TCONS_00008584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008584
Unique NameTCONS_00008584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008584 ID=TCONS_00008584|Name=TCONS_00008584|organism=Clytia hemisphaerica|type=transcript|length=1672bp
TAACTAGGGATTCTGGGATTAAGCATCCAGACCAGGTCCGCCTGTGCGAT
GTGCGTGGCTGAAACTGTCCCTGAAGCTCTCACAATTAAGATAGAAGGGA
AAAGGTAGGAGTCCTTCTATAAATGTACGGTTTTTATTTAAGATGTAATT
TTAAATGGAAGAAATTTAGAATCGTCTTAGAGTAACAAAAGAttcggaaa
aataaaaatgccaaaaactaAGCGGAAGGATTACACGAAATACGATATTT
TCTTCCGGTGTTTACTACAACATACAATGCCTGATGATGCCTGATGAACA
AAAACGGGATCAAAATCCAATCAGTACTTATCAATAGAATTATTCATTTT
AGCTCCGAGGTTTCGATAAGGATTTGCGCTGATTTATTTCTAGAATAATT
GATAAAGAATGCAAAATCTTCCTCTTCCAAGGAATTTCATCATTGTCTTG
CTAAATTTAATatcccagctagcacacaacgttgtttcaacgttcatcta
acgttaaatggacgttatgaacatcagataaacgttgaaacaaNAAATTT
AATatcccagctagcacacaacgttgtttcaacgttcatctaacgttaaa
tggacgttatgaacatcagataaacgttgaaacaaaacaaacaaaacagt
TGTGTGTTAGTTGGGATACCAGTCTTAATGTAAAAGCTCGTAATCTAAAG
TCAGCAGTTTACGGAAATCTCAATCAAATTAAAAACCAAACAGTCTTAGT
TTCTCTTTTTATTGTCATTGTCTTTCTTTTTCCAATAGTTGTGAATCAAC
CAGATACCAATCAAACAACATACCAGGCCAAAAATCCCAAAATTACAAAT
CAAAAAAGCAGCTCTTTCAATAGGCGAAAAATCACCTAAGAATGGGTAGA
CCCAGAAACCAAATCTGTGATGGACAGCATAAACAAAGGATATATAGAAA
GTGATGTATAGACACCAACCCAGGGCTCCCTTCTTTGAGCTGCTTGGTGC
TTGGTGAAACACAATCAATAGCTCAATAAAGGCTGCAAATATCGGTAATG
TATGGGTAGCGTGGTTGTGAAACGTAAAATCCAAGATGCAATTAATCGCC
GTTCGTTTGCAGACCAGCGTTGGATCATACCAGTAAACGCCCCAGAATTG
GATACAAACGGTACACGCGATGGGAACGATAATACTCGCAAACAGGTAAT
CACGGATTTTTCGTGTGCCGTATGAATTATTACTTGTTCCGATTAAGAAA
TATTTCAAGTCAGCCAATGTCGCAAATCCATAATACAAGACTTGGAAATA
CAAACAATGAATGGTCAGGAATTTATGCTGCTTCAATGGTGTTTCAGTTA
GATTTCGAATAGATGGAAAATCATGTGCAAATGTAACGTAACTGAAAAAT
CCAGACAGCAAAACATGATACAAGAATTCGTAAATTCGAATTGGTCTCAT
TTTAAGTTACAGTATTTGATGTAGTTTTCCAACGTAGTATTTTTCCAGAG
TACGAGATTGTATGTATCTTGATGTAAGTTTTTCACTGTTCAGTGTATCG
TTTTCCCTTGTCACAACACGTAAAGAGTATATAACACGATAAATCATTCC
ACAAACacaaatcaaaatcaaacacGTCTTTCTACACATCTAAATGCTAA
TCTCTTGTACTTTGGACTTTCG
Run BLAST on NCBI

transcript from alignment at sc0000086:849109..850861+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008584 ID=TCONS_00008584|Name=TCONS_00008584|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at sc0000086:849109..850861+ (Clytia hemisphaerica)
TAACTAGGGATTCTGGGATTAAGCATCCAGACCAGGTCCGCCTGTGCGAT
GTGCGTGGCTGAAACTGTCCCTGAAGCTCTCACAATTAAGATAGAAGGGA
AAAGGTAGGAGTCCTTCTATAAATGTACGGTTTTTATTTAAGATGTAATT
TTAAATGGAAGAAATTTAGAATCGTCTTAGAGTAACAAAAGAttcggaaa
aataaaaatgccaaaaactaAGCGGAAGGATTACACGAAATACGATATTT
TCTTCCGGTGTTTACTACAACATACAATGCCTGATGATGCCTGATGAACA
AAAACGGGATCAAAATCCAATCAGTACTTATCAATAGAATTATTCATTTT
AGCTCCGAGGTTTCGATAAGGATTTGCGCTGATTTATTTCTAGAATAATT
GATAAAGAATGCAAAATCTTCCTCTTCCAAGGAATTTCATCATTGTCTTG
CTAAATTTAATatcccagctagcacacaacgttgtttcaacgttcatcta
acgttaaatggacgttatgaacatcagataaacgttgaaacaaNAAATTT
AATatcccagctagcacacaacgttgtttcaacgttcatctaacgttaaa
tggacgttatgaacatcagataaacgttgaaacaaaacaaacaaaacagt
TGTGTGTTAGTTGGGATACCAGTCTTAATGTAAAAGCTCGTAATCTAAAG
TCAGCAGTTTACGGAAATCTCAATCAAATTAAAAACCAAACAGTCTTAGT
TTCTCTTTTTATTGTCATTGTCTTTCTTTTTCCAATAGTTGTGAATCAAC
CAGATACCAATCAAACAACATACCAGGCCAAAAATCCCAAAATTACAAAT
CAAAAAAGCAGCTCTTTCAATAGGCGAAAAATCACCTAAGAATGGGTAGA
CCCAGAAACCAAATCTGTGATGGACAGCATAAACAAAGGATATATAGAAA
