|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008593 ID=TCONS_00008593|Name=TCONS_00008593|organism=Clytia hemisphaerica|type=transcript|length=1233bp aaattttccatttaacagtaaaattgaaaaaagttagagggtaaaatgaa atgattttttcgtGGCTTTTATTCCTCCTCAATTTTCAAACCACGGAAGG TTTAAAATGCAAAGCTCAGAAACCACAAAACGAACATGGCATTAAACCAA TTCATATCATTGATCAAGAAACAGATTTCGAAGAAGGACATCTGAAGGCG TTGGTACCGCGATTGTCAACCGAATGGATTGTCGATTTCCAATTCGTTTT GAATGGTCCTCACACGTCCACACATAACTATTGTAATATTTTCCGCATAG GTAAAGGAGATAATTGGACAAACTATGGCGATCGACTCGTTGCCCTGTTC TTCCACAAAGCCGTGCTTAATAATAATCTCAGCATTTTTACTGCGATAAA TGGTGCAGATCGCAACATTCATGGTGATACCATTATCTACGATGTTGAAT ACAAGGTCAAAGTCCAACAAAAATACCATGGAAACAATATCTACAAAATA CATGTTCATATTAATGATCAAGAAGTGAGTGTGGTAGAGAATGCAATTCA ACATGTTCGACAGTTTTATGATTTGAAAGTTTATGTAGGAGATCCGTGGT ATCCTGCGTGTAATGGTAAAATAAGTAACGTCAAAATCATAAACTTTTTG TAGTCGTGATGTCCGTTAAAGTTAAATTCCTATCTTATGAtataatcgat aaataatcgaaaCCACGgatttgtaaagcccgaagggctagatgtcgtgt tttaagctcttccaagcaggaaaaagtgaatatggcaaaaaatattgctg ctattcctgttttcgaaaacccgcgaagcttctgattggtcacgGTATCG ACTTagataggatttcctacctaactatgacacacttttcagcaaaagta caacatctagtccttcgggctttataaatctttgaTCGAAACACAGCAAC GAGTAAAAAGTTTTTATGTGTAtatgtattcacaaaattttattttgagt tCTCCTTctcttttctttgatttttaatcaatgttttgcgtgattgcgtg aattgagggtccgatGGGGGGCTCTATGATActttgttaaccggttactt tttcgaagcgggctacacgactttttgcgcaatgcaattggttcttttcg catgacgacgggcctacattgtccagagtcgcccgtcgttaggaaaattc attgtgatgtcactttttcaaaggaaaatgaac Run BLAST on NCBI protein sequence of TCONS_00008593-protein >TCONS_00008593-protein ID=TCONS_00008593-protein|Name=TCONS_00008593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MIFSWLLFLLNFQTTEGLKCKAQKPQNEHGIKPIHIIDQETDFEEGHLKA LVPRLSTEWIVDFQFVLNGPHTSTHNYCNIFRIGKGDNWTNYGDRLVALF FHKAVLNNNLSIFTAINGADRNIHGDTIIYDVEYKVKVQQKYHGNNIYKI HVHINDQEVSVVENAIQHVRQFYDLKVYVGDPWYPACNGKISNVKIINFL Run BLAST on NCBI transcript from alignment at sc0000086:70058..75678- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008593 ID=TCONS_00008593|Name=TCONS_00008593|organism=Clytia hemisphaerica|type=transcript|length=5621bp|location=Sequence derived from alignment at sc0000086:70058..75678- (Clytia hemisphaerica) AAATTTTCCATTTAACAGTAAAATTGAAAAAAGTTAGAGGGTAAAATGAA
ATGATTTTTTCGTGGCTTTTATTCCTCCTCAATTTTCAAACCACGGAAGG
TTTAAAATGCAAAGCTCAGGTAAGGTCTTCCCAGCTAGCACACAACGTTG
TTTCAACGTTCATCTAACGTTATATGGACGTTGTGAACGTCAGATAAACG
TTTAAACAACGTTGTGTGCCAGCTGGGTTACGTAAATTGCTAACTTTAAT
AGACGGGGTGTATGTCGCCTCGATTAAAAGTAGGATTAGAATTTCAATAA
AGAAAATAAAAACTTATGGATGTTGGGAATTTACCGCAGGACTTAGTTTG
