Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008631 ID=TCONS_00008631|Name=TCONS_00008631|organism=Clytia hemisphaerica|type=transcript|length=2500bpRun BLAST on NCBI protein sequence of TCONS_00008631-protein >TCONS_00008631-protein ID=TCONS_00008631-protein|Name=TCONS_00008631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp MESDSNILELIHSHLIESHLLQTARTLEKETGEKFATPELRLKHIVNTYQRun BLAST on NCBI transcript from alignment at sc0000086:600822..622873- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008631 ID=TCONS_00008631|Name=TCONS_00008631|organism=Clytia hemisphaerica|type=transcript|length=22052bp|location=Sequence derived from alignment at sc0000086:600822..622873- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000086:600822..622873- >TCONS_00008631 ID=TCONS_00008631|Name=TCONS_00008631|organism=Clytia hemisphaerica|type=CDS|length=18900bp|location=Sequence derived from alignment at sc0000086:600822..622873- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008631 vs. Swiss-Prot (Human)
Match: NOLC1 (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.166e-21 Identity = 44/75 (58.67%), Postives = 62/75 (82.67%), Query Frame = 2 Query: 1367 STPFQRVKEDLIQIDEKLTDNSYEAKKGSTNGYGEKANDVLKKTKGKSFRQEKTKKKRGNYTGGTITTDVSSIYF 1591 S+PF+RV+E+ I++D ++ DNS++AK+G+ +GE+AN VLK TKGKSFR EKTKKKRG+Y GG+I+ V+SI F Sbjct: 622 SSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKF 696 The following BLAST results are available for this feature:
BLAST of TCONS_00008631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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