TCONS_00008577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008577
Unique NameTCONS_00008577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008577 ID=TCONS_00008577|Name=TCONS_00008577|organism=Clytia hemisphaerica|type=transcript|length=3139bp
TTTTAGAAGATCTAGATATGATAAATTTACTTCAtcaatttatattattg
gtTATTTTCTTCACTTGTTACCAATGTGCCGACGTCAGCAAGAATTACAC
CATTTTGTATGATGACTTTTTCACAGACCAGATTGATGCTGCAAAAAGCA
ATTTACACAATGTTAAATGGGAAAGTATTCAAGCGAATTCTGGTCTGCAA
AGTATACTGATATCAGGAACATCTGATAATGTAGTCTTTAcattcagtga
aaaaatcaaTGCAATGTCCACAGCAAATAATATCAATTTTAAGGACTCAC
TTGATAACCTGgAAAAATCATTGATAAAAAGTGGTCATCAGAAATGTTTT
GGCTATTCACCAGATCTTCGTCGTTCATTGATCGCTCTATTCTACAGCAT
CTTCTTGAAAGAAGCAGCCATCGTTACAGACGATTCACCATGTATAATAG
ATTTCGCCAAAGATTTCGATACAGCTTTGAAAGCGCACAAAATGTATGAT
CAAGCAAACCCTACTTTATACCACGTAACTTATGACCCTAACGAAGAGAT
AAACCAACATCATAAATTTTATGAGTTAAAGCTACACGAAGTTAGTTTGA
TTATATTATTATTCCCAAGCACACACAGTCATAAAGTATACCAAGACGCT
GAACATTTTGCTCTATTAACTCCATCACAATTATGGATAGTTCCTGACCA
CCAGGGGGATACTTCAAGACACAGACCAGCTAAAATGTTAACTTTTGATT
TCGAGCGTGTTAATAATGGCAATGGAGGTGGAATGTGGAGATACAAGAAA
TTCGGTGACACCGTTCAAGATTTGGTGCAACTTCACATGGAATCAGACAA
GGAATGTCAAAGCTTTCATCAAGATCAGAAAGATTTTTGTATCCAAAGAA
CATTGTTTCATGAAATACAAACTGTCCAATCCAGAATCTATCCGAACTAC
CATCTTGATTTAACCATACGGTACCGAAATCTTGCGGACAAGCAAACAGG
TTGGATAAATGTGTCATCGGAAATCAGAGGCGATGAATTTTTGGTTCATG
ATCGAAATATTGCTTTACTGAAACCTGTTACTAACGAAGCCATGTACCAG
AACAAGATCACTGCGGTTACCATAATCGACGAACCATACTCCGTCAAAGA
AGATAAAAGTTAcgacaaaataaacaaaatctgTATAACCGGTATCAAAT
GTCGATACCGGGATCCTTCCGCTGGTCCACAAACAAACGGAACTTGGATA
ATATCCTGTTGTACCGGCTATGTTTTAGAACTTTTCCAAATggttttgaa
agatttgaacCTTGAAGTTGACATGTATGTTGTAGAAGATGGAAAATATG
GCAAAGAACAGCCTAACGGAGAATGGGATGGATTAATCGGGGATTTAAAA
TCGGGAAAAGCGGATATCGGAGTTGGAAGTCTATCAATATCGGGTGCAAG
ATCAAAAGTGGTTGATTTTACATCACCTTGGCTAGAAATTGATCTTGGTT
TATTGGTCAAAccgaaaatttcaaagttggattttttgaattttgagttt
atagcACCTTTGGGAACTGATTTGCAATTGGTCCTTTGGGTGACCGTCAT
TGGGGTGATGTTTGTGGTGATTTTCATAGAGAACAACCGATACTTGGTCA
GTTTATCTGATGATCGGTTTTTGACGGATAAATATTATTCACCATATGAA
AGCATGTCTTATATTGGAGGTGTCTTTCTACAACGTGATCTTGGTGGTAT
TAATCCAAAGAAACCTGGCGCACGTGTTGCCTCGATTGTTTTTGCTTTCG
GTATGGTTGTAGTTGTCACCACTTATACAGCATTATTGGTTGAGCAAGGC
GTAAGGCGGGAAGAAAAAGATCCATTCGTGGGATCTGATGACCCAAGGAT
GCGAAATCCTTCAATAGACTACAAGTTTGCAACATTGCAGAGTAGCAACT
ACGAAACATTCTTTGAGAAATCAGAACTCTCTGAATTCAAGAAAGTTTCG
CGTTTCATGAAGAAATATAATGCACCAAATTCAACGGCCGCAATCAAAGC
AATCAAGTCAGGGAAACTCGATGCTTTTCTTTACGACTACGATTTCTTGG
TATGGTACGTATCACGTGACCGTCAATGCGAGCTCAAAGTTCGAAAAGAC
ACCCTCATTACATCAGGTCTTGGTTTCgctttcagaaaagatttcaaatG
GTGGTCAAATTTTAATCAAGCAGTTCTTCGGTACCGTGAAAATGACGAAT
tacaaaatattcattcaaaatGGTTTTTCAATGGTGGGTGTAATAATGAT
GGTCCGGAAACGCCCAAAATCCGGTTAGGTATTAATCATTTTGGTGGATT