AGATATTCGCTTTTTCGCTAGGACGCAGGAGAGTGGAGATTTTAGCAAAG
TTGTGAAAATCTAAAAAGAGAACACTGAGACCAGGACATATCCGATTCAT
TCTACCATCTTCAAAAGTGCAAATATAAAAAATTGCTTGTTTTACCCTTG
TGCGTGATTCTAGACTTTCTTAACGTGAAGGGGTCACCAAATCTTCAAGA
ACAACCCATAAAATTTTCTCCTTAATTTTCAGAAACCACAAAACGAACAT
GGCATTAAACCAATTCATATCATTGATCAAGGTAAATTCTTTTTCCTCAA
TTAACCAGAATTTTTGTTCAAATCTGGTATAGATTGACACTTTTTTCTTA
TGAGAGCCAGTAAATTTTGGCTCAGGTTGGGCTATTCCCAGAGCTGTTCT
TAATTTTTTTTTGAAATTTTTAGGTTTAAATGTTTTTACAATGTTCTTAA
TATGCTAAAGTCTCTTTACTACACCCCTTTCTCACAGACCCACTGGGATC
CCTTCCCACTGGAAAAATTTGCCATCATATCGTCCCCAGTGGAATATTAT
CCTCCAATTTTTGTACTCACTAAAAACAATCAAATAAACCAATCCTCGCT
GCAGAATATTTACTATTTTCCCCATCCCCATTGAATTTTCTGACTTGAAA
AAAGAATAATTGAAAACCCTGGTCATATACAAAATATGAGAATATCAATC
CCCATCGAGTTTCAGTCCGTTATTTTTATCCCCACTGACTAAAAGAATCT
TACCGAGTTTGTGAGAAGGGGGTCTTTGAACTGATCTGTGATCTGAGGCT
GAGATTTTTCTTAAATTACTCTTATGTTTTTGGCAAATTTTCAGCAGTTG
TTTTTATAGTGTGTATACTATAACTCTACAGTTGATACGTATTATATATT
CTGGTGAACACCACTGAACTTTATATACCCTGGACCAAGCTTTTCAATCC
CGGCAAAGCAAAATCTTTGATCGGAATAGGGGTGTAAATGCATCGAGAGC
GCTAGGTCTACTTTCTCTCAAATGTTTTTGTTGATGTAGCGTCGTTAGAC
GTTAATTTTCAACATTGCAATGGCTTCTTTGTGGGTACCAATTCCAAAAA
AACTCAAATCAAAGATGGTGGATATAGCTTGGTCCAGGGATATATAAAGT
TCAGTGATGAACACTAGAGATCACCTTAATGTAGGCTTGTTCTGTCTATC
ACAGCCCCGGTGAAACTTTTTTTCTCAGTATGAATAAAAATTCCAATTGA
AATTCCAATAGGGGAAAGAAATTTCAGAAAATCCATTGGAGATGGTCTTG
GAGTGCAATTTTTAAACATTGAATTTTGAATGGTGATGAGATCAAAATCA
ATTTTCGAAGGGGCTGAAATTCCAGTTCCTTAGTATCTGTATCATATAAC
ACGAAGTTAATTAAACTTTTTCATACTTCAACAGAAACAGATTTCGAAGA
AGGACATCTGAAGGCGTTGGTACCGCGATTGTCAACCGAATGGATTGTCG
ATTTCCAATTCGTTTTGAATGGTCCTCACACGTCCACACATAACTATTGT
AATATTTTCCGCATAGGTAATAGTATGAGAATTGATATTTGGGTAGCTCA
TTAGTTCATTTTATGTAACCTGAGATCAGATACCCTGAGTATCAGAGGTT
AAGTTTTCAAAGAAAATAGTAACCTCTGAAGACAAATAATCGAAATTTTA
TCACGCATGTGTCAATCTAATCACTGTAGAAAAAATCAAAGATGAAGAGC
AAATATTACCATATTAATGTCTAGCAGACTGTATCAGTATGCAGTTTACT
ATTTACGAATTCCCCAGAAACCTCCAAGTGTAGTTGAAATGAGTTTATTT
CGAAAGAAATCATTTACACAATCCCCAAATGTATAACAGTAATTACTAAT
CTTTTAATTATGGAAATGTCACTTTAATTGAATCGAAATAATAGACAAAC
TTTATGTTATGATTCTCTATCACTGACTCTTTTTAAAAAGCATTGATGAA
ATTTTTTAGTTGTGTTTTCAACGACGGGAATAAAAATATCGACTTTGAAC
TTCATCCAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTTGTTGAT
TGCGCGATGAATAGAATCTCGATTCGTCGGCACAGCGTCAATATATGATT
TTGACCTGTGCTTTTCACGGTAGAGATCAGATTGTGAATGTTTTCTGCAC
ACCATGTGTTTATGAATAGGGCGCCGTATCAGTTTTTAACTTTCCGGCAC
ACAACAAGATTCTTGTTGTAGAGTTTTCCGCGGGAGGACTATTTTCCTCA
GATGTATAATTCTCAAGCGCCTTCAAAGGTTTTACCGTGTGTGTAAGAAA
ATTACGAACAGCTGCTTTCAGGTTAATTTCATGGAATTCGTTCATCTTTA
