TCONS_00008641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008641
Unique NameTCONS_00008641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008641 ID=TCONS_00008641|Name=TCONS_00008641|organism=Clytia hemisphaerica|type=transcript|length=1672bp
CGAAAGTCCAAAGTACAAGAGATTAGCATTTAGATGTGTAGAAAGACgtg
tttgattttgatttgtGTTTGTGGAATGATTTATCGTGTTATATACTCTT
TACGTGTTGTGACAAGGGAAAACGATACACTGAACAGTGAAAAACTTACA
TCAAGATACATACAATCTCGTACTCTGGAAAAATACTACGTTGGAAAACT
ACATCAAATACTGTAACTTAAAATGAGACCAATTCGAATTTACGAATTCT
TGTATCATGTTTTGCTGTCTGGATTTTTCAGTTACGTTACATTTGCACAT
GATTTTCCATCTATTCGAAATCTAACTGAAACACCATTGAAGCAGCATAA
ATTCCTGACCATTCATTGTTTGTATTTCCAAGTCTTGTATTATGGATTTG
CGACATTGGCTGACTTGAAATATTTCTTAATCGGAACAAGTAATAATTCA
TACGGCACACGAAAAATCCGTGATTACCTGTTTGCGAGTATTATCGTTCC
CATCGCGTGTACCGTTTGTATCCAATTCTGGGGCGTTTACTGGTATGATC
CAACGCTGGTCTGCAAACGAACGGCGATTAATTGCATCTTGGATTTTACG
TTTCACAACCACGCTACCCATACATTACCGATATTTGCAACCTTTATTGA
GCTATTGATTGTGTTTCACCAAGCACCAAGCAGCTCAAAGAAGGGAGCCC
TGGGTTGGTGTCTATACATCACTTTCTATATATCCTTTGTTTATGCTGTC
CATCACAGATTTGGTTTCTGGGTCTACCCATTCTTAGGTGATTTTTCGCC
TATTGAAAGAGCTGCTTTTTTGATTTGTAATTTTGGGATTTTTGGCCTGG
TATGTTGTTTGATTGGTATCTGGTTGATTCACAACTATTGGAAAAAGAAA
GACAATGACAATAAAAAGAGAAACTAAGACTGTTTGGTTTTTAATTTGAT
TGAGATTTCCGTAAACTGCTGACTTTAGATTACGAGCTTTTACATTAAGA
CTGGTATCCCAACTAACACACAactgttttgtttgttttgtttcaacgtt
tatctgatgttcataacgtccatttaacgttagatgaacgttgaaacaac
gttgtgtgctagctgggatATTAAATTTNttgtttcaacgtttatctgat
gttcataacgtccatttaacgttagatgaacgttgaaacaacgttgtgtg
ctagctgggatATTAAATTTAGCAAGACAATGATGAAATTCCTTGGAAGA
GGAAGATTTTGCATTCTTTATCAATTATTCTAGAAATAAATCAGCGCAAA
TCCTTATCGAAACCTCGGAGCTAAAATGAATAATTCTATTGATAAGTACT
GATTGGATTTTGATCCCGTTTTTGTTCATCAGGCATCATCAGGCATTGTA
TGTTGTAGTAAACACCGGAAGAAAATATCGTATTTCGTGTAATCCTTCCG
CTtagtttttggcatttttatttttccgaaTCTTTTGTTACTCTAAGACG
ATTCTAAATTTCTTCCATTTAAAATTACATCTTAAATAAAAACCGTACAT
TTATAGAAGGACTCCTACCTTTTCCCTTCTATCTTAATTGTGAGAGCTTC
AGGGACAGTTTCAGCCACGCACATCGCACAGGCGGACCTGGTCTGGATGC
TTAATCCCAGAATCCCTAGTTA
Run BLAST on NCBI

protein sequence of TCONS_00008641-protein

>TCONS_00008641-protein ID=TCONS_00008641-protein|Name=TCONS_00008641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MRPIRIYEFLYHVLLSGFFSYVTFAHDFPSIRNLTETPLKQHKFLTIHCL
YFQVLYYGFATLADLKYFLIGTSNNSYGTRKIRDYLFASIIVPIACTVCI
QFWGVYWYDPTLVCKRTAINCILDFTFHNHATHTLPIFATFIELLIVFHQ
APSSSKKGALGWCLYITFYISFVYAVHHRFGFWVYPFLGDFSPIERAAFL
ICNFGIFGLVCCLIGIWLIHNYWKKKDNDNKKRN
Run BLAST on NCBI

