatgtaagaaactaaactaaaaaatAAGTTGGG
ATAAAATCTCTAAattcataataataataataaattctaaaatgtcTATT
TTTTGTGCTTCTTGGATTTCATACAGAAGATTTATGATATTCTGTTCAAC
ATGCTAAAACTTTGTATAGATATTTGTATTCTGTGTTTAAAGATCTTAGT
GTCTTTTTTTCAACGTTTGAATAAATTACCATCTTTTCTTAGCTTCATCC
ATACTGGCGCCACCGGGCCCAAAAGCGACGACCAAAAGGAGACCGCCGAT
AACTGACATGGTCTGGAAGAAATCGTATTTCAAGAAATCACGCATAGCTT
TCCATTGAGGCACCATCCAGAAAGCATTTTCGTATACGTTGATACCCATT
AAGAAAACAACCATGACAAGGGCGGAGAGCTTGGTCTTGTAACCAACGGT
AACTAACATAATCAAAATGGtaccaaagagattgaaaaCAATATGGAAGA
AAGACATGTCGAATTTCAAGAGAGTGAGGTACATGAGGAGTAACAAAACA
CGACCAGTCAGTTGCATGTATGTTTTGGGTTTGTTGTGACTATCCAGTGT
GGGGACACCAGCGAAAACGGTGCGAGCTTCTTGGCGACATTCAGCCAACA
ATAAAATCAAACCACCAGACAGGGCAAGACTCCT Run BLAST on NCBI transcript from alignment at sc0000086:917377..918816- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008643 ID=TCONS_00008643|Name=TCONS_00008643|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at sc0000086:917377..918816- (Clytia hemisphaerica)
GGACTATAATTTTGGTAACTTGGAAACTGGGTAAAAATCGTCTAAAATAA
ATCCATTCCTTCTTATTTCAAATTTAGTTTCATCATATTTTTATTACAAT
ATTAGATGATCTAAATGAACACCCCAAAAAGTAAAATATTATAATCAAAA
TATTTCAGATATTATAAGCAAATATACTAAGTATAAAAATTTTTGTTACC
CTACAATAATAATTTTACAGTTATTTAGAAATAAATTGTAAATAACTGTA
TTTAAATTGACCACAAAATTAAATATCAAAAGTCAAAACAAAATACAATT
CCAAAAAATGAAACCCAAGAAAAGAAATCGAGCTGATATTTAAGCGTTTT
TAAAACCTATAAATGGGCTTTTCCAGAAAAAAATTGAATATGGGGGGTGC
ACCCCCCTCCCAGACATAGTGAATTATGACCACCGGACAACACAAATCTT
ACCCCGGAAATTCAAAATTACCCTTAAACAGGCAAATTTTGCAGATTTTT
CAATATCCCCAGGCAAAATATTCAATATATCCTCCATCCCTCGTGTACAA
AAACTTTCTGGAAAAGCCCAATCATTCTTTAAATGATGCAGGAATAAAAA
GCAAGGCCTTGAAGAATAAATAATTCGAATTTGTACAATCCTAAGACCAA
AAGGATGAACCTTCAGTGGGAACTTTCCATTCAATTTTGTTTTTGAGACT
CAAAAGATACAAGACAAAATGTAAGAAACTAAACTAAAAAATAAGTTGGG
ATAAAATCTCTAAATTCATAATAATAATAATAAATTCTAAAATGTCTATT
TTTTGTGCTTCTTGGATTTCATACAGAAGATTTATGATATTCTGTTCAAC
ATGCTAAAACTTTGTATAGATATTNACAGAAGATTTATGATGATATTCTG
TTCAACATGCTAAAACTTTGTATAGATATTTGTATTCTGTGTTTAAAGAT
CTTAGTGTCTTTTTTTCAACGTTTGAATAAATTACCATCTTTTCTTAGCT
TCATCCATACTGGCGCCACCGGGCCCAAAAGCGACGACCAAAAGGAGACC
GCCGATAACTGACATGGTCTGGAAGAAATCGTATTTCAAGAAATCACGCA
TAGCTTTCCATTGAGGCACCATCCAGAAAGCATTTTCGTATACGTTGATA
CCCATTAAGAAAACAACCATGACAAGGGCGGAGAGCTTGGTCTTGTAACC
AACGGTAACTAACATAATCAAAATGGTACCAAAGAGATTGAAAACAATAT
GGAAGAAAGACATGTCGAATTTCAAGAGAGTGAGGTACATGAGGAGTAAC
AAAACACGACCAGTCAGTTGCATGTATGTTTTGGGTTTGTTGTGACTATC
CAGTGTGGGGACACCAGCGAAAACGGTGCGAGCTTCTTGGCGACATTCAG
CCAACAATAAAATCAAACCACCAGACAGGGCAAGACTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008643-exon-sc0000086-1575043694:917967..918816 | TCONS_00008643-exon-sc0000086-1575043694:917967..918816 | Clytia hemisphaerica | exon |
| TCONS_00008643-exon-sc0000086-1575043694:917377..917910 | TCONS_00008643-exon-sc0000086-1575043694:917377..917910 | Clytia hemisphaerica | exon |
| TCONS_00008643-exon-sc0000086-1510915933:917967..918816 | TCONS_00008643-exon-sc0000086-1510915933:917967..918816 | Clytia hemisphaerica | exon |
| TCONS_00008643-exon-sc0000086-1510915933:917377..917910 | TCONS_00008643-exon-sc0000086-1510915933:917377..917910 | Clytia hemisphaerica | exon |
| TCONS_00008643-exon-sc0000086-1491911889:917967..918816 | TCONS_00008643-exon-sc0000086-1491911889:917967..918816 | Clytia hemisphaerica | exon |
| TCONS_00008643-exon-sc0000086-1491911889:917377..917910 | TCONS_00008643-exon-sc0000086-1491911889:917377..917910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:917377..918816 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002995 | Surf4 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00008643 vs. Swiss-Prot (Human)
Match: SURF4 (Surfeit locus protein 4 OS=Homo sapiens GN=SURF4 PE=1 SV=3) HSP 1 Score: 171.014 bits (432), Expect = 5.694e-49 Identity = 92/138 (66.67%), Postives = 110/138 (79.71%), Query Frame = -1
Query: 929 ECRQEARTVFAGVPTLDSHNKPKTYMQLTGRVXXXXXXXXXLKFDMSFFHIVFNLFGTILIMLVTVGYKTKLSALVMVVFLMGINVYENAFWMVPQWKAMRDFLKYDFFQTMSVIGGLLLVVAFGPGGASMDEAKKRW 1342
E R E +++FAGVPT+ + PK YMQL GRVLL+LM++TLL FD SFF IV N+ GT L++LV +G+KTKL+AL +VV+L INVY NAFW +P +K M DFLKYDFFQTMSVIGGLLLVVA GPGG SMDE KK W
Sbjct: 133 ESRSEGKSMFAGVPTM-RESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVVALGPGGVSMDEKKKEW 269
The following BLAST results are available for this feature:
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