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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008639 ID=TCONS_00008639|Name=TCONS_00008639|organism=Clytia hemisphaerica|type=transcript|length=1500bp
GAGTCAGAGTCTCTTCAGAGAAAGGCTGACCAGGGCTGAATCATCAGGCT
GAAATCATATTTTGAGGCGTACGAGAAGGTGAACTTGATTGGCATTGAAC
ACATACTCCTATTTATTTGCCCGATAACTGACCATGTTCATTGACATCTA
TCTATCTCAATActtattattttgaatatttatatttttcagtAAAAATA
TAATGAATGGTAGACAGGCAGGAAAAATAACAAACGGTGTTCATGCAATG
GCTATCCAAGATCCTGATGACCTTGGAGATGATGATTTCGAAGCATTAGA
TCAAGAGATGGATCAGTTAAATTCTGAACTCGATAaaatggaaaattggt
caactTCTTTACACGATAAAGTCGCTGACCTTTTAAAAGAGACTCAGGAG
AAAAACAAAGCTATTGCAAGCGCTTATACCGAAGAAAAATCGTCGGCTAA
TAACGAGAATTCAACGACCGTAAACGACAATGAAACGAGCGATAAGACAA
CAAACGATAATGATAAATCAACGAcggataaaaatgattctaaaaAGAAA
GATGATAAATAATATACAGAAATTTCGTATTTGGAGAACTGGTTTTCGCG
TAATTCATGGATATCGAGTAAAAACATTATATTTTACGAATTAATACACG
ATAGGGATACTAGAAACGTACATTTAACTTAAATATCTCAAGTATCACTT
CTTCTGCTCTATGACTCAGATATTTTATCGAATTAATTtattatatcaat
ttttatACACATAAGTTTTGTTACTAAGTAATGTTTATCGCAATTTTGAA
TTATATAGAAAACAATTATGACAATTTACATAACTATACCATCATACTCT
CATAAATGCATAAATTCCGAGACAGATGTACGTCAAGGCAAacggttcaa
tctcaaaataagtgtctaagaaaaatattttactttgcTAATGTTAAAAC
TTAGAGATCGGCACTTTTCTCTTGTAGATGGGATCCTTCTCCACTACAAG
AAAAGGGCCAATCTTACAATTTTAAGTTAGGAAAgcaaactaaagtctgt
ctcaaaataatttgcagctgagacataAATGGCGTAACTTTTGATGAATT
TGAAtgaagttgcgattttgtgctcgttgaaaagatatttgtgagtggaa
tattatcagcaaagaaaaatttggaaattaaagaaaaatgaaaatgaaaa
atgaagaagaaaaaaatcaacttcttgtagaaatgcggtatgattaccat
tttcacaggagtgattcttcaatcttagaccatcatcactgtgaaaagat
ttttcaaaaatattcattcaatcagaAGATATCACAAAAAGTTTGTTATT
GGTTGATTGACAATAGgcttttttttgtcgtttttgttagacacttattt
tgagattggaaCTTTTACCTTGTCAGGGGCCTCGTCAGCAGCGATTTGTG
CTCTACATGAGTAAACAACTTTCACAACCAACTTCCAATCTAAATTATGG Run BLAST on NCBI protein sequence of TCONS_00008639-protein >TCONS_00008639-protein ID=TCONS_00008639-protein|Name=TCONS_00008639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MNGRQAGKITNGVHAMAIQDPDDLGDDDFEALDQEMDQLNSELDKMENWS
TSLHDKVADLLKETQEKNKAIASAYTEEKSSANNENSTTVNDNETSDKTT
NDNDKSTTDKNDSKKKDDK Run BLAST on NCBI transcript from alignment at sc0000086:816572..818424- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008639 ID=TCONS_00008639|Name=TCONS_00008639|organism=Clytia hemisphaerica|type=transcript|length=1853bp|location=Sequence derived from alignment at sc0000086:816572..818424- (Clytia hemisphaerica)
GAGTCAGAGTCTCTTCAGAGAAAGGCTGACCAGGGCTGAATCATCAGGCT
GAAATCATATTTTGAGGCGTACGAGAAGGTGAACTTGATTGGCATTGAAC
ACATACTCCTATTTATTTGCCCGATAACTGACCATGTTCATTGACATCTA
TCTATCTCAATACTTATTATTTTGAATATTTATATTTTTCAGTAAAAATA
TAATGAATGGTAGACAGGCAGGAAAAATAACAAACGGTGTTCATGCAATG
GCTATCCAAGATCCTGATGACCTTGGAGATGATGGTATATATTTGTCTTG
CCTCTAACTCTCGTTTTCTACACACATCACAAATTTTGCAAGGAGCTAAA
CTAAGGGTTTTCTAACTTTAATTTGAAGTGTCTATTTAGGTTAGAAAAAA
TTTTGAATGCTCTTATAAAAAAACGTATATTGCTTTATTATAGACTTAAT
AGATTGGCTAACGGCTTACAGATTTTTAGTGAAAATGAGACAAATTTTAA
AGCTGACTTAAAAAAGCTCTTAACTGGATATACTTCTATTATAACGAGGT
TTCCGATTCAGTTAAGTAGATCAGTGGTTAGAAAAGGTGTTATCATTTGC
GAAAGTATTTTAAATGTAATATATTTCCATTTTTCAGATTTCGAAGCATT
AGATCAAGAGATGGATCAGTTAAATTCTGAACTCGATAAAATGGAAAATT
GGTCAACTTCTTTACACGATAAAGTCGCTGACCTTTTAAAAGAGACTCAG
GAGAAAAACAAAGCTATTGCAAGCGCTTATACCGAAGAAAAATCGTCGGC