ACATGCTATTTTCTATTTGATTTAACCCTATTAACCCCAGGGGGTAGAAT
CTACCACGCTGGAGTTCTTTTGTGTATATCTCGGAGAAAAGTTTTTTTAA
ACGACTTGGAACTTTTTGACTTTAATAAAATCTTATTAAGAGTACTTGTG
CAAAACTTTAGGGTCATAGGTCGTCCACATCAGGTTTTATGACTTTTACT
GTTGAAACATGACATAAAACCCACTCGGGTAACTTAATGCATGTCCCAAA
ATATTCAAAATCTACTTCTTCGTTTTCGCCCCCAACTCCAGCCCTTAAAA
CATAACAAAATATACATTTTTGGAAGCGTATTTGGATATAGAATGTTGGA
TTTGGTGTTACTTAATTTTTTTCTCAGCATAATTAATTTAAAAAAGTTTA
ATATCTCAAGAACTAATGCTCGAAACGTTATGAAATTTAGACCAATGATA
GACCTCATCAAGAAGAGGAGAAATATTTAAAAAGGAAATGAAAATTAGCT
GATATCAGCATTTTATTGAAAAAATTCGAATTTCTGCAATTTCGCTGACG
TCATCAATTTTGGGAAATACTTTTTTTGAATCATCTCGATGTGCTTTATC
ACTGATCCAAATTTCATAAAGTTTTGATTTATATTTCTTGAGATATTCAA
CTTTTTGTATTTATGACGTCATCAATTATGACGTCATAAGCAGGTTTTCG
TAAAATATCTCTAATTATTCTGAGAAAAAATTTAAGTAACACCGAATTCG
ATATTCTACATCCAATTACGCTCCCAAAAATTTGTTATGGTTTACGGACT
GGATAAACTGGTGGCGAAAAATTAATGCAATTTTGGGACATGCATTAAGT
TACCAGAGCACCTAGAGTCGCTTAAAACTTAATATTTTAAAGTGCTGATA
ACTTTTGAACTATTTATTCAATCATTTCCAAATTTTGACACGTGATAGAC
ATTGACAATGTAAATTTAAAAAATTAAAAAACAAAATTTGAAAATGATGA
CGTCATCATTTATGACGTCATGAAATATTGAAAATTTCACTCATCTTCAG
TATAGTATTTATAAGAAAGTTTTCATGGAAAATACAAAACCAACAATTAT
ATTAAAGGACAGGTGGAAATTTTGCGTCATCGGTTTTTGAATGACGTCAT
CAATTTTTTTTCTTCTCGTAAATTTGTGTCATGATTGAGAACATATGTAC
CAAATTTCATGGCCATAGCTCTTCTAGATTAAAAATAATCGAGGGTGCTA
GATTCTACCCCCCCCCCTGGGAAATCATAGTCCGTATAAAAACCCCGGTC
TGGAAGAGTCTGGAAGCCTCTCGCTTCTTTCAATTGTTTCTTACTTGAAC
TTATCGTTGAGAAATTAGTTTGTTTTATTTACTTTTTGATCATGTGATTA
AATCTTAAACAAATCCCAAGAAGAGTACTTGGTAATAAAATGAAAACTGA
GCAAATTTTAATTTTATCTTTTCATATTAACAAAGGCAAAAATGAGCTAT
GTTCTTATAAAAAACGTGTAGTTGAAAAAACTACTCTCACTTCCAACTTC
AGTTAACCTGATTACAGCTGTTCATAATTTTCTTACGCGCACGGTAAAGC
TCTGAAGGCGCTTGAAAATTAAACATCTGAGGAAAATAGTCCTTCCGCGG
AAAATTCTACAACAAGAATCTTGTTGTGTACCGGAAAGTCAAAAACTGAT
ACACGGCACCCTATTCACAAACACAATCACGCAACTTTGTTGTCATTCCC
AGTCCTTTTAGACGAACGCAGTCTTTACGATTTCGAGATTGCGTATTCGT
CAGATTGTTTGTTTTCACACATCCCTTTAGAGCTTCAGCGTGGTGTGCAG
AAAACAATCACAATCTGATCTCAGGTTAGATTCAGTGACATCATCATCCA
GATCAATAAACAATATATTCATTTGTATTTACATTTAGGTAAAGGAGATA
ATTGGACAAACTATGGCGATCGACTCGTTGCCCTGTTCTTCCACAAAGCC
GTGCTTAATAATAATCTCAGCATTTTTACTGCGATAAATGGTGCAGATCG
CAACATTCATGGTGATACCATTATCTACGATGTTGAATACAAGGTCAAAG
TCCAACAAAAATACCATGGAAACAATATCTACAAAATACATGTTCATATT
AATGATCAAGAAGTGAGTGTGGTAGAGAATGCAATTCAACATGTTCGACA
GTTTTATGATTTGAAAGTTTATGTAGGAGATCCGTGGTATCCTGCGTGTA
ATGGTAAAATAAGTAACGTCAAAATCATAAACTTTTTGTAGTCGTGATGT
CCGTTAAAGTTAAATTCCTATCTTATGATATAATCGATAAATAATCGAAA
CCACGGATTTGTAAAGCCCGAAGGGCTAGATGTCGTGTTTTAAGCTCTTC