transcript from alignment at sc0000086:849109..850861-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008641 ID=TCONS_00008641|Name=TCONS_00008641|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at sc0000086:849109..850861- (Clytia hemisphaerica)
CGAAAGTCCAAAGTACAAGAGATTAGCATTTAGATGTGTAGAAAGACGTG
TTTGATTTTGATTTGTGTTTGTGGAATGATTTATCGTGTTATATACTCTT
TACGTGTTGTGACAAGGGAAAACGATACACTGAACAGTGAAAAACTTACA
TCAAGATACATACAATCTCGTACTCTGGAAAAATACTACGTTGGAAAACT
ACATCAAATACTGTAACTTAAAATGAGACCAATTCGAATTTACGAATTCT
TGTATCATGTTTTGCTGTCTGGATTTTTCAGTTACGTTACATTTGCACAT
GATTTTCCATCTATTCGAAATCTAACTGAAACACCATTGAAGCAGCATAA
ATTCCTGACCATTCATTGTTTGTATTTCCAAGTCTTGTATTATGGATTTG
CGACATTGGCTGACTTGAAATATTTCTTAATCGGAACAAGTAATAATTCA
TACGGCACACGAAAAATCCGTGATTACCTGTTTGCGAGTATTATCGTTCC
CATCGCGTGTACCGTTTGTATCCAATTCTGGGGCGTTTACTGGTATGATC
CAACGCTGGTCTGCAAACGAACGGCGATTAATTGCATCTTGGATTTTACG
TTTCACAACCACGCTACCCATACATTACCGATATTTGCAGCCTTTATTGA
GCTATTGATTGTGTTTCACCAAGCACCAANGTTTCACAACCACGCTACCC
ATACATTACCGATATTTGCAACCTTTATTGAGCTATTGATTGTGTTTCAC
CAAGCACCAAGCAGCTCAAAGAAGGGAGCCCTGGGTTGGTGTCTATACAT
CACTTTCTATATATCCTTTGTTTATGCTGTCCATCACAGATTTGGTTTCT
GGGTCTACCCATTCTTAGGTGATTTTTCGCCTATTGAAAGAGCTGCTTTT
TTGATTTGTAATTTTGGGATTTTTGGCCTGGTATGTTGTTTGATTGGTAT
CTGGTTGATTCACAACTATTGGAAAAAGAAAGACAATGACAATAAAAAGA
GAAACTAAGACTGTTTGGTTTTTAATTTGATTGAGATTTCCGTAAACTGC
TGACTTTAGATTACGAGCTTTTACATTAAGACTGGTATCCCAACTAACAC
ACAACTGTTTTGTTTGTTTTGTTTCAACGTTTATCTGATGTTCATAACGT
CCATTTAACGTTAGATGAACGTTGAAACAACGTTGTGTGCTAGCTGGGAT
ATTAAATTTNTTGTTTCAACGTTTATCTGATGTTCATAACGTCCATTTAA
CGTTAGATGAACGTTGAAACAACGTTGTGTGCTAGCTGGGATATTAAATT
TAGCAAGACAATGATGAAATTCCTTGGAAGAGGAAGATTTTGCATTCTTT
ATCAATTATTCTAGAAATAAATCAGCGCAAATCCTTATCGAAACCTCGGA
GCTAAAATGAATAATTCTATTGATAAGTACTGATTGGATTTTGATCCCGT
TTTTGTTCATCAGGCATCATCAGGCATTGTATGTTGTAGTAAACACCGGA
AGAAAATATCGTATTTCGTGTAATCCTTCCGCTTAGTTTTTGGCATTTTT
ATTTTTCCGAATCTTTTGTTACTCTAAGACGATTCTAAATTTCTTCCATT
TAAAATTACATCTTAAATAAAAACCGTACATTTATAGAAGGACTCCTACC
TTTTCCCTTCTATCTTAATTGTGAGAGCTTCAGGGACAGTTTCAGCCACG
CACATCGCACAGGCGGACCTGGTCTGGATGCTTAATCCCAGAATCCCTAG
TTA