TAATAACGAGAATTCAACGACCGTAAACGACAATGAAACGAGCGATAAGA
CAACAAACGATAATGATAAATCAACGACGGATAAAAATGATTCTAAAAAG
AAAGATGATAAATAATATACAGAAATTTCGTATTTGGAGAACTGGTTTTC
GCGTAATTCATGGATATCGAGTAAAAACATTATATTTTACGAATTAATAC
ACGATAGGGATACTAGAAACGTACATTTAACTTAAATATCTCAAGTATCA
CTTCTTCTGCTCTATGACTCAGATATTTTATCGAATTAATTTATTATATC
AATTTTTATACACATAAGTTTTGTTACTAAGTAATGTTTATCGCAATTTT
GAATTATATAGAAAACAATTATGACAATTTACATAACTATACCATCATAC
TCTCATAAATGCATAAATTCCGAGACAGATGTACGTCAAGGCAAACGGTT
CAATCTCAAAATAAGTGTCTAAGAAAAATATTTTACTTTGCTAATGTTAA
AACTTAGAGATCGGCACTTTTCTCTTGTAGATGGGATCCTTCTCCACTAC
AAGAAAAGGGCCAATCTTACAATTTTAAGTTAGGAAAGCAAACTAAAGTC
TGTCTCAAAATAATTTGCAGCTGAGACATAAATGGCGTAACTTTTGATGA
ATTTGAATGAAGTTGCGATTTTGTGCTCGTTGAAAAGATATTTGTGAGTG
GAATATTATCAGCAAAGAAAAATTTGGAAATTAAAGAAAAATGAAAATGA
AAAATGAAGAAGAAAAAAATCAACTTCTTGTAGAAATGCGGTATGATTAC
CATTTTCACAGGAGTGATTCTTCAATCTTAGACCATCATCACTGTGAAAA
GATTTTTCAAAAATATTCATTCAATCAGAAGATATCACAAAAAGTTTGTT
ATTGGTTGATTGACAATAGGCTTTTTTTTGTCGTTTTTGTTAGACACTTA
TTTTGAGATTGGAACTTTTACCTTGTCAGGGGCCTCGTCAGCAGCGATTT
GTGCTCTACATGAGTAAACAACTTTCACAACCAACTTCCAATCTAAATTA
TGG Coding sequence (CDS) from alignment at sc0000086:816572..818424- >TCONS_00008639 ID=TCONS_00008639|Name=TCONS_00008639|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000086:816572..818424- (Clytia hemisphaerica)
ATTTCGAAGCATTAGATCAAGAGATGGATCAGTTAAATTCTGAACTCGAT
AAAATGGAAAATTGGTCAACTTCTTTACACGATAAAGTCGCTGACCTTTT
AAAAGAGACTCAGGAGAAAAACAAAGCTATTGCAAGCGCTTATACCGAAG
AAAAATCGTCGGCTAATAACGAGAATTCAACGACCGTAAACGACAATGAA
ACGAGCGATAAGACAACAAACGATAATGATAAATCAACGACGGATAAAAA
TGATTCTAAAAAGAAAGATGATAAATAAATGAATGGTAGACAGGCAGGAA
AAATAACAAACGGTGTTCATGCAATGGCTATCCAAGATCCTGATGACCTT
GGAGATGATGATTTCGAAGCATTAGATCAAGAGATGGATCAGTTAAATTC
TGAACTCGATAAAATGGAAAATTGGTCAACTTCTTTACACGATAAAGTCG
CTGACCTTTTAAAAGAGACTCAGGAGAAAAACAAAGCTATTGCAAGCGCT
TATACCGAAGAAAAATCGTCGGCTAATAACGAGAATTCAACGACCGTAAA
CGACAATGAAACGAGCGATAAGACAACAAACGATAATGATAAATCAACGA
CGGATAAAAATGATTCTAAAAAGAAAGATGATAAATAAATGAATGGTAGA
CAGGCAGGAAAAATAACAAACGGTGTTCATGCAATGGCTATCCAAGATCC
TGATGACCTTGGAGATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008639-exon-sc0000086-1575043694:818141..818424 | TCONS_00008639-exon-sc0000086-1575043694:818141..818424 | Clytia hemisphaerica | exon |
| TCONS_00008639-exon-sc0000086-1575043694:816572..817787 | TCONS_00008639-exon-sc0000086-1575043694:816572..817787 | Clytia hemisphaerica | exon |
| TCONS_00008639-exon-sc0000086-1510915933:818141..818424 | TCONS_00008639-exon-sc0000086-1510915933:818141..818424 | Clytia hemisphaerica | exon |
| TCONS_00008639-exon-sc0000086-1510915933:816572..817787 | TCONS_00008639-exon-sc0000086-1510915933:816572..817787 | Clytia hemisphaerica | exon |
| TCONS_00008639-exon-sc0000086-1491911889:818141..818424 | TCONS_00008639-exon-sc0000086-1491911889:818141..818424 | Clytia hemisphaerica | exon |
| TCONS_00008639-exon-sc0000086-1491911889:816572..817787 | TCONS_00008639-exon-sc0000086-1491911889:816572..817787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:816572..818424 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR022788 | UPF0184 |
Blast
The following BLAST results are available for this feature:
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