GATCTTACTTCTTATCGGTTGTGTCGTGGTCAGTTTTCCGCTGTTATTAC
CGGAACATCTCTATTTCCGGTATTTGAAAGGTACTTTTAACAAACGGATT
CGAAACTTTTTCCGTTTTATATGCTGCCGTCCGAGAAAGAAAGACCAAGA
TAACATGTGAACGAATTCATACTTTTGAATGCCATTTATattcattgggc
tcttccagaaaatcttTGTACATGGGGGATGTTATTGGATATTTAGGTAG
TGAAGAATCtgcaaattttcctttgttttgggggcaaatttgctCTTTTT
AGGAGTAATTTTGAATTTCCgtgggtcaactgatgcttgtccgagAGGTA
TGATGtgttgtccgggggtaaatttctaaaaaacgTTACATCCTCCACCC
CTTCCCCATATTCAAGTTCTACTTTTTGCCATCGAACATCGGCCGTTTAC
CATGAGCTGTTGAGGGAGGGGTTTTTGTATGTTTCTCAGACCTAAATTAG
AGGATGGTGATACCGTTGTacactagactggagtcgtttataatggcgta
aataggcgttatatgatacgaaatgcatatgctgctctgccacccaaatc
tcctaaaagaagaaagttgggcagaaattctttgaatttcttcacatata
tatagTGTATGTCttaattagtcgtctagcttgatagactacatgttttt
tttttataagcataacgcttataagcatatgaaggctcagatttgcagaa
ttcctaagcataacatgagcatatatgtcagcctaaaat
Run BLAST on NCBI

transcript from alignment at sc0000086:800606..806973+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008577 ID=TCONS_00008577|Name=TCONS_00008577|organism=Clytia hemisphaerica|type=transcript|length=6368bp|location=Sequence derived from alignment at sc0000086:800606..806973+ (Clytia hemisphaerica)
TTTTAGAAGATCTAGATATGATAAATTTACTTCAtcaatttatattattg gtTATTTTCTTCACTTGTTACCAATGTGCCGACGTCAGCAAGAATTACAC CATTTTGTATGATGACTTTTTCACAGACCAGATTGATGCTGCAAAAAGCA ATTTACACAATGTTAAATGGGAAAGTATTCAAGCGAATTCTGGTCTGCAA AGTATACTGATATCAGGAACATCTGATAATGTAGTCTTTAcattcagtga aaaaatcaaTGCAATGTCCACAGCAAATAATATCAATTTTAAGGACTCAC TTGATAACCTGGTAAGCTCAATTTGTTTGTATCGGTTGAAAGGTAAATCT CATGTTGAAAGGATAGGGTCTGTATTTTTGAAACACAAAAGTGACCCATG ATGACACTTTAAAGGGTCTGAGCTCCATGATCTTGTTCTTGATAAAGTCC GAGGGGATCTGGACCGAGGAGGTGGTCTTTGTACTAGTGAATACCATAGG CCTGTCTATATTTAGTCAAAGAAGTTGGCTCTACAATTTCtcatttcctt ttttaatgaaaCTATGGAGACGTTTATGGCTTAAGTTTTAGGTAAAGTTG AGTCATTTTTAATTCAGATTCATTTTATACCCTATTGTACGATCAAGAGA CAACTTGACACGAAAAAATCCAtgtctaaaagaaaaaaattaacaactCA CCCCCGAAGAACCGAGAAAAGTCTAAATAGTGTGGTTACataattttagt gaaaaattcaTGATGTCATGCAAATTGCAATATAAGCATAAAATTTCCAA CAGTATTACAACCGTTGATGGGGTTTTGATGAGACATTTGCTTGTCAACA AAATGCTAAGTTGCTAACAGACAGGAAGCTATGTGATCTTTTTCATCAGT ACATTATTCAGGAAAATATAACGCTCCTATCACAATTTGTATGATTTTCC ATAATAAACTGTACCCTAAACTCGAATCTATTCCCTAAGTtcacttttta tgattttgaaggAGCCTacgtaaaatttaaaagtgattCAGAAGTGGCTC TGGCTGACTCCATTAAATGCAATGTCCCCCATATTTACTTTCAATGTGat tttgtattatttttctttcataggAAAAATCATTGATAAAAAGTGGTCAT CAGAAATGTTTTGGCTATTCACCAGATCTTCGTCGTTCATTGATCGCTCT ATTCTACAGCATCTTCTTGAAAGAAGCAGCCATCGTTACAGACGATTCAC CATGTATAATAGATTTCGCCAAAGATTTCGATACAGCTTTGAAAGCGCAC AAAATGTATGATCAAGCAAACCCTACTTTATACCACGTAACTTATGACCC TAACGAAGAGATAAACCAACATCATAAATTTTATGAGTTAAAGCTACACG AAGTTAGTTTGATTATATTATTATTCCCAAGCACACACAGTCATAAAGTA TACCAAGACGCTGAACATTTTGCTCTATTAACTCCATCACAATTATGGAT