TCONS_00008555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008555
Unique NameTCONS_00008555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008555 ID=TCONS_00008555|Name=TCONS_00008555|organism=Clytia hemisphaerica|type=transcript|length=1067bp
ttgttaTATCATCTGCAAGCTGTTTTGGTATGAGGCATCTAATTCTAACG
GTGCACTGACAAAAGAATATGACATTAGAAGAAATAAAGATAGTCACTAC
AACATTTTTATGGTTTTCATTGCATTCAATTAAGTCGTTGTTTTTCAACA
CTCGTTTTGTTTACAAAGAAACAGATGGCCGAAGTCTGGCAATCAAATTC
AACCAAAAGACTTATAAATATGATGATATACAAAATGCTATGACTGCAAC
CATTCTTTTGGTCACATTGATTTTCTTATCTTTCATGTACGAAAATTATG
CTATATTGATTTTAATCATGACGGTTTGGGTATTCTTTTAAAAGTTTCAG
ATGGATTAGATCCTATTGATTGCAAATTAATTCAATGGTAAAGTCaatat
gtttttaatcaatgaaTTGGGTTTTGAGACTGGATTTTTATTCAGCTTCT
TTCAAATCACAAACACAAACtcttagaaaatgttttaattatTGTTTCAA
TTCTTTATTTCTAGTAGCACACATCACATATGTTTATATAATAAAAATAG
GgtacttttaaaagttttctttgcTTACACTTTTTAATAATTCATTAGAA
TTACTTTAGCAGATTGTTATCAAAATCTTTATGTCAAAATCTTTGCGTCC
AAAGCTTATGCATTTTCTTACATGATTACTGGGGTAAGATTTTCACACAA
TTAGGGGTTGATTTTTCTTACACATATATTATATGCCTAACGTGTATCAA
TCTTGGCAGGCAATTTTGGTGGATCAGCAGTTTTCGGCTAAAGCCTCCAA
ATtaaatcaacatttttgaaatcatgCGAACACCAAATTGAATACCTGTC
AGAATTGACATTATCTTTTGATTTGGGTAATTTTTTATTACtaatgcttt
aaaactttgcACGTACACATCAATACACTAacagtattttaattttttta
gattcaaatgtttgtatattttgtactgcaccttaaaatatattttttca
caaCTTGTATATAAGCATACCATTGGTTATTTATGAATTTTGTAAATTAT
TTGGATTGAGCAAAACG
Run BLAST on NCBI

transcript from alignment at sc0000086:545758..551366+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008555 ID=TCONS_00008555|Name=TCONS_00008555|organism=Clytia hemisphaerica|type=transcript|length=5609bp|location=Sequence derived from alignment at sc0000086:545758..551366+ (Clytia hemisphaerica)
ttgttaTATCATCTGCAAGCTGTTTTGGTATGAGGCATCTAATTCTAACG
GTGCACTGGTAAGCAACCTTTTCcacctttttaataattttgttcatact
ttgtattttgaatgtCTGCTTCCTTTGGGAATGTCCATTGGCTACCAGCT
TATGTCCTTTCTTGAgaaataagaaactttcaagCAATCATTGTCAACTG
AATCTATCACACCTATGAATGAAAAGTGAACTGGAAAAAGGATGAAAAAA
TGCTCCATTGCAACCCAACTCAGCTAAATACCATGTATATTCTGTGCTAT
CCTCCTTTAGCCATGCAGCTGCTACATGCATTCCAGGAGTGTATTCGTTT
TCCCTAGGATAGGACTCACGTTCAGTATCTTTAGATTGTCCTTCAATAGC
GGCTGCCTGATCTTCAGGTTGATCGATCTGTATTGAAACAAATGCTGATT
ATCCATGGTAGAGTAAACAAACTTAGTCCAGTACACTCCTGACTTTCTTA
Cttattatttttggacctacctaaggtagtcctttaaattgacccttgtc
cgttcgttcgttcgtccgttcgttcgtctgttgccagcttttctcgggat
cggctcattagttttttctaattttttgcacaatgatgcaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTGTATTTtgctaaatgctatatttt
ctgactgatttttttcatttttcttttcgcattgctaactaactttcatc
atcaggtaggtccatttagcatgttgcttgttttcttTGAAACTGATATG
