TCONS_00008600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008600
Unique NameTCONS_00008600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008600 ID=TCONS_00008600|Name=TCONS_00008600|organism=Clytia hemisphaerica|type=transcript|length=765bp
atttgaaataatttgattttatgtAATTCTTTTCTGAAACATCGTGAATA
AAAATGGACAAGTCACTGATCTTCAACATCCTCgggattttcacgatttt
tgttcaaatgTCTTTGGTGCTCTGTGATGGATACGTAGAGCTTCGATTGT
ATTCTTTGGAAAACAAAGACCATTTGGACCATGGGTTAGGATGTTGCGAC
ACGTGGCCTTGGGGAGTTTGCAGAGGACAATGTGACTCTTATTTCAAAAT
CTGCGTCACTGATTGGACTAGCTCGTCTAAACCGAGAGTATCATGTGGTC
TTGGTAGAAAACAAACAGGGACTTATGATGGAAAGAGCAATATCCAATTC
AATGGTAACCTTGGAAACAATATCCAAAACCCAATGAGATTCCGATTCGA
TGGAAAACTGAATCTTTTCGAAGTCATGGTGACATCATATGACGAAGATA
CTTGGCCAAACCCCGATGATTTGATCGATATTCACACACAAATCGTATAC
GCGAAACATGGTCAATCGAGCCAGAATGCCAATGTCCAAAAATTTGACGT
TAAAGGCCGTGTCAGCTTCTtgaaatttgacgtcaaaacatATTGCGCAC
AAGGCTTCACTGGCGATGATTGTTCTAACGGAATATAGAGATGATAAAAG
TTAttaaattcaaccttccttgtATTTCTTCATTTCAAACAACGTTCGCT
TTTACTTGGGGATACTTAATACCTTTTCCCCAGGAATAGCGACTTTCTTC
CAACAGAAATCTCGC
Run BLAST on NCBI

protein sequence of TCONS_00008600-protein

>TCONS_00008600-protein ID=TCONS_00008600-protein|Name=TCONS_00008600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MDKSLIFNILGIFTIFVQMSLVLCDGYVELRLYSLENKDHLDHGLGCCDT
WPWGVCRGQCDSYFKICVTDWTSSSKPRVSCGLGRKQTGTYDGKSNIQFN
GNLGNNIQNPMRFRFDGKLNLFEVMVTSYDEDTWPNPDDLIDIHTQIVYA
KHGQSSQNANVQKFDVKGRVSFLKFDVKTYCAQGFTGDDCSNGI
Run BLAST on NCBI

transcript from alignment at sc0000086:122077..125362-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008600 ID=TCONS_00008600|Name=TCONS_00008600|organism=Clytia hemisphaerica|type=transcript|length=3286bp|location=Sequence derived from alignment at sc0000086:122077..125362- (Clytia hemisphaerica)
ATTTGAAATAATTTGATTTTATGTAATTCTTTTCTGTAGGTTTCCATAGG
ATCCCAGCTGGCACACAACGTTGTTTTAACGTTCATCTAACGTTATATAG
ACGTTGTGAACGTTATATAGACGTTGAAATAACGTTGTGTGCCAGCTGGG
ATCAGAACAACTTTTTGGATTCTTCTTTTTGTAATGAAGAATGCCTCCTT
TTTCAGTGGTATTAACTGTAAGTGGAAAGGTCGACATGACGGGCGCGCTC
AGCATTGAAACTGGATGAAGGACTTTTCCATTGTTTTAGTTCGGCAATAC
ACATTTTCGACTAGTAGCCGCCATTTGCCGCGCGGCACCCCCCCCCTAAA
CTTGATCCAATCCTTTTTTGACACCTTTTTCTATTGTCTATAGGTGCTAA
ACAAAGACTGGAATGGTTTTAGGGTGGTAAAACGGACAAAAAATGCCCGC
GCGGCAATTGGAAGCTACGGTCGAAAAGGTGTATTGCCCGAGATTTTGTT
TTGCAAAAAAATGGAAGAATCTTTTAATAATGAAATTTTACTATTTCAAA
ACCAAATTTGTATTTTTAAGAATTTGTCATTAGGAAACATCGTGAATAAA
AATGGACAAGTCACTGATCTTCAACATCCTCGGGATTTTCACGATTTTTG
TTCAAATGGTAAGTGGAAGTTTCATCTTCAGCCATATGCATTACCACAGA
TCTATGAAGCCACCCGAAGGGCTAGATGTCGTGCTCTAAGCCATTGCAGG
CAAACTGTTGTTTTCGAAAATCTGCGAAGCTTCTGAATGATTAAGCGCTG
AAATTCTATTATAATGTCACGTGACCTTGGTAGGATTTCCTACCTAGCCA
CGGCACACTTTTCAGCAAGTATCTAGCCCTTCGGGATCTATATCTATGTG
TGCATTATCCGATTAAATAAGAATAAACCATATCAGAACATAAGGCTTCA
ATAGCCAAAATATTCCATATATCCATATTATGATCTTTCAAAGTCCCTCT
TGTTTTTTGCAGTCTTTGGTGCTCTGTGATGGATACGTAGAGCTTCGATT
GTATTCTTTGGAAAACAAAGACCATTTGGACCATGGGTTAGGATGTTGCG
ACACGTGGCCTTGGGGAGTTTGCAGAGGACAATGTGACTCTTATTTCAAA
ATCTGCGTCACTGATTGGACTAGCTCGTCTAAACCGAGGTATAGTACATG
TTTTTATAAGAAAGAATTGTATAAGAACATAAGGCCTCGATGTGGCGAAA
CTATTAAGAACAATTCAGTTAGCTGGGGTAACTAAAGTTGGAGTTTGTCA
AGTATGTGTGGATCCTGCATGCCAAAAGTTAATAATTCTGCCAAGAGACT
AAATTGTTCGAAAATTAACAAACGGGTGAGAGCGTCTTTCAGGACCATAG
AGTATTTGTAAAATGAACTGGTAAGTGATTCTCTCTTTCTTCTAGAGTAT
CATGTGGTCTTGGTAGAAAACAAACAGGGACTTATGATGGAAAGAGCAAT
ATCCAATTCAATGGTAACCTTGGAAACAATATCCAAAACCCAATGAGATT
CCGATTCGATGGAAAACTGGTAAGACATATACGATTATATATACGACATA
TATATTTTTTCAAAATGTCCAAAGTATGAGGTAATCTTTACATGTCTCTG
CCAATCAGAGCTTTACTTGACGTTTGTCGTGACTATTTCTATTTGAATCT
GCTAATAGGAAATTTGTGTATAAGAGCATGTCGAGGATGGGGTGGGATAC
TTTGAGTATGGCGCCGTTCTCTAAATAATACGAGCTTTGATCTACAAAAG
CATATAGATGATTTCACAGTCACTGTCACAAACAACAAAAGGTTTATATG
AAGTTTCCTTTTTTGTTTTGTTTTACTTTGAGACTCAAAGTCTGTATGTT
ATTGAAAATAAAATTAGAACTACCACTTTCTACATTCATCTAAATTTTGT
TTATATTCATGCAATTTGATTCTCAGGACCTGACCTTTATATATCTCTAA
ACCAAAGCTATATTCACCATCTTTGATTGGAATTTTTTTTGGAATTGGTA
CCCGAGATGAAGCCATTGCAATAGTAAAAATTAACATCTAACGGCGCTAC
ATCATCAAAAGTATTTGAGCGAAAGTAGACCTAGCGCCCTCAATGCATTT
ACACCGCTATTGAGTAGTGCCAACATTAGGGTACCACTTTTCGAAAATCT
TCGATCAAAGATTTTGCTTTGCCGGGATTGAGAAACTTGGTCCAGAGATA
TATAAAGGTCAGTGATCAGGACGAGTAAGTAAGAATGCCTCGCGACGCAC
CTGATACTACAGTCTACTTAAAAACAAAAAGTATCGAAGAAAAGGTCCTA
GTGCTCGCTCTGGCTTAGCCTATCACCCGTGTTAAGGTCTACAGTCTGTC
CATTAGCGTGAGTATCATAGTGTATGAAAAATACAAGCTGTGGAGACAAA
CGCCGATTTCATTCAACGCGCAACAAAAGTAACCATAGTAATCATCCCGG
ATATTGGATGAAAATGGCACCAATGAAATCACAAAGAAGAAACGGAGAAA
AGATTCAAAGAATCAAAGCAAATAAACTTGCTTACACAACTTTTCTCCGT
TTCTTCGTGATTTTATTGGTGTCGTTTTCATCCAATATCCGGGATAACTG
TCATGGTGACTTTTGTTGCGCGTTGAATGAAATCGGCGTTTGTCTTCACA
GCTTGTAATATTCATATGCTATGATACTCACGGAAGCAGACAGACAGCTA
GACCTTAGTAATCTAATAGTGAAAGGGATGTGCTCTCCGTCTTCGATTTT
TTGGATATCAATGTAATTAAAACAGGCGCGATAAAATTCTTACAGTTTGT
CTCCATAGCTTAATTTCAGAGAAAGCTGAACTATGTTATTCATGGTTTCT
ATCCATCTGAAATTACTTTTCTGTTCTATAGAATCTTTTCGAAGTCATGG
TGACATCATATGACGAAGATACTTGGCCAAACCCCGATGATTTGATCGAT
ATTCACACACAAATCGTATACGCGAAACATGGTCAATCGAGCCAGAATGC
CAATGTCCAAAAATTTGACGTTAAAGGCCGTGTCAGCTTCTTGAAATTTG
ACGTCAAAACATATTGCGCACAAGGCTTCACTGGCGATGATTGTTCTAAC
GGAATATAGAGATGATAAAAGTTATTAAATTCAACCTTCCTTGTATTTCT
TCATTTCAAACAACGTTCGCTTTTACTTGGGGATACTTAATACCTTTTCC
CCAGGAATAGCGACTTTCTTCCAACAGAAATCTCGC

Coding sequence (CDS) from alignment at sc0000086:122077..125362-

>TCONS_00008600 ID=TCONS_00008600|Name=TCONS_00008600|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0000086:122077..125362- (Clytia hemisphaerica)
AATCTTTTCGAAGTCATGGTGACATCATATGACGAAGATACTTGGCCAAA
CCCCGATGATTTGATCGATATTCACACACAAATCGTATACGCGAAACATG
GTCAATCGAGCCAGAATGCCAATGTCCAAAAATTTGACGTTAAAGGCCGT
GTCAGCTTCTTGAAATTTGACGTCAAAACATATTGCGCACAAGGCTTCAC
TGGCGATGATTGTTCTAACGGAATATAGAGTATCATGTGGTCTTGGTAGA
AAACAAACAGGGACTTATGATGGAAAGAGCAATATCCAATTCAATGGTAA
CCTTGGAAACAATATCCAAAACCCAATGAGATTCCGATTCGATGGAAAAC
TGTCTTTGGTGCTCTGTGATGGATACGTAGAGCTTCGATTGTATTCTTTG
GAAAACAAAGACCATTTGGACCATGGGTTAGGATGTTGCGACACGTGGCC
TTGGGGAGTTTGCAGAGGACAATGTGACTCTTATTTCAAAATCTGCGTCA
CTGATTGGACTAGCTCGTCTAAACCGAGATGGACAAGTCACTGATCTTCA
ACATCCTCGGGATTTTCACGATTTTTGTTCAAATGAATCTTTTCGAAGTC
ATGGTGACATCATATGACGAAGATACTTGGCCAAACCCCGATGATTTGAT
CGATATTCACACACAAATCGTATACGCGAAACATGGTCAATCGAGCCAGA
ATGCCAATGTCCAAAAATTTGACGTTAAAGGCCGTGTCAGCTTCTTGAAA
TTTGACGTCAAAACATATTGCGCACAAGGCTTCACTGGCGATGATTGTTC
TAACGGAATATAGAGTATCATGTGGTCTTGGTAGAAAACAAACAGGGACT
TATGATGGAAAGAGCAATATCCAATTCAATGGTAACCTTGGAAACAATAT
CCAAAACCCAATGAGATTCCGATTCGATGGAAAACTGTCTTTGGTGCTCT
GTGATGGATACGTAGAGCTTCGATTGTATTCTTTGGAAAACAAAGACCAT
TTGGACCATGGGTTAGGATGTTGCGACACGTGGCCTTGGGGAGTTTGCAG
AGGACAATGTGACTCTTATTTCAAAATCTGCGTCACTGATTGGACTAGCT
CGTCTAAACCGAGATGGACAAGTCACTGATCTTCAACATCCTCGGGATTT
TCACGATTTTTGTTCAAATGAATCTTTTCGAAGTCATGGTGACATCATAT
GACGAAGATACTTGGCCAAACCCCGATGATTTGATCGATATTCACACACA
AATCGTATACGCGAAACATGGTCAATCGAGCCAGAATGCCAATGTCCAAA
AATTTGACGTTAAAGGCCGTGTCAGCTTCTTGAAATTTGACGTCAAAACA
TATTGCGCACAAGGCTTCACTGGCGATGATTGTTCTAACGGAATATAGAG
TATCATGTGGTCTTGGTAGAAAACAAACAGGGACTTATGATGGAAAGAGC
AATATCCAATTCAATGGTAACCTTGGAAACAATATCCAAAACCCAATGAG
ATTCCGATTCGATGGAAAACTGTCTTTGGTGCTCTGTGATGGATACGTAG
AGCTTCGATTGTATTCTTTGGAAAACAAAGACCATTTGGACCATGGGTTA
GGATGTTGCGACACGTGGCCTTGGGGAGTTTGCAGAGGACAATGTGACTC
TTATTTCAAAATCTGCGTCACTGATTGGACTAGCTCGTCTAAACCGAGAT
GGACAAGTCACTGATCTTCAACATCCTCGGGATTTTCACGATTTTTGTTC
AAATGAATCTTTTCGAAGTCATGGTGACATCATATGACGAAGATACTTGG
CCAAACCCCGATGATTTGATCGATATTCACACACAAATCGTATACGCGAA
ACATGGTCAATCGAGCCAGAATGCCAATGTCCAAAAATTTGACGTTAAAG
GCCGTGTCAGCTTCTTGAAATTTGACGTCAAAACATATTGCGCACAAGGC
TTCACTGGCGATGATTGTTCTAACGGAATATAGAGTATCATGTGGTCTTG
GTAGAAAACAAACAGGGACTTATGATGGAAAGAGCAATATCCAATTCAAT
GGTAACCTTGGAAACAATATCCAAAACCCAATGAGATTCCGATTCGATGG
AAAACTGTCTTTGGTGCTCTGTGATGGATACGTAGAGCTTCGATTGTATT
CTTTGGAAAACAAAGACCATTTGGACCATGGGTTAGGATGTTGCGACACG
TGGCCTTGGGGAGTTTGCAGAGGACAATGTGACTCTTATTTCAAAATCTG
CGTCACTGATTGGACTAGCTCGTCTAAACCGAGATGGACAAGTCACTGAT
CTTCAACATCCTCGGGATTTTCACGATTTTTGTTCAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004810XLOC_004810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008600-exon-sc0000086-1575043694:125328..125362TCONS_00008600-exon-sc0000086-1575043694:125328..125362Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1575043694:124705..124779TCONS_00008600-exon-sc0000086-1575043694:124705..124779Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1575043694:124175..124350TCONS_00008600-exon-sc0000086-1575043694:124175..124350Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1575043694:123794..123917TCONS_00008600-exon-sc0000086-1575043694:123794..123917Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1575043694:122077..122431TCONS_00008600-exon-sc0000086-1575043694:122077..122431Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1510915933:125328..125362TCONS_00008600-exon-sc0000086-1510915933:125328..125362Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1510915933:124705..124779TCONS_00008600-exon-sc0000086-1510915933:124705..124779Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1510915933:124175..124350TCONS_00008600-exon-sc0000086-1510915933:124175..124350Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1510915933:123794..123917TCONS_00008600-exon-sc0000086-1510915933:123794..123917Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1510915933:122077..122431TCONS_00008600-exon-sc0000086-1510915933:122077..122431Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1491911889:125328..125362TCONS_00008600-exon-sc0000086-1491911889:125328..125362Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1491911889:124705..124779TCONS_00008600-exon-sc0000086-1491911889:124705..124779Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1491911889:124175..124350TCONS_00008600-exon-sc0000086-1491911889:124175..124350Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1491911889:123794..123917TCONS_00008600-exon-sc0000086-1491911889:123794..123917Clytia hemisphaericaexon
TCONS_00008600-exon-sc0000086-1491911889:122077..122431TCONS_00008600-exon-sc0000086-1491911889:122077..122431Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008600-proteinTCONS_00008600-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:122077..125362 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.0326	1.83594	1.14851	0.614412	1.50557	1.53188	3.74952	1.10491	27.3721	25.0326	26.776	50.0817	5.22122	4.76242	69.6617	64.0235	21.778	20.0414	29.2648	32.9914	41.6533	48.058	0	0.84039	13.3855	21.2143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011651Notch_ligand_N
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0007219Notch signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0007219 Notch signaling pathway
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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