TCONS_00008611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008611
Unique NameTCONS_00008611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008611 ID=TCONS_00008611|Name=TCONS_00008611|organism=Clytia hemisphaerica|type=transcript|length=1402bp
ATTCAAACGGACAATTTATGGGAGATTCTGAACGTGCTCGATATATAAAG
AAATATCAGAATCTTCTCCAACCCGAGGAGAGTGTTGACATTTTCTCTCG
AAAAGGTGTTTTGAAATACAAGAAACCAGAACTAGACGAGGAGGACCGTC
ATTATTGGCAAACAAGGAAAACAGGCGAGGTAAACAATGATAGTGAAGGT
AGAGGTCGTTCTGTTGAAGAAAAACAAGATAGTCCCGGATTCGTTCGATC
TAACGAGGAGAATAATCAGGAAAGAGGCCACTCTCACACACCAGATGAAA
AGAACCACAAATATGTCTACTTCAGAGACGACAAGATTTATATCAAGGAT
CCAACAATGTTTTTGAGAAAACCTGCAAATGATATACCGATGGATCGTGA
AGAAAGTGAAGGTTTGAGACATTCTCAGGATGAGGACGAAgaaaaaagct
ttacaaatcaGAATGATCAAGAATCCCAAGAAATGAGAGGAGATGCTAGA
TCTACCACAATGAAAATGAGAGATGGAGCTTCCAATCCAACTGCCAAATT
CATCAAAAACCAAAATGAAGCTCTAACAAGCTTGGGAATGGCAAATAAAG
CAGAACCAAGATCGAAAAATAATCCAACTGCTAAATTCACCACAAgccaa
aacaaagttttaacaAGCCTCGGTTTGATATCGGGATCAGATCGATCATC
AATGGTGAATGAAGCAGGAACCAAAAACACGGTGGAAGAAGCTGCATCTA
AACATGAAATGATTCAAACTAACCAAGATGCTATTAACAAGATTCCAATA
CAATCACCAGATATTCAGAATCAAAAAGTTACAACAACAAATCAGATGAC
TGACCAAGAAGAAGCTGCTGTAAACTCTGTGGAAAAGATGTCTTCTTCCA
TAAATGCCATGAATGATCTTCAAAACGATGTCTTTGGAAGCAAAGAAGCT
GACGGTCAATATCTCATCAAAATAAGaaacttgCTCGGCGAAATTACATT
TCTAAAGGAAGAGATCAGCTCAATGAAAAGAGACAATGTTTACACCACCA
GAGACAAAGATAAAATGGAGAAGGAgttacaacaaaaacaaaatctacTG
AATAAACTTCAAACTAAACGCAAAGAAATCGCAAGACCAGCAGCGAATAT
GAAACATAGTAAGGCTTTCAAACGTAGCTTCAAGAAGCTTGCAAGGAATC
AAAAACTACATCAGCGACATTACCAtcgacatttgttttgataagaCTTA
ATGTTCGAAAGTATTGTTTGTTTAACATTATGAACGAGTAGATGCAGAGT
GGTGCCCGGGAGTTCAGGTTTACCAAAACATCAATTCAAGAAAAGGCTAT
TCTTTATGGACATTTTCCTTTCTCAGATTTCATGGAATTTTGAATATGCG
CT
Run BLAST on NCBI

protein sequence of TCONS_00008611-protein

>TCONS_00008611-protein ID=TCONS_00008611-protein|Name=TCONS_00008611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
SNGQFMGDSERARYIKKYQNLLQPEESVDIFSRKGVLKYKKPELDEEDRH
YWQTRKTGEVNNDSEGRGRSVEEKQDSPGFVRSNEENNQERGHSHTPDEK
NHKYVYFRDDKIYIKDPTMFLRKPANDIPMDREESEGLRHSQDEDEEKSF
TNQNDQESQEMRGDARSTTMKMRDGASNPTAKFIKNQNEALTSLGMANKA
EPRSKNNPTAKFTTSQNKVLTSLGLISGSDRSSMVNEAGTKNTVEEAASK
HEMIQTNQDAINKIPIQSPDIQNQKVTTTNQMTDQEEAAVNSVEKMSSSI