CAAGCAGGAAAAAGTGAATATGGCAAAAAATATTGCTGCTATTCCTGTTT
TCGAAAACCCGCGAAGCTTCTGATTGGTCACGGTATCGACTTAGATAGGA
TTTCCTACCTAACTATGACACACTTTTCAGCAAAAGTACAACATCTAGTC
CTTCGGGCTTTATAAATCTTTGATCGAAACACAGCAACGAGTAAAAAGTT
TTTATGTGTATATGTATTCACAAAATTTTATTTTGAGTTCTCCTTCTCTT
TTCTTTGATTTTTAATCAATGTTTTGCGTGATTGCGTGAATTGAGGGTCC
GATGGGGGGCTCTATGATACTTTGTTAACCGGTTACTTTTTCGAAGCGGG
CTACACGACTTTTTGCGCAATGCAATTGGTTCTTTTCGCATGACGACGGG
CCTACATTGTCCAGAGTCGCCCGTCGTTAGGAAAATTCATTGTGATGTCA
CTTTTTCAAAGGAAAATGAAC Coding sequence (CDS) from alignment at sc0000086:70058..75678- >TCONS_00008593 ID=TCONS_00008593|Name=TCONS_00008593|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0000086:70058..75678- (Clytia hemisphaerica) GTAAAGGAGATAATTGGACAAACTATGGCGATCGACTCGTTGCCCTGTTC TTCCACAAAGCCGTGCTTAATAATAATCTCAGCATTTTTACTGCGATAAA TGGTGCAGATCGCAACATTCATGGTGATACCATTATCTACGATGTTGAAT ACAAGGTCAAAGTCCAACAAAAATACCATGGAAACAATATCTACAAAATA CATGTTCATATTAATGATCAAGAAGTGAGTGTGGTAGAGAATGCAATTCA ACATGTTCGACAGTTTTATGATTTGAAAGTTTATGTAGGAGATCCGTGGT ATCCTGCGTGTAATGGTAAAATAAGTAACGTCAAAATCATAAACTTTTTG TAGAAACAGATTTCGAAGAAGGACATCTGAAGGCGTTGGTACCGCGATTG TCAACCGAATGGATTGTCGATTTCCAATTCGTTTTGAATGGTCCTCACAC GTCCACACATAACTATTGTAATATTTTCCGCATAGAAACCACAAAACGAA CATGGCATTAAACCAATTCATATCATTGATCAAGATGATTTTTTCGTGGC TTTTATTCCTCCTCAATTTTCAAACCACGGAAGGTTTAAAATGCAAAGCT CAGGTAAAGGAGATAATTGGACAAACTATGGCGATCGACTCGTTGCCCTG TTCTTCCACAAAGCCGTGCTTAATAATAATCTCAGCATTTTTACTGCGAT AAATGGTGCAGATCGCAACATTCATGGTGATACCATTATCTACGATGTTG AATACAAGGTCAAAGTCCAACAAAAATACCATGGAAACAATATCTACAAA ATACATGTTCATATTAATGATCAAGAAGTGAGTGTGGTAGAGAATGCAAT TCAACATGTTCGACAGTTTTATGATTTGAAAGTTTATGTAGGAGATCCGT GGTATCCTGCGTGTAATGGTAAAATAAGTAACGTCAAAATCATAAACTTT TTGTAGAAACAGATTTCGAAGAAGGACATCTGAAGGCGTTGGTACCGCGA TTGTCAACCGAATGGATTGTCGATTTCCAATTCGTTTTGAATGGTCCTCA CACGTCCACACATAACTATTGTAATATTTTCCGCATAGAAACCACAAAAC GAACATGGCATTAAACCAATTCATATCATTGATCAAGATGATTTTTTCGT GGCTTTTATTCCTCCTCAATTTTCAAACCACGGAAGGTTTAAAATGCAAA GCTCAGGTAAAGGAGATAATTGGACAAACTATGGCGATCGACTCGTTGCC CTGTTCTTCCACAAAGCCGTGCTTAATAATAATCTCAGCATTTTTACTGC GATAAATGGTGCAGATCGCAACATTCATGGTGATACCATTATCTACGATG TTGAATACAAGGTCAAAGTCCAACAAAAATACCATGGAAACAATATCTAC AAAATACATGTTCATATTAATGATCAAGAAGTGAGTGTGGTAGAGAATGC AATTCAACATGTTCGACAGTTTTATGATTTGAAAGTTTATGTAGGAGATC CGTGGTATCCTGCGTGTAATGGTAAAATAAGTAACGTCAAAATCATAAAC TTTTTGTAGAAACAGATTTCGAAGAAGGACATCTGAAGGCGTTGGTACCG CGATTGTCAACCGAATGGATTGTCGATTTCCAATTCGTTTTGAATGGTCC TCACACGTCCACACATAACTATTGTAATATTTTCCGCATAGAAACCACAA