AGTTCCTGACCACCAGGGGGATACTTCAAGACACAGACCAGCTAAAATGT TAACTTTTGATTTCGAGCGTGTTAATAATGGCAATGGAGGTGGAATGTGG AGATACAAGAAATTCGGTGACACCGTTCAAGATTTGGTGCAACTTCACAT GGAATCAGACAAGGAATGTCAAAGGTATTTGCCTTAGAAtctaagaacca gtaaaatttggCTTATTTATCGCTTTTTCGTAGTTTTAGGCTTAAGTGTT CTTAATATGCCTGAATGGATTCTGAAATTCTAACTCTAGGATTATTTGTA ATTtgtttttagggttttttgcctaaaatgtAGCTTCTGTTCTTACGCTC CCTGAACCTACTTTTCTCAAGATAAAATATTTGGGGGAGGGGTTAGACCT TTAGTCTTTGCTCGTTCAATATGTATATAACAATTCTTTAGTGACCATCC GTTACCTACAGGATCACATATCACTAATCTGTTAACTGCATGTTTAGTGT AAGCTACATTCTAGacttggtaaaaaaattcaaaatattgtcATAAACAA TTATCTTTAATTAAAGATGTATTTtaaccgtagtcgcgcggtcaggtcGT Gccattatttaatttaccaccctaaactcgatccaatcctttttttacac ttttttattgtcttttaaaaagtgtgaaaaaagGCTCGGACGGTTTTGta gtggtaaaacggacaaaaaaaatgTTCGCGCGGTAATCGGCGGCTACGGT CGAGGTTATGAGAACAGACGCATGCATTATATAATTCATGTATCTCAATT CAGCTTTCACNCTACGGTCGAGGTTTTGGGAACAGACGCATGCATTATAT GTTCATGTATCTCAATTCAGCTTTCATCAAGATCAGAAAGATTTTTGTAT CCAAAGAACATTGTTTCATGAAATACAAACTGTCCAATCCAGAATCTATC CGAACTACCATCTTGATTTAACCATACGGTACCGAAATCTTGCGGACAAG CAAACAGGTTGGATAAATGTGTCATCGGAAATCAGAGGCGATGAATTTTT GGTTCATGATCGAAATATTGCTTTACTGAAACCTGTTACTAGTGAGTATA ATTAATAAGCTATTTTTATACAGTAATTGCTAGAAAACTGAGATTTTTTC CTACACGTATGATTCTAAGCtatattttttactttggtTGCTGAGACACG TTAGTATCGAATGTAATCTCGATGAAAATAGCCTAAAGTTAGTGGTTGTG ACTTTGGTGAAAGTCCATTATCCTTGATCCCACAAAGCTTCATTAtcttc tttttaaaatcaaataaatgtAAAACGAAGGTTGCTATGATCCAGAGAAC ATTTCTTCTGGATCTGCCGCATTCTTAACCAGTATGGGATGAGTTCTTAA CCAGCTTGGGGCGGCATTCTTAACCAGTTGGCCAGATTCTTTACCAGCTG GGGGACGAgtgttttgccattttttagtGGGAAGTTTGGCTAGTAAAATG AGCTCCGGCTGAATTCTTTACCAGCTTTGAAAACTGGTTAAGAATTTAAC CAGCGACCCTTCAAACTGGACctgatctttgttttataaTGATACTGTTT TCCCATAGACGAAGCCATGTACCAGAACAAGATCACTGCGGTTACCATAA TCGACGAACCATACTCCGTCAAAGAAGATAAAAGTTAcgacaaaataaac aaaatctgTATAACCGGTATCAAATGTCGATACCGGGATCCTTCCGCTGG TCCACAAACAAACGGAACTTGGATAATATCCTGTTGTACCGGCTATGTTT TAGAACTTTTCCAAATggttttgaaagatttgaacCTTGAAGTTGACATG TATGTTGTAGAAGATGGAAAATATGGCAAAGAACAGCCTAACGGAGAATG GGATGGATTAATCGGGGATTTAAAATCGGGAAAAGCGGATATCGGAGTTG GAAGTCTATCAATATCGGGTGCAAGATCAAAAGTGGTTGATTTTACATCA CCTTGGCTAGAAATTGATCTTGGTTTATTGGTCAAAccgaaaatttcaaa gttggattttttgaattttgagtttatagcACCTTTGGGAACTGATTTGC AATTGGTCCTTTGGGTGACCGTCATTGGGGTGATGTTTGTGGTGATTTTC ATAGAGAACAACCGATACTTGGTCAGTTTATCTGATGATCGGTTTTTGAC GGATAAATATTATTCACCATATGAAAGCATGTCTTATATTGGAGGTATGT ggtgaattttcattttgaaatttctgttAATTATGATAAATTTATGTGAT CAAAGCCAAATTGTTGATCTCCTCAGGCTAGGTTTTTAGCATGTAAGATT CTATGAAAGGCATGAAAGGTTACATCATTACTTTATTAATTGacattttt ggggaaatttatTATCATTACTTTATTAATTTTATCCTATAATTTCTTTC TAAGGTGATACGAAGGAAATTTTCCTCGAGAATAAACTTTTGTGAATCag cttttcagaatttttcgtaGAAACAACTTTCGAAAGTTTGACAAAAGTTC GCAAAAATCGCTAAAGTTTCCGTGAAAGTTTCTCCCTTTAAAGTAGAGTC