NAMNDLQNDVFGSKEADGQYLIKIRNLLGEITFLKEEISSMKRDNVYTTR
DKDKMEKELQQKQNLLNKLQTKRKEIARPAANMKHSKAFKRSFKKLARNQ
KLHQRHYHRHLF
Run BLAST on NCBI

transcript from alignment at sc0000086:427434..429275-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008611 ID=TCONS_00008611|Name=TCONS_00008611|organism=Clytia hemisphaerica|type=transcript|length=1842bp|location=Sequence derived from alignment at sc0000086:427434..429275- (Clytia hemisphaerica)
ATTCAAACGGACAATTTATGGGAGATTCTGAACGTGCTCGATATATAAAG
AAATATCAGAATCTTCTCCAACCCGAGGAGAGTGTTGACATTTTCTCTCG
AAAAGGTGTTTTGAAATACAAGAAACCAGAACTAGACGAGGAGGACCGTC
ATTATTGGCAAACAAGGAAAACAGGCGAGGTAAACAATGATAGTGAAGGT
AGAGGTCGTTCTGTTGAAGAAAAACAAGATAGTCCCGGATTCGTTCGATC
TAACGAGGAGAATAATCAGGAAAGAGGCCACTCTCACACACCAGATGAAA
AGAACCACAAATATGTCTACTTCAGAGACGACAAGATTTATATCAAGGAT
CCAACAATGTTTTTGAGAAAACCTGCAAATGATATACCGATGGATCGTGA
AGAAAGTGAAGGTTTGAGACATTCTCAGGATGAGGACGAAGAAAAAAGCT
TTACAAATCAGAATGATCAAGAATCCCAAGAAATGAGAGGAGATGCTAGA
TCTACCACAATGAAAATGAGAGATGGAGCTTCCAATCCAACTGCCAAATT
CATCAAAAACCAAAATGAAGCTCTAACAAGCTTGGGAATGGCAAATAAAG
CAGAACCAAGATCGAAAAATAATCCAACTGCTAAATTCACCACAAGCCAA
AACAAAGTTTTAACAAGCCTCGGTTTGATATCGGGATCAGATCGATCATC
AATGGTGAATGAAGCAGGAACCAAAAACACGGTGGAAGAAGCTGCATCTA
AACATGAAATGATTCAAACTAACCAAGATGCTATTAACAAGATTCCAATA
CAATCACCAGATATTCAGAATCAAAAAGTTACAACAACAAATCAGATGAC
TGACCAAGAAGAAGCTGCTGTAAACTCTGTGGAAAAGATGTCTTCTTCCA
TAAATGCCATGAATGATCTTCAAAACGATGTCTTTGGAAGCAAAGAAGCT
GACGGTCAATATCTCATCAAAATAAGGTATGCAAACAATGACAATTGCAT
TTTGTTCATGTAAATTCCACTTTCGCTCTCACTCCTAGTCGATGTTTATC
TTCAACGTTGGAAAGATAGAATCCGGTTTTGAATATCTTTCCCCGGACAA
GCTCGATGCAATTAAAACTCCATGTCACATCCCTCACCGAATTAGATAAG
TCCGTTAAGAATTTTTCCTGTCAGAAAAAAAAACTTTTAATTCATAAGTC
TCCACTTGAATATTAAGCTGTTTTTAAAGTTTTTGAATTTTGAATATTAA
TCGCTAATTCAAAAAAAGTTTTTAAAACCTTATTGAAATATTAAGATTTA
ACTCCTTTACTTCACCCCAATCAGCTACAAACAAAACTCACAGGGTCGCT
GAGACAGGGTTGGCAACCAAAACTCGGTTGAATCAAGTTGAATATATTTT
TCGTTTTTATTTTCAGAAACTTGCTCGGCGAAATTACATTTCTAAAGGAA
GAGATCAGCTCAATGAAAAGAGACAATGTTTACACCACCAGAGACAAAGA
TAAAATGGAGAAGGAGTTACAACAAAAACAAAATCTACTGAATAAACTTC
AAACTAAACGCAAAGAAATCGCAAGACCAGCAGCGAATATGAAACATAGT
AAGGCTTTCAAACGTAGCTTCAAGAAGCTTGCAAGGAATCAAAAACTACA
TCAGCGACATTACCATCGACATTTGTTTTGATAAGACTTAATGTTCGAAA