GTGATGTATAGACACCAACCCAGGGCTCCCTTCTTTGAGCTGCTTGGTGC
TTGGTGAAACACAATCAATAGCTCAATAAAGGTTGCAAATATCGGTAATG
TATGGGTAGCGTGGTTGTGAAACNTTGGTGCTTGGTGAAACACAATCAAT
AGCTCAATAAAGGCTGCAAATATCGGTAATGTATGGGTAGCGTGGTTGTG
AAACGTAAAATCCAAGATGCAATTAATCGCCGTTCGTTTGCAGACCAGCG
TTGGATCATACCAGTAAACGCCCCAGAATTGGATACAAACGGTACACGCG
ATGGGAACGATAATACTCGCAAACAGGTAATCACGGATTTTTCGTGTGCC
GTATGAATTATTACTTGTTCCGATTAAGAAATATTTCAAGTCAGCCAATG
TCGCAAATCCATAATACAAGACTTGGAAATACAAACAATGAATGGTCAGG
AATTTATGCTGCTTCAATGGTGTTTCAGTTAGATTTCGAATAGATGGAAA
ATCATGTGCAAATGTAACGTAACTGAAAAATCCAGACAGCAAAACATGAT
ACAAGAATTCGTAAATTCGAATTGGTCTCATTTTAAGTTACAGTATTTGA
TGTAGTTTTCCAACGTAGTATTTTTCCAGAGTACGAGATTGTATGTATCT
TGATGTAAGTTTTTCACTGTTCAGTGTATCGTTTTCCCTTGTCACAACAC
GTAAAGAGTATATAACACGATAAATCATTCCACAAACacaaatcaaaatc
aaacacGTCTTTCTACACATCTAAATGCTAATCTCTTGTACTTTGGACTT
TCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004802XLOC_004802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008584-exon-sc0000086-1491911889:849109..850139TCONS_00008584-exon-sc0000086-1491911889:849109..850139Clytia hemisphaericaexon
TCONS_00008584-exon-sc0000086-1510915933:849109..850139TCONS_00008584-exon-sc0000086-1510915933:849109..850139Clytia hemisphaericaexon
TCONS_00008584-exon-sc0000086-1575043694:849109..850139TCONS_00008584-exon-sc0000086-1575043694:849109..850139Clytia hemisphaericaexon
TCONS_00008584-exon-sc0000086-1491911889:850221..850861TCONS_00008584-exon-sc0000086-1491911889:850221..850861Clytia hemisphaericaexon
TCONS_00008584-exon-sc0000086-1510915933:850221..850861TCONS_00008584-exon-sc0000086-1510915933:850221..850861Clytia hemisphaericaexon
TCONS_00008584-exon-sc0000086-1575043694:850221..850861TCONS_00008584-exon-sc0000086-1575043694:850221..850861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:849109..850861 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	3.1792e-08	7.18476	4.10453	19.9858	16.4435	6.81975	16.5539	14.5465	4.45717	8.87402	8.96923	1.87261	2.27696	0.768053	1.1776	2.52556	2.03453	0.777374	0.760198	1.51888	0.529051	6.68261	6.14769	1.57094	1.49527	0.347533	1.31818
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006838Far-17a_AIG1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00008584 vs. Swiss-Prot (Human)
Match: AIG1 (Androgen-induced gene 1 protein OS=Homo sapiens GN=AIG1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-16
Identity = 55/163 (33.74%), Postives = 73/163 (44.79%), Query Frame = -1 
Query:  854 KFLTIHCLYFQVLYYGFATLADLKYFLIGTSNNSYGTRKI------RDYLFASIIVPIACTVCIQFWGVYWYDPTLVCKRTAINCILDFTFHNHATHTLPIFAAFIELLIVFHQAPSSSKKGALGWCLYITFYISFVYAVHHRFGFWVYPFLGDFSPIERAAF 1324
            KFLT   L  Q +++G   L DL   L   S N    R++      RD++ A +  P+   V   FW +Y YD  ++  +   N I  +   NH  HT  +    IE+    HQ PS S  G    C +   YI +V  VHH  G WVYPFL    P  R  F
Sbjct:   40 KFLTFIDLVIQAVFFGICVLTDLSSLLTRGSGNQEQERQLKKLISLRDWMLAVLAFPVGVFVVAVFWIIYAYDREMIYPKLLDNFIPGWL--NHGMHTTVLPFILIEMRTSHHQYPSRSS-GLTAICTFSVGYILWVCWVHHVTGMWVYPFLEHIGPGARIIF 199
The following BLAST results are available for this feature:
BLAST of TCONS_00008584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AIG11.897e-1633.74Androgen-induced gene 1 protein OS=Homo sapiens GN... [more]
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