AGTTGTATATACTTGAAACTTATTTTCCAACATAATTATTCATTTTCCAG GTGTCTTTCTACAACGTGATCTTGGTGGTATTAATCCAAAGAAACCTGGC GCACGTGTTGCCTCGATTGTTTTTGCTTTCGGTATGGTTGTAGTTGTCAC CACTTATACAGCATTATTGGTTGAGCAAGGCGTAAGGCGGGAAGAAAAAG ATCCATTCGTGGGATCTGATGACCCAAGGGTACGATATATTTACTATCAT AAATATTTACATAAAACAAGAGATAGGGTATAATTTTGCTCCATCTTTCA TTCCACTGATGCTTTAGCCTAAAATAAATATCCATAGGGAAGATTTCGTC ACTTGGTTCAAAGATTCTGACTAGCCTTTTGAAATTGACAACAGAAATTC CCAttagaaataattattttaccTTTCTCGAAGAGATTCCCCCTTTAAGG TATCAGATACTATCGAATAAAATTCTTTATGACTCTTGAAGAACACCTGT AATTTTTAGCTATTTGGTTGTCTTAAATAATGTCAGTTCTAATTTCCAAT ATTTTGAAACCCCTCCTTAGATGCGAAATCCTTCAATAGACTACAAGTTT GCAACATTGCAGAGTAGCAACTACGAAACATTCTTTGAGAAATCAGAACT CTCTGAATTCAAGAAAGTTTCGCGTTTCATGAAGAAATATAATGCACCAA ATTCAACGGCCGCAATCAAAGCAATCAAGTCAGGGTAGGAAAACTTTGCA TTAAAATCTAAAACTTCCCTATCTGATTTAAAACAGACAAGGCAATGCAG TAAAACTACAAGAATTACTTGATTGAAAAGGAGTAAGCATTTTTCTGTTC TTGTTCTTGTCATTGTTTAAACCGTTGTTTCCCCCTTCCCAAAAGTGGCC TCGTGGGTGAGAATTTTCCGACTGTCTGAACATTATTCCATGGCCAGCCA CTTtaacaaatttaaaactttaattcgtgatatgcaccactggagagtct tccgactacttttaaaattttccacccaatacgtcacttaaacaatagaa aaagtgaattgggtggaaatttttgcaaattattAGAAGGCTCTCCggtg ttgcatatcatgaatacaatcAGTATGTCTAATTCGAAAACATTATTCTC GGTCATTTCAAGATTGAACTCGAGAATGTTTTGTACTTCAGGAAACTCGA TGCTTTTCTTTACGACTACGATTTCTTGGTATGGTACGTATCACGTGACC GTCAATGCGAGCTCAAAGTTCGAAAAGACACCCTCATTACATCAGGTCTT GGTTTCgctttcagaaaagatttcaaatGGTGGTCAAATTTTAATCAAGC AGTTCTTCGGTACCGTGAAAATGACGAATtacaaaatattcattcaaaat GGTTTTTCAATGGTGGGTGTAATAATGATGGTCCGGAAACGCCCAAAATC CGGTTAGGTATTAATCATTTTGGTGGATTGATCTTACTTCTTATCGGTTG TGTCGTGGTCAGTTTTCCGCTGTTATTACCGGAACATCTCTATTTCCGGT ATTTGAAAGGTACTTTTAACAAACGGATTCGAAACTTTTTCCGTTTTATA TGCTGCCGTCCGAGAAAGAAAGACCAAGATAACATGTGAACGAATTCATA CTTTTGAATGCCATTTATattcattgggctcttccagaaaatcttTGTAC ATGGGGGATGTTATTGGATATTTAGGTAGTGAAGAATCtgcaaattttcc tttgttttgggggcaaatttgctCTTTTTAGGAGTAATTTTGAATTTCCg tgggtcaactgatgcttgtccgagAGGTATGATGtgttgtccgggggtaa atttctaaaaaacgTTACATCCTCCACCCCTTCCCCATATTCAAGTTCTA CTTTTTGCCATCGAACATCGGCCGTTTACCATGAGCTGTTGAGGGAGGGG TTTTTGTATGTTTCTCAGACCTAAATTAGAGGATGGTGATACCGTTGTac actagactggagtcgtttataatggcgtaaataggcgttatatgatacga aatgcatatgctgctctgccacccaaatctcctaaaagaagaaagttggg cagaaattctttgaatttcttcacatatatatagTGTATGTCttaattag tcgtctagcttgatagactacatgttttttttttataagcataacgctta taagcatatgaaggctcagatttgcagaattcctaagcataacatgagca tatatgtcagcctaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004798XLOC_004798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008577-exon-sc0000086-1491911889:800606..800916TCONS_00008577-exon-sc0000086-1491911889:800606..800916Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1510915933:800606..800916TCONS_00008577-exon-sc0000086-1510915933:800606..800916Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1575043694:800606..800916TCONS_00008577-exon-sc0000086-1575043694:800606..800916Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1491911889:801729..802279TCONS_00008577-exon-sc0000086-1491911889:801729..802279Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1510915933:801729..802279TCONS_00008577-exon-sc0000086-1510915933:801729..802279Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1575043694:801729..802279TCONS_00008577-exon-sc0000086-1575043694:801729..802279Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1491911889:802976..803196TCONS_00008577-exon-sc0000086-1491911889:802976..803196Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1510915933:802976..803196TCONS_00008577-exon-sc0000086-1510915933:802976..803196Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1575043694:802976..803196TCONS_00008577-exon-sc0000086-1575043694:802976..803196Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1491911889:803714..804349TCONS_00008577-exon-sc0000086-1491911889:803714..804349Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1510915933:803714..804349TCONS_00008577-exon-sc0000086-1510915933:803714..804349Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1575043694:803714..804349TCONS_00008577-exon-sc0000086-1575043694:803714..804349Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1491911889:804756..804934TCONS_00008577-exon-sc0000086-1491911889:804756..804934Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1510915933:804756..804934TCONS_00008577-exon-sc0000086-1510915933:804756..804934Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1575043694:804756..804934TCONS_00008577-exon-sc0000086-1575043694:804756..804934Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1491911889:805276..805439TCONS_00008577-exon-sc0000086-1491911889:805276..805439Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1510915933:805276..805439TCONS_00008577-exon-sc0000086-1510915933:805276..805439Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1575043694:805276..805439TCONS_00008577-exon-sc0000086-1575043694:805276..805439Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1491911889:805897..806973TCONS_00008577-exon-sc0000086-1491911889:805897..806973Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1510915933:805897..806973TCONS_00008577-exon-sc0000086-1510915933:805897..806973Clytia hemisphaericaexon
TCONS_00008577-exon-sc0000086-1575043694:805897..806973TCONS_00008577-exon-sc0000086-1575043694:805897..806973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:800606..806973 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.785944 0.582038 0.520338 0.388823 0.624398 0.349117 2.26678 2.5494 2.45646 2.99504 1.27493 2.40155 1.6356 1.34319 0.310803 0.316776 1.3661 2.23755 3.00615 3.8816 4.83073 4.12478 1.07608 2.2173 2.78679 2.2451 0 0.17454 0.400028 0.414406