ATAATCATGATTTTCAGAATTTAGATAGATATTCTTTCTCTTACCTTCTA
GGGCACACAAGATGTTTTTAAGATTAGCCATGGATATGCTTTTTGCTGCC
TTCGCTCTATCAAAGTATCTTTCTAAGCCATCCTGATAATCATCTGAGCT
GAGcttctttccatttttctttaatCTGTACATTGCCTTGTTATTACCAA
ATCCTGAACAAGCCTTGGCATATCTAACTACTCTGTACATACGATCAACC
TTCTCTTTACACTCTTCAAACGATTCCATGAATTTGATGACATCTTCTTT
GCATGTGGTCCAGGAATATCTTGACTTTTTAAAAACTGCAAATCTTTCAA
CCGTTTCTCTTCATTCTTTGCATTCAGTAAATCCTTTTCTTTGTAAcctt
tttcctggagctttctcatCTTCTCattccaatttaatttaatggACTCA
ATTGCTTTAGATTGTGCCTTGTATTTCCTAAATTCTCCTGGTGAAACTTT
TGACAAAACATCTGTTGAAGACTTTATGACTACCTTACGTGAAGCTGACT
CTAAATTTCTGGATCCAACTCTAACAGTGCAAGCATAGTTGAAGCAACAA
GAACAACATTTCTTTCTTCTCCTATATTGTGGACATCAACATATGCTTCA
AGCGTCTCCAATTCATCAGAGGTTGCTGTCGAGATTTTGAATACATTTTT
TCGTCATCTGCATTCTTACCAAACCCAAATATTGCTCCTTTCTGATGATG
AAATCCTTCTGCAAACTTCTCCAGTGCAATGCGAATGATCTTCTCAATCT
CTTTGGGATATTTGTTGATGTTTTCCTGCAGCGATTGTAATAGAAATTTC
TTCTTTGGAAGGGAATTTTGGAATGTGTCTTCAGAAACAAAGGTAAAGAC
TCTGTCCAATGTGAGGAGACAGGAAGCTTGTATCTCTGTCAGCTCTTTGT
AAAGTTGAGAAAAGCTTTTCAAGATCAGTGAATAATTTGTCTCTGTGTTC
ATCAACAATGCGTGATACGGTATTATCACATGGATGCCTAGAAATGAATA
GTGAAAGTTATGATATAGATGctaatcaaaaatagtgtgacattgtaaaa
aatgctcaaaaatcaactttttggaaTAACTCTTCATATTTTTTGAGTCA
GCCATAGAGATTTCACAGGGTAATAGACCTCAACGTGGagatatgattaa
aaaaaaaaatttgttatttgaGTCAAAATTGTGGCTGCAGatcaaaaatt
ctattttttttttaagtgtaaGCCACACGATATTGAAAAGTGATCTCTGA
ATGGGACCTTCTAGACTCGAAAGTACATACTTTTGCGTTGTTAAATGTAC
TTTTTTGTGGCTTTTTTGTCAGCCACATATTTTACTCACACTTCATGCTT
TAATATATTTAAGTTGAGTAAGCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTAGATAAATTATTCA
GCTTAACCATGGATGTATTTTGACATGTAAGCCACATGATGGCCTCATTC
TATGAGCAAAATAGTGGATGACATCAAAAATGTCAGGGGTTAATTTTTGA
TTAGCATCTATACTGCCTAAAAGActttacattacattacattacattat
tAACAACCAGTGGCCATAGTATGGCAAATACAATTGTTAAAACACATCAT
TATAAAATAAGCTTGATTAAAACTACCAATAGTACTAACCAAGTAAAGAG
ATGGCAGCAAAAATTGGTTTTAGGATTTCCATCTGTGCAAAACTTCTTTC
AATGATGGCAATGTTGTTTATGATGTCAGAATACTTTTCAAGGTAGGCAG
CAATGTCATCAATCAGATAGATCAAGCTGATGCAGCACACAGGCAGTCTG
TTGAATCTGGAATCTTTCAATGAAAGTGAGACATTCTCCTTTGGTTGGAT
AAATTCCCCAAAGTGAGTGCTGTAGTTCCAATGCTTTGCTAAGAAATCTT
TGCAAATGAAATTTGAGAGGCATTTCACTGCCTTGATGGGAAAAGATTCT
CTCCAAAAGTCAACATCAACATAGAAACAATCTGCCAATTTCTATACTAC
ATAATACTTATCTATTAGTTTAAACTTTATATTCCTAATTAAGTTACAAC
TACAAAACAatactatttaaaaaaatgttactTGAATAAAACTTAGAAAC
TTGTCATTGAGCCATCGTGTCTAAGTCTGGAGTTTGTTCAATTTTTGGca
agtttttgtaaattttaatcaaaaagctgaaaaagaaaCAATCAAAACTC
TTAATTGCTTGATTTTTGACCCCTTTTGGAATCTACATGAAATTTCTGAC
AATTTGGTATGTCACATGcctatgttttgaaaaagttgctacAAGCTTAT
TTTGTAGGTGGGTTTGCGCTATGGGCCCCGCAAAAGTGGGGTCTGGGGGA