GTATTGTTTGTTTAACATTATGAACGAGTAGATGCAGAGTGGTGCCCGGG
AGTTCAGGTTTACCAAAACATCAATTCAAGAAAAGGCTATTCTTTATGGA
CATTTTCCTTTCTCAGATTTCATGGAATTTTGAATATGCGCT

Coding sequence (CDS) from alignment at sc0000086:427434..429275-

>TCONS_00008611 ID=TCONS_00008611|Name=TCONS_00008611|organism=Clytia hemisphaerica|type=CDS|length=2478bp|location=Sequence derived from alignment at sc0000086:427434..429275- (Clytia hemisphaerica)
AAACTTGCTCGGCGAAATTACATTTCTAAAGGAAGAGATCAGCTCAATGA
AAAGAGACAATGTTTACACCACCAGAGACAAAGATAAAATGGAGAAGGAG
TTACAACAAAAACAAAATCTACTGAATAAACTTCAAACTAAACGCAAAGA
AATCGCAAGACCAGCAGCGAATATGAAACATAGTAAGGCTTTCAAACGTA
GCTTCAAGAAGCTTGCAAGGAATCAAAAACTACATCAGCGACATTACCAT
CGACATTTGTTTTGATCAAACGGACAATTTATGGGAGATTCTGAACGTGC
TCGATATATAAAGAAATATCAGAATCTTCTCCAACCCGAGGAGAGTGTTG
ACATTTTCTCTCGAAAAGGTGTTTTGAAATACAAGAAACCAGAACTAGAC
GAGGAGGACCGTCATTATTGGCAAACAAGGAAAACAGGCGAGGTAAACAA
TGATAGTGAAGGTAGAGGTCGTTCTGTTGAAGAAAAACAAGATAGTCCCG
GATTCGTTCGATCTAACGAGGAGAATAATCAGGAAAGAGGCCACTCTCAC
ACACCAGATGAAAAGAACCACAAATATGTCTACTTCAGAGACGACAAGAT
TTATATCAAGGATCCAACAATGTTTTTGAGAAAACCTGCAAATGATATAC
CGATGGATCGTGAAGAAAGTGAAGGTTTGAGACATTCTCAGGATGAGGAC
GAAGAAAAAAGCTTTACAAATCAGAATGATCAAGAATCCCAAGAAATGAG
AGGAGATGCTAGATCTACCACAATGAAAATGAGAGATGGAGCTTCCAATC
CAACTGCCAAATTCATCAAAAACCAAAATGAAGCTCTAACAAGCTTGGGA
ATGGCAAATAAAGCAGAACCAAGATCGAAAAATAATCCAACTGCTAAATT
CACCACAAGCCAAAACAAAGTTTTAACAAGCCTCGGTTTGATATCGGGAT
CAGATCGATCATCAATGGTGAATGAAGCAGGAACCAAAAACACGGTGGAA
GAAGCTGCATCTAAACATGAAATGATTCAAACTAACCAAGATGCTATTAA
CAAGATTCCAATACAATCACCAGATATTCAGAATCAAAAAGTTACAACAA
CAAATCAGATGACTGACCAAGAAGAAGCTGCTGTAAACTCTGTGGAAAAG
ATGTCTTCTTCCATAAATGCCATGAATGATCTTCAAAACGATGTCTTTGG
AAGCAAAGAAGCTGACGGTCAATATCTCATCAAAATAAGAAACTTGCTCG
GCGAAATTACATTTCTAAAGGAAGAGATCAGCTCAATGAAAAGAGACAAT
GTTTACACCACCAGAGACAAAGATAAAATGGAGAAGGAGTTACAACAAAA
ACAAAATCTACTGAATAAACTTCAAACTAAACGCAAAGAAATCGCAAGAC
CAGCAGCGAATATGAAACATAGTAAGGCTTTCAAACGTAGCTTCAAGAAG
CTTGCAAGGAATCAAAAACTACATCAGCGACATTACCATCGACATTTGTT
TTGATCAAACGGACAATTTATGGGAGATTCTGAACGTGCTCGATATATAA
AGAAATATCAGAATCTTCTCCAACCCGAGGAGAGTGTTGACATTTTCTCT
CGAAAAGGTGTTTTGAAATACAAGAAACCAGAACTAGACGAGGAGGACCG
TCATTATTGGCAAACAAGGAAAACAGGCGAGGTAAACAATGATAGTGAAG
