TCONS_00008582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008582
Unique NameTCONS_00008582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008582 ID=TCONS_00008582|Name=TCONS_00008582|organism=Clytia hemisphaerica|type=transcript|length=1211bp
GGAAAGTCAGTTCAACAATCACAAAAAGATATTCACTAAAAGAGTGGTAA
GAAATCTTAATATATTCAAtcacaaaaattacaaaatatcttgAAAGGCC
ATATTGGAATCAGGAAGTAATGGCAGTTATTGTACCatctttcattttca
atctaAATTTCTTCGACATCCTATTATACGCATTTATAACGCTCATTATC
TATACTGTAATCGTTTACGTCGAGCATTTGGTACAGTTGAAAAATTATCC
TCCTGGTCCCTTCCCAGTTCCCGTACTCGGGAATGTGCACCAAATAGACG
GACGGCGTCCTCAGGAAAGTTTACAGAAGTTTGGTAAAATCTATGGGGAT
GTTTTCTCCATCAGCTTTGGTATGAGTCGTGTTGTGATTGTTAACACAAT
TGAGCCCATGAAAGAAGCTTTATTGAAAAAGTCAGAAGATTTTGCTGGAA
GACCTCAGGATAACTATCTCTTCAAAATGTTGACCAGAGATTTCCAAGAT
GTTGCTGTAGGAGACTAcaataaaaaatggattttacttCGAAAGACAAT
GCTTAGAGGATTAAAAACCTTTgcaaatcattttgaaaaattagagtGCA
AGGTAGCAAGAGAAACAGAGAAATGCCAAAAACGTTTGGCAAAGAAGGAA
ACCAATGGAGAGCCAGTTAACTTGGAGGATGAGTTTGCTTTGATCATTGT
TGGAGTACTTTACTGCATTATGTTTGGCGAAGAGATCAACGAGAATGTTA
ACGAAGGCGATCTCCAAACGATTCTCAACTATATGAAAGTTTTTCATGAT
GCATTCTCTCATGGCAATTTGACCAGCGTTTTTCCTTTGTTACGATTTAT
ACCAATCCCTGAGAATCAAGCTACCAAGAAGCTAAAGGACATAACTGATG
ACTTCTTGAAACAAAAATATGATCATCATTTGGCAACTTTAGATAAAGAG
GATCCTAAATGTTTCTTGGATCATTTGATTTTGACTGCAGAGGAAATTAA
CAAGGAAGGTGAAATACAGATTACCAGAGATAACATCGAACTTGTGTTTG
GAGATATGATGGTGGGAGGAATTGATACCACGGTAGTTAATCTTTTATGG
GCTATCCTGTACCTTCTCCATGATCCTGATGTTCATCAAAAAGCTCTTGA
AGAGATTGAAAGAGTCGTTGGTACTGGCAGATATCCAGAGCTTCAAGATC
GTCCATCGATG
Run BLAST on NCBI

transcript from alignment at sc0000086:844691..847026+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008582 ID=TCONS_00008582|Name=TCONS_00008582|organism=Clytia hemisphaerica|type=transcript|length=2336bp|location=Sequence derived from alignment at sc0000086:844691..847026+ (Clytia hemisphaerica)
GGAAAGTCAGTTCAACAATCACAAAAAGATATTCACTAAAAGAGTGGTAA
GAAATCTTAATATATTCAAtcacaaaaattacaaaatatcttgAAAGGCC
ATATTGGAATCAGGAAGTAATGGCAGTTATTGTACCatctttcattttca
atctaAATTTCTTCGACATCCTATTATACGCATTTATAACGCTCATTATC
TATACTGTAATCGTTTACGTCGAGCATTTGGTACAGTTGAAAAATTATCC
TCCTGGTCCCTTCCCAGTTCCCGTACTCGGGAATGTGCACCAAATAGACG
GACGGCGTCCTCAGGAAAGTTTACAGAAGTTTGGTAAAATCTATGGGGAT
GTTTTCTCCATCAGCTTTGGTATGAGTCGTGTTGTGATTGTTAACACAAT
TGAGCCCATGAAAGAAGCTTTATTGAAAAAGTCAGAAGATTTTGCTGGAA
GACCTCAGGATAACTATCTCTTCAAAATGGTgagtttttcttctttcttt
agacacccctttctcacagacccactggaatcctttcccactggaaaaaa
ttgtccaaaatatcgtccccggtggaaaattgtcctccaatttttgttcc
cactgaaaataatcaaataaaccaatcctcactgcaaaatattgtgctat
ccgggtctgtgagaagagggtgccATTAGAGCTTATCACTCAGATGTTAG
TAAAAGTTGCTTTTGAATTTCATGGACTAACCACAATTTACCATTAACAT
CAACCGCCTCAATGATCTAATGATCCAACGCGCTAAGTATCTGGCCGCGG
AAAATAACTGACAATACTCGGCAATAAGTAAATTTTAGAAAAGACAGCTC
GTCCCCGTTTCCTTTGTTTGTCCCTTTCTTATAATTCTTTGTGTGTTTGG
CGTTTTCTTCATCTTCCACCAGTACAGATCAGGGGTGGAATTTGTCTGGG
TACGAGATTTTCAGAAAACTAAGTtggctttttttaaatgatttatAGGG
CAGAGATGTGTTCAAAACTTTAGTTTCGTATAAAATGATCCTTTTTCGCC
ATTTTCAGTTGACCAGAGATTTCCAAGATGTTGCTGTAGGAGACTAcaat
aaaaaatggattttacttCGAAAGACAATGCTTAGAGGATTAAAAACCTT
TgcaaatcattttgaaaaattagagtGCAAGGTAGCAAGAGAAACAGAGA
AATGCCAAAAACGTTTGGCAAAGAAGGAAACCAATGGAGAGCCAGTTAAC
TTGGAGGATGAGTTTGGTAAGTTTAAACTAATTCATTCTCTTATCTGATC
GACACTTCAACGTTGGAGTGAATCTTTGCCATGACGTACTCTATACTATN
GATCGACACTTCAACGTTGGAGCGAATCTTTGCTATGACGTACTCTGTAC
TAGAGTGTATCTCATGTATAACGTAAaatacggcaatgaattttgaaatt
tctgtaaaaatatcgggTCTGTTTTATTCCCACTGGTTCAAAATCACTCA
ATTAGTCACTGAGAAAGGGACTATAACCTActaccccagctggcacacaa
cgttgttttaacgtttaacgtcagatgaacgttgaaacaatgttgtgtgc
taGCTTGGACAGCTTGCAACTGCAAAGTAACGACGATGCATTTAGGAACT
CCTATCTCCTTTCACActgattgtaatttttttccaaatgtttttttatc
gaaaacgtgcttattttcgattttcgattcTTAAAAGGTGTTTTTGTGCG
TCGTGTAGTAGCACTCTTTTGTGCGTGTTTTACATAGgatcttatttttt
gttttcttacaGCTTTGATCATTGTTGGAGTACTTTACTGCATTATGTTT
GGCGAAGAGATCAACGAGAATGTTAACGAAGGCGATCTCCAAACGATTCT
CAACTATATGAAAGTTTTTCATGATGCATTCTCTCATGGCAATTTGACCA
GCGTTTTTCCTTTGTTACGATTTATACCAATCCCTGAGAATCAAGCTACC
AAGAAGCTAAAGGACATAACTGATGACTTCTTGAAACAAAAATATGATCA
TCATTTGGCAACTTTAGATAAAGAGGATCCTAAATGTTTCTTGGATCATT
TGATTTTGACTGCAGAGGAAATTAACAAGGAAGGTGAAATACAGATTACC
AGAGATAACATCGAACTTGTGTTTGGAGATATGATGGTGGGAGGAATTGA
TACCACGGTAGTTAATCTTTTATGGGCTATCCTGTACCTTCTCCATGATC
CTGATGTTCATCAAAAAGCTCTTGAAGAGATTGAAAGAGTCGTTGGTACT
GGCAGATATCCAGAGCTTCAAGATCGTCCATCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004801XLOC_004801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008582-exon-sc0000086-1491911889:844691..845169TCONS_00008582-exon-sc0000086-1491911889:844691..845169Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1510915933:844691..845169TCONS_00008582-exon-sc0000086-1510915933:844691..845169Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1575043694:844691..845169TCONS_00008582-exon-sc0000086-1575043694:844691..845169Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1491911889:845749..845956TCONS_00008582-exon-sc0000086-1491911889:845749..845956Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1510915933:845749..845956TCONS_00008582-exon-sc0000086-1510915933:845749..845956Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1575043694:845749..845956TCONS_00008582-exon-sc0000086-1575043694:845749..845956Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1491911889:846503..847026TCONS_00008582-exon-sc0000086-1491911889:846503..847026Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1510915933:846503..847026TCONS_00008582-exon-sc0000086-1510915933:846503..847026Clytia hemisphaericaexon
TCONS_00008582-exon-sc0000086-1575043694:846503..847026TCONS_00008582-exon-sc0000086-1575043694:846503..847026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:844691..847026 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0345273	0	0	0	0	0.21272	0	0.501677	1.92865	0.140385	1.8961	0	0.149162	0	0	0	0	0	0	0	0	0	0	0	0	2.50834	0	0.860676	0.00642251
Blast
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BLAST of TCONS_00008582 vs. Swiss-Prot (Human)
Match: CP2C8 (Cytochrome P450 2C8 OS=Homo sapiens GN=CYP2C8 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.812e-35
Identity = 96/330 (29.09%), Postives = 164/330 (49.70%), Query Frame = 3 
Query:  240 KNYPPGPFPVPVLGNVHQIDGRRPQESLQKFGKIYGDVFSISFGMSRVVIVNTIEPMKEALLKKSEDFAGRPQDNYLFKMLTRDFQDVAVGDYNKKWILLRKTMLRGLKTFANHFEKLECKVARETEKCQKRLAKKETNGEPVNLEDEFALIIVGVLYCIMFGEEINENVNEGDLQTILNYMKVFHDAFSHGN-----LTSVFPLL-RFIPIPENQATKKLKDITDDFLKQKYDHHLATLDKEDPKCFLDHLILTAEEINKEGEIQITRDNIELVFGDMMVGGIDTTVVNLLWAILYLLHDPDVHQKALEEIERVVGTGRYPELQDRPSM 1211
            +  PPGP P+P++GN+ QID +   +S   F K+YG VF++ FGM+ +V+ +  E +KEAL+   E+F+GR  ++ + + +T+      +    K+W  +R+  L  L+ F      +E +V  E     + L K  T   P +        I+G   C +    + +   +   Q  L  MK F++ F   N     + + FPLL    P   N+  K +  +T  ++++K   H A+LD  +P+ F+D  ++  E+     + +   +N+     D+ V G +TT   L + +L LL  P+V  K  EEI+ V+G  R P +QDR  M
Sbjct:   27 RKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALIDNGEEFSGR-GNSPISQRITKGLG--IISSNGKRWKEIRRFSLTTLRNFGMGKRSIEDRVQEEAHCLVEELRK--TKASPCD-----PTFILGCAPCNVICSVVFQKRFDYKDQNFLTLMKRFNENFRILNSPWIQVCNNFPLLIDCFPGTHNKVLKNVA-LTRSYIREKVKEHQASLDVNNPRDFIDCFLIKMEQEKDNQKSEFNIENLVGTVADLFVAGTETTSTTLRYGLLLLLKHPEVTAKVQEEIDHVIGRHRSPCMQDRSHM 345
The following BLAST results are available for this feature:
BLAST of TCONS_00008582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP2C82.812e-3529.09Cytochrome P450 2C8 OS=Homo sapiens GN=CYP2C8 PE=1... [more]
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