CTCTTAAAAAGGGTCCCCcatcaaaaatttcacttttttacctgttttta
gGATATTTAGCAACTTTTGTACAAGGTCCactaattaaaatcaaaaaaaa
attctcacagTCCTATAATCGCCATTTTAAAACGTCTTGTTTTTTAACAG
ACAAAAGAATATGACATTAGAAGAAATAAAGATAGTCACTACAACATTTT
TATGGTTTTCATTGCATTCAATTAAGTCGTTGTTTTTCAACACTCGTTTT
GTTTACAAAGAAACAGATGGCCGAAGTCTGGCAATCAAATTCAACCAAAA
GACTTATAAATATGATGATATACAAAATGCTATGACTGCAACCATTCTTT
TGGTCACATTGATTTTCTTATCTTTCATGTACGAAAATTATGCTATATTG
ATTTTAATCATGACGGTTTGGGTATTCTTTTAAAAGTTTCAGATGGATTA
GATCCTATTGATTGCAAATTAATTCAATGGTAAAGTCaatatgtttttaa
tcaatgaaTTGGGTTTTGAGACTGGATTTTTATTCAGCTTCTTTCAAATC
ACAAACACAAACtcttagaaaatgttttaattatTGTTTCAATTCTTTAT
TTCTAGTAGCACACATCACATATGTTTATATAATAAAAATAGGgtacttt
taaaagttttctttgcTTACACTTTTTAATAATTCATTAGAATTACTTTA
GCAGATTGTTATCAAAATCTTTATGTCAAAATCTTTGCGTCCAAAGCTTA
TGCATTTTCTTACATGATTACTGGGGTAAGATTTTCACACAATTAGGGGT
TGATTTTTCTTACACATATATTATATGCCTAACGTGTATCAATCTTGGCA
GGCAATTTTGGTGGATCAGCAGTTTTCGGCTAAAGCCTCCAAATtaaatc
aacatttttgaaatcatgCGAACACCAAATTGAATACCTGTCAGAATTGA
CATTATCTTTTGATTTGGGTAATTTTTTATTACtaatgctttaaaacttt
gcACGTACACATCAATACACTAacagtattttaatttttttagattcaaa
tgtttgtatattttgtactgcaccttaaaatatattttttcacaaCTTGT
ATATAAGCATACCATTGGTTATTTATGAATTTTGTAAATTATTTGGATTG
AGCAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004788XLOC_004788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008555-exon-sc0000086-1491911889:545758..545815TCONS_00008555-exon-sc0000086-1491911889:545758..545815Clytia hemisphaericaexon
TCONS_00008555-exon-sc0000086-1510915933:545758..545815TCONS_00008555-exon-sc0000086-1510915933:545758..545815Clytia hemisphaericaexon
TCONS_00008555-exon-sc0000086-1575043694:545758..545815TCONS_00008555-exon-sc0000086-1575043694:545758..545815Clytia hemisphaericaexon
TCONS_00008555-exon-sc0000086-1491911889:550358..551366TCONS_00008555-exon-sc0000086-1491911889:550358..551366Clytia hemisphaericaexon
TCONS_00008555-exon-sc0000086-1510915933:550358..551366TCONS_00008555-exon-sc0000086-1510915933:550358..551366Clytia hemisphaericaexon
TCONS_00008555-exon-sc0000086-1575043694:550358..551366TCONS_00008555-exon-sc0000086-1575043694:550358..551366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:545758..551366 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.94342	1.24999	0.983175	0.45804	0.501857	0.35251	0.903739	0.547457	1.14986	0.258962	1.00542	0.743538	1.78751	1.79923	2.11316	1.31025	1.92453	1.27263	3.12082	3.77167	2.71857	3.10055	2.79721	2.75859	0.399555	1.06978	0.963869	0.181529	0.917891	0.748149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top