Blast
BLAST of TCONS_00008577 vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.863e-39
Identity = 168/649 (25.89%), Postives = 296/649 (45.61%), Query Frame = 3
Query:  531 YDPNEEINQHHKFYELKLHEVSLIILLFPSTHSHKVYQDAEHFALLTPSQLWIVPDHQ--GDTSRHRPAKMLTFDFERVNNGNGGGMWRYKKFGDTVQDLVQ-LHMESDKECQSFHQDQKDFCIQRT-------LFHEI-------QTVQSRI---------YPNYHLDLTIRYRNLADKQTGWINVSSEIRGDEFLVHDRNIALLKPVTNEAM-YQ--NKITAVTIIDEPY----------SVKEDKSY--DKINKICITGIKCRYRDPSAGPQTNGTWIISCCTGYVLELFQMVLKDLNLEVDMYVVEDGKYG-KEQPNG----EWDGLIGDLKSGKADIGVGSLSISGARSKVVDFTSPWLEIDLGLLVKPKI--SKLDFLNFEFIAPLGTDLQLV--LWVTVIGVMFVVI--FIENNRYLVSLSDDRFLTDKYYSPYESMSYIGGVFLQRDLGGINPKKPGARVASIVFA-FGMXXXXXXXXALLVEQGVRREEKDPFVGSDDPRMRNPSIDYKFATLQSSNYETFFEKSELSEFKKVSRFMKKYNAPNSTAAIKAIKSGKLDAFLYDYDFLVWYVSRDRQCELKVRKDTLITSGLGFAFRKDFKWWSNFNQAVLRYRENDELQNIHSKWFFNGGCN--NDGPET 2312
            +DP  + N      E K  E  +IIL      +  VY+ A    +     +W+V + +  G+  R+ P  +L      +N  N           D V  + Q +H   +KE  +   D    C+  T       LF  +         V  R+         + NY + + ++ R L   Q G  N      G   + +DR I      T +   YQ   ++  VTI  EP+          + KE+ +   D + K+  TG      D S G   +   +  CC G+ ++L   + + +N   ++++V DGK+G +E+ N     EW+G++G+L SG+AD+ V  L+I+  R++ ++F+ P+    L +LVK +I  S LD     F+ P  + L L+  L V V+ VM  ++  F    R+ V+  ++    +   +   +M +  GV L   +G   P+   AR+  +V+A F M++V +    L     + R E +   G +DPR+RNPS  + +AT++ S+ + +F +    E   + R M+K+N  ++  AI+A++  KL AF++D   L +  S  ++C+L    +    SG G   RKD  W  N + ++L+  EN  ++++   W     C+  ++ P T
Sbjct:  197 FDPGTK-NVTALLMEAKELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGEREISGNALRYAPDGILGLQL--INGKNESA-----HISDAVGVVAQAVHELLEKENIT---DPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSI-MNLQNRKLV--QVGIYN------GTHVIPNDRKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPN----DTSPGSPRHT--VPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLD----SFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEE---EDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPE-ERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQ--VELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEAS--QKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPAT 807          
The following BLAST results are available for this feature:
BLAST of TCONS_00008577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ16.863e-3925.89Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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