AACGAACATGGCATTAAACCAATTCATATCATTGATCAAGATGATTTTTT CGTGGCTTTTATTCCTCCTCAATTTTCAAACCACGGAAGGTTTAAAATGC AAAGCTCAGGTAAAGGAGATAATTGGACAAACTATGGCGATCGACTCGTT GCCCTGTTCTTCCACAAAGCCGTGCTTAATAATAATCTCAGCATTTTTAC TGCGATAAATGGTGCAGATCGCAACATTCATGGTGATACCATTATCTACG ATGTTGAATACAAGGTCAAAGTCCAACAAAAATACCATGGAAACAATATC TACAAAATACATGTTCATATTAATGATCAAGAAGTGAGTGTGGTAGAGAA TGCAATTCAACATGTTCGACAGTTTTATGATTTGAAAGTTTATGTAGGAG ATCCGTGGTATCCTGCGTGTAATGGTAAAATAAGTAACGTCAAAATCATA AACTTTTTGTAGAAACAGATTTCGAAGAAGGACATCTGAAGGCGTTGGTA CCGCGATTGTCAACCGAATGGATTGTCGATTTCCAATTCGTTTTGAATGG TCCTCACACGTCCACACATAACTATTGTAATATTTTCCGCATAGAAACCA CAAAACGAACATGGCATTAAACCAATTCATATCATTGATCAAGATGATTT TTTCGTGGCTTTTATTCCTCCTCAATTTTCAAACCACGGAAGGTTTAAAA TGCAAAGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008593-exon-sc0000086-1575043694:75560..75678 | TCONS_00008593-exon-sc0000086-1575043694:75560..75678 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1575043694:75048..75096 | TCONS_00008593-exon-sc0000086-1575043694:75048..75096 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1575043694:73763..73894 | TCONS_00008593-exon-sc0000086-1575043694:73763..73894 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1575043694:70058..70990 | TCONS_00008593-exon-sc0000086-1575043694:70058..70990 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1510915933:75560..75678 | TCONS_00008593-exon-sc0000086-1510915933:75560..75678 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1510915933:75048..75096 | TCONS_00008593-exon-sc0000086-1510915933:75048..75096 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1510915933:73763..73894 | TCONS_00008593-exon-sc0000086-1510915933:73763..73894 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1510915933:70058..70990 | TCONS_00008593-exon-sc0000086-1510915933:70058..70990 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1491911889:75560..75678 | TCONS_00008593-exon-sc0000086-1491911889:75560..75678 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1491911889:75048..75096 | TCONS_00008593-exon-sc0000086-1491911889:75048..75096 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1491911889:73763..73894 | TCONS_00008593-exon-sc0000086-1491911889:73763..73894 | Clytia hemisphaerica | exon |
TCONS_00008593-exon-sc0000086-1491911889:70058..70990 | TCONS_00008593-exon-sc0000086-1491911889:70058..70990 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:70058..75678 - |
Blast
The following BLAST results are available for this feature:
|