Coding sequence (CDS) from alignment at sc0000086:849109..850861-

>TCONS_00008641 ID=TCONS_00008641|Name=TCONS_00008641|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at sc0000086:849109..850861- (Clytia hemisphaerica)
ATTACCGATATTTGCAACCTTTATTGAGCTATTGATTGTGTTTCACCAAG
CACCAAGCAGCTCAAAGAAGGGAGCCCTGGGTTGGTGTCTATACATCACT
TTCTATATATCCTTTGTTTATGCTGTCCATCACAGATTTGGTTTCTGGGT
CTACCCATTCTTAGGTGATTTTTCGCCTATTGAAAGAGCTGCTTTTTTGA
TTTGTAATTTTGGGATTTTTGGCCTGGTATGTTGTTTGATTGGTATCTGG
TTGATTCACAACTATTGGAAAAAGAAAGACAATGACAATAAAAAGAGAAA
CTAAATGAGACCAATTCGAATTTACGAATTCTTGTATCATGTTTTGCTGT
CTGGATTTTTCAGTTACGTTACATTTGCACATGATTTTCCATCTATTCGA
AATCTAACTGAAACACCATTGAAGCAGCATAAATTCCTGACCATTCATTG
TTTGTATTTCCAAGTCTTGTATTATGGATTTGCGACATTGGCTGACTTGA
AATATTTCTTAATCGGAACAAGTAATAATTCATACGGCACACGAAAAATC
CGTGATTACCTGTTTGCGAGTATTATCGTTCCCATCGCGTGTACCGTTTG
TATCCAATTCTGGGGCGTTTACTGGTATGATCCAACGCTGGTCTGCAAAC
GAACGGCGATTAATTGCATCTTGGATTTTACGTTTCACAACCACGCTACC
CATACATTACCGATATTTGCAACCTTTATTGAGCTATTGATTGTGTTTCA
CCAAGCACCAAGCAGCTCAAAGAAGGGAGCCCTGGGTTGGTGTCTATACA
TCACTTTCTATATATCCTTTGTTTATGCTGTCCATCACAGATTTGGTTTC
TGGGTCTACCCATTCTTAGGTGATTTTTCGCCTATTGAAAGAGCTGCTTT
TTTGATTTGTAATTTTGGGATTTTTGGCCTGGTATGTTGTTTGATTGGTA
TCTGGTTGATTCACAACTATTGGAAAAAGAAAGACAATGACAATAAAAAG
AGAAACTAAATGAGACCAATTCGAATTTACGAATTCTTGTATCATGTTTT
GCTGTCTGGATTTTTCAGTTACGTTACATTTGCACATGATTTTCCATCTA
TTCGAAATCTAACTGAAACACCATTGAAGCAGCATAAATTCCTGACCATT
CATTGTTTGTATTTCCAAGTCTTGTATTATGGATTTGCGACATTGGCTGA
CTTGAAATATTTCTTAATCGGAACAAGTAATAATTCATACGGCACACGAA
AAATCCGTGATTACCTGTTTGCGAGTATTATCGTTCCCATCGCGTGTACC
GTTTGTATCCAATTCTGGGGCGTTTACTGGTATGATCCAACGCTGGTCTG
CAAACGAACGGCGATTAATTGCATCTTGGATTTTACGTTTCACAACCACG
CTACCCATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004841XLOC_004841Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008641-proteinTCONS_00008641-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008641-exon-sc0000086-1575043694:850239..850861TCONS_00008641-exon-sc0000086-1575043694:850239..850861Clytia hemisphaericaexon
TCONS_00008641-exon-sc0000086-1575043694:849109..850157TCONS_00008641-exon-sc0000086-1575043694:849109..850157Clytia hemisphaericaexon
TCONS_00008641-exon-sc0000086-1510915933:850239..850861TCONS_00008641-exon-sc0000086-1510915933:850239..850861Clytia hemisphaericaexon
TCONS_00008641-exon-sc0000086-1510915933:849109..850157TCONS_00008641-exon-sc0000086-1510915933:849109..850157Clytia hemisphaericaexon
TCONS_00008641-exon-sc0000086-1491911889:850239..850861TCONS_00008641-exon-sc0000086-1491911889:850239..850861Clytia hemisphaericaexon
TCONS_00008641-exon-sc0000086-1491911889:849109..850157TCONS_00008641-exon-sc0000086-1491911889:849109..850157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:849109..850861 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58081	3.5813	1.94099	1.93518	5.52674	5.12025	30.2243	38.8077	21.3084	28.5708	29.8861	11.5753	12.554	8.54689	14.4104	16.406	12.9139	13.3994	9.43406	14.2034	19.8706	20.8798	12.7438	15.0873	0.763727	0.267291	28.6498	23.378	13.663	7.3763
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006838Far-17a_AIG1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00008641 vs. Swiss-Prot (Human)
Match: AIG1 (Androgen-induced gene 1 protein OS=Homo sapiens GN=AIG1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.732e-16
Identity = 55/163 (33.74%), Postives = 73/163 (44.79%), Query Frame = 1 
Query:  349 KFLTIHCLYFQVLYYGFATLADLKYFLIGTSNNSYGTRKI------RDYLFASIIVPIACTVCIQFWGVYWYDPTLVCKRTAINCILDFTFHNHATHTLPIFATFIELLIVFHQAPSSSKKGALGWCLYITFYISFVYAVHHRFGFWVYPFLGDFSPIERAAF 819
            KFLT   L  Q +++G   L DL   L   S N    R++      RD++ A +  P+   V   FW +Y YD  ++  +   N I  +   NH  HT  +    IE+    HQ PS S  G    C +   YI +V  VHH  G WVYPFL    P  R  F
Sbjct:   40 KFLTFIDLVIQAVFFGICVLTDLSSLLTRGSGNQEQERQLKKLISLRDWMLAVLAFPVGVFVVAVFWIIYAYDREMIYPKLLDNFIPGWL--NHGMHTTVLPFILIEMRTSHHQYPSRSS-GLTAICTFSVGYILWVCWVHHVTGMWVYPFLEHIGPGARIIF 199
The following BLAST results are available for this feature:
BLAST of TCONS_00008641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AIG11.732e-1633.74Androgen-induced gene 1 protein OS=Homo sapiens GN... [more]
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