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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008554 ID=TCONS_00008554|Name=TCONS_00008554|organism=Clytia hemisphaerica|type=transcript|length=928bp
CTCACATATACCGAAGGTTGGCATGACAATATTACCAGGGCGTGGTTGTT
CTCTCCTTCCCATATAATCATACGCCACTTCGTTAGCCATGTTTTGCCAG
TTTGACCACGACACTCCATAAGCAATGAAACGCCCATCGAAAATCTCATT
AACCