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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008624 ID=TCONS_00008624|Name=TCONS_00008624|organism=Clytia hemisphaerica|type=transcript|length=999bp
ATGAATATTATGGCTTGGTTGTTCGTGATAATTTGGTTTGTTTGCTATTT
GTTATCACTCTGTAATCAAATCACAATCTCAAACAAAATGTTGATTTATG
GTATCATTCACGTGGTGTGGGCGTTTCTATTATTGATCGCCGGAGCTGTG
ATTGCAGATGCAGCGGCCGCTTTAAAGAAAATTTGCGACGCTTTCGGAAT
CCAATGCACTGTGGCAAAGCTCGAAGCTGCAGCTGCATTTGGTATAATAA
CATCCTTCATCTTCTTGGGTGATGGTATTTTACATATTTATCAACACAAA
AAACCAAAGACAACGTCCTCAATTAGCGCCACGGAGAACGGCGACGCCGT
AAAGCCATCACCACCACCGAATCAAACAAGCAACTCTGAGGAAATAAAAA
GCTAGGACATCTCATCACTTCTTTCTCTTAGTTTGTGTCAAACCCCCTCC
AGATGTAATGTTGCTGACGTTATTAATGGGAttgctcacccctgtctcag
tgccccggtgacACTTTTTTCACAGTGGGAATATGGAAATTTCGAAACCC
CAATTGCAATATAAATTCCCAGCTCAAAAAACCCAGTACGaatggtttgt
tttttattgtatttaaaAATGgggtcaatttcccagtggagctGAAATTG
TATTCTTTCCCACTAAGACGCATTTTTAACCacattttccagtggggaag
CTGTCCCAAGGAGTCTGTAACACAAGGGTGTGATTGTAAGATGGAGGAGT
ATTTCTTGTAAAATACGGTATGTTGTGCAGTGTTTTAACTGTTAAACTAT
TTTTGCTATGTACAAAGTgtccttagaatgttcttattctcaccattttg
tgagttcTTTTGTGTAATTCAATAATAaattaggtgttttagagtccgta
taaccttaaaatattcttaacatgttcataatattttggccatcgaagcc
ttatgttcttatatactttgttcttataaaaaaaggtgtaactgtagca Run BLAST on NCBI protein sequence of TCONS_00008624-protein >TCONS_00008624-protein ID=TCONS_00008624-protein|Name=TCONS_00008624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MNIMAWLFVIIWFVCYLLSLCNQITISNKMLIYGIIHVVWAFLLLIAGAV
IADAAAALKKICDAFGIQCTVAKLEAAAAFGIITSFIFLGDGILHIYQHK
KPKTTSSISATENGDAVKPSPPPNQTSNSEEIKS Run BLAST on NCBI transcript from alignment at sc0000086:527232..529152- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008624 ID=TCONS_00008624|Name=TCONS_00008624|organism=Clytia hemisphaerica|type=transcript|length=1921bp|location=Sequence derived from alignment at sc0000086:527232..529152- (Clytia hemisphaerica)
ATGAATATTATGGCTTGGTTGTTCGTGATAATTTGGTTTGTTTGCTATTT
GTTATCACTCTGTAATCAAATCACAATCTCAAACAAAATGTTGATTGTAA
GTATCGTACAATGTGTCAGGATAAAAACAAGACAGATTTTAAATAAATGC
TACAAAATTTCCACCCGAATGTTTTCAGAAGCATTCACCTCCTATAAATG
CCCGTCTACCAATTGAAAAGAATTTCAAGAGTCGAGAATTTTCAGAAAGT
TTTTGATGACTCACAGAGATACCTATATCCTTGACACACACAACCCAAGG
TCCAAGAGTTAGTACACCTTCTCAAGAACCTTCTCGCAGTAAAGCTAACT
CAGACAGGAAATGGGCTTCACAAGACAGATTAATAAAAGCTCAAATTTGG
CTGACAATTGGCTGAAATTTGAGACCGAAAAGCCTTTTTATACCTCGTTA
AGAAAGAAATAGCGAGATTATGTATTCGAGATAAATCGAGGGCGACGGTA
TAAAGCAGATTTAACATGTCTCCAAAATCACCGTCCACTTTGCTTGATGA
CGATAAAAACATCAAAATACCGTCGTCTGTTTAGGTGAGCAAAGGCGATA
TAGAGCCGTACATCAACTATCGACTTTGTTTTGTATCATTTCACTTACCG
TCGCCCTCGATATCCTCCGATACATAAACTCGGTAATCTGTCTGAGACGA
AAGAACTTTGTATATCGTTTTCATATTTTAAACTTTGTTGTTTTTAACTT
CAGTATGGTATCATTCACGTGGTGTGGGCGTTTCTATTATTGATCGCCGG
AGCTGTGATTGCAGATGCAGCGGCCGCTTTAAAGAAAATTTGCGACGCTT
TCGGAATCCAATGCACTGTGGCAAAGCTCGAAGCTGCAGCTGTAAGTCTA
ACAAATAATCACAAATAAAACTAAAAATTCATCCGCTTTAAGAAGAGACT
CGTCAAAAACAATTCTCCTTGTAAATCATAACCTGTCCCCTTAAATACCG
ATAGTGCCGCTAAGATTTGATGGGTGTATGGATTTTGATTTCTTATATGA
CTCTTGAATGTCCCTAACAAAATTCTTACTCTTTCACACTGGTGAGGAGC
CTCTCCTTCGTTGTGATAAAAAACGTTTACAAATAGTTTCATTTTCTTTT
CTACAGGCATTTGGTATAATAACATCCTTCATCTTCTTGGGTGATGGTAT
TTTACATATTTATCAACACAAAAAACCAAAGACAACGTCCTCAATTAGCG
CCACGGAGAACGGCGACGCCGTAAAGCCATCACCACCACCGAATCAAACA
AGCAACTCTGAGGAAATAAAAAGCTAGGACATCTCATCACTTCTTTCTCT
TAGTTTGTGTCAAACCCCCTCCAGATGTAATGTTGCTGACGTTATTAATG
GGATTGCTCACCCCTGTCTCAGTGCCCCGGTGACACTTTTTTCACAGTGG
GAATATGGAAATTTCGAAACCCCAATTGCAATATAAATTCCCAGCTCAAA
AAACCCAGTACGAATGGTTTGTTTTTTATTGTATTTAAAAATGGGGTCAA
TTTCCCAGTGGAGCTGAAATTGTATTCTTTCCCACTAAGACGCATTTTTA
ACCACATTTTCCAGTGGGGAAGCTGTCCCAAGGAGTCTGTAACACAAGGG
TGTGATTGTAAGATGGAGGAGTATTTCTTGTAAAATACGGTATGTTGTGC
AGTGTTTTAACTGTTAAACTATTTTTGCTATGTACAAAGTGTCCTTAGAA
TGTTCTTATTCTCACCATTTTGTGAGTTCTTTTGTGTAATTCAATAATAA
ATTAGGTGTTTTAGAGTCCGTATAACCTTAAAATATTCTTAACATGTTCA
TAATATTTTGGCCATCGAAGCCTTATGTTCTTATATACTTTGTTCTTATA
AAAAAAGGTGTAACTGTAGCA Coding sequence (CDS) from alignment at sc0000086:527232..529152- >TCONS_00008624 ID=TCONS_00008624|Name=TCONS_00008624|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000086:527232..529152- (Clytia hemisphaerica)
GCATTTGGTATAATAACATCCTTCATCTTCTTGGGTGATGGTATTTTACA
TATTTATCAACACAAAAAACCAAAGACAACGTCCTCAATTAGCGCCACGG
AGAACGGCGACGCCGTAAAGCCATCACCACCACCGAATCAAACAAGCAAC
TCTGAGGAAATAAAAAGCTAGTATGGTATCATTCACGTGGTGTGGGCGTT
TCTATTATTGATCGCCGGAGCTGTGATTGCAGATGCAGCGGCCGCTTTAA
AGAAAATTTGCGACGCTTTCGGAATCCAATGCACTGTGGCAAAGCTCGAA
GCTGCAGCTATGAATATTATGGCTTGGTTGTTCGTGATAATTTGGTTTGT
TTGCTATTTGTTATCACTCTGTAATCAAATCACAATCTCAAACAAAATGT
TGATTGCATTTGGTATAATAACATCCTTCATCTTCTTGGGTGATGGTATT
TTACATATTTATCAACACAAAAAACCAAAGACAACGTCCTCAATTAGCGC
CACGGAGAACGGCGACGCCGTAAAGCCATCACCACCACCGAATCAAACAA
GCAACTCTGAGGAAATAAAAAGCTAGTATGGTATCATTCACGTGGTGTGG
GCGTTTCTATTATTGATCGCCGGAGCTGTGATTGCAGATGCAGCGGCCGC
TTTAAAGAAAATTTGCGACGCTTTCGGAATCCAATGCACTGTGGCAAAGC
TCGAAGCTGCAGCTATGAATATTATGGCTTGGTTGTTCGTGATAATTTGG
TTTGTTTGCTATTTGTTATCACTCTGTAATCAAATCACAATCTCAAACAA
AATGTTGATTGCATTTGGTATAATAACATCCTTCATCTTCTTGGGTGATG
GTATTTTACATATTTATCAACACAAAAAACCAAAGACAACGTCCTCAATT
AGCGCCACGGAGAACGGCGACGCCGTAAAGCCATCACCACCACCGAATCA
AACAAGCAACTCTGAGGAAATAAAAAGCTAGTATGGTATCATTCACGTGG
TGTGGGCGTTTCTATTATTGATCGCCGGAGCTGTGATTGCAGATGCAGCG
GCCGCTTTAAAGAAAATTTGCGACGCTTTCGGAATCCAATGCACTGTGGC
AAAGCTCGAAGCTGCAGCTATGAATATTATGGCTTGGTTGTTCGTGATAA
TTTGGTTTGTTTGCTATTTGTTATCACTCTGTAATCAAATCACAATCTCA
AACAAAATGTTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008624-exon-sc0000086-1575043694:529057..529152 | TCONS_00008624-exon-sc0000086-1575043694:529057..529152 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1575043694:528262..528399 | TCONS_00008624-exon-sc0000086-1575043694:528262..528399 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1575043694:527232..527996 | TCONS_00008624-exon-sc0000086-1575043694:527232..527996 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1510915933:529057..529152 | TCONS_00008624-exon-sc0000086-1510915933:529057..529152 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1510915933:528262..528399 | TCONS_00008624-exon-sc0000086-1510915933:528262..528399 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1510915933:527232..527996 | TCONS_00008624-exon-sc0000086-1510915933:527232..527996 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1491911889:529057..529152 | TCONS_00008624-exon-sc0000086-1491911889:529057..529152 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1491911889:528262..528399 | TCONS_00008624-exon-sc0000086-1491911889:528262..528399 | Clytia hemisphaerica | exon |
| TCONS_00008624-exon-sc0000086-1491911889:527232..527996 | TCONS_00008624-exon-sc0000086-1491911889:527232..527996 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:527232..529152 - |
Blast
The following BLAST results are available for this feature:
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