GTAGAGGTCGTTCTGTTGAAGAAAAACAAGATAGTCCCGGATTCGTTCGA
TCTAACGAGGAGAATAATCAGGAAAGAGGCCACTCTCACACACCAGATGA
AAAGAACCACAAATATGTCTACTTCAGAGACGACAAGATTTATATCAAGG
ATCCAACAATGTTTTTGAGAAAACCTGCAAATGATATACCGATGGATCGT
GAAGAAAGTGAAGGTTTGAGACATTCTCAGGATGAGGACGAAGAAAAAAG
CTTTACAAATCAGAATGATCAAGAATCCCAAGAAATGAGAGGAGATGCTA
GATCTACCACAATGAAAATGAGAGATGGAGCTTCCAATCCAACTGCCAAA
TTCATCAAAAACCAAAATGAAGCTCTAACAAGCTTGGGAATGGCAAATAA
AGCAGAACCAAGATCGAAAAATAATCCAACTGCTAAATTCACCACAAGCC
AAAACAAAGTTTTAACAAGCCTCGGTTTGATATCGGGATCAGATCGATCA
TCAATGGTGAATGAAGCAGGAACCAAAAACACGGTGGAAGAAGCTGCATC
TAAACATGAAATGATTCAAACTAACCAAGATGCTATTAACAAGATTCCAA
TACAATCACCAGATATTCAGAATCAAAAAGTTACAACAACAAATCAGATG
ACTGACCAAGAAGAAGCTGCTGTAAACTCTGTGGAAAAGATGTCTTCTTC
CATAAATGCCATGAATGATCTTCAAAACGATGTCTTTGGAAGCAAAGAAG
CTGACGGTCAATATCTCATCAAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004818XLOC_004818Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008611-proteinTCONS_00008611-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008611-exon-sc0000086-1575043694:428300..429275TCONS_00008611-exon-sc0000086-1575043694:428300..429275Clytia hemisphaericaexon
TCONS_00008611-exon-sc0000086-1575043694:427434..427859TCONS_00008611-exon-sc0000086-1575043694:427434..427859Clytia hemisphaericaexon
TCONS_00008611-exon-sc0000086-1510915933:428300..429275TCONS_00008611-exon-sc0000086-1510915933:428300..429275Clytia hemisphaericaexon
TCONS_00008611-exon-sc0000086-1510915933:427434..427859TCONS_00008611-exon-sc0000086-1510915933:427434..427859Clytia hemisphaericaexon
TCONS_00008611-exon-sc0000086-1491911889:428300..429275TCONS_00008611-exon-sc0000086-1491911889:428300..429275Clytia hemisphaericaexon
TCONS_00008611-exon-sc0000086-1491911889:427434..427859TCONS_00008611-exon-sc0000086-1491911889:427434..427859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:427434..429275 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.120311	0.158452	3.89979	6.0133	0.576377	0.43457	2.83211	2.1588	3.40181	3.22472	1.95882	6.83186	3.54958	2.58564	0.12645	0.0661603	1.40888	1.47258	1.2616	1.54997	2.36272	2.87805	0.244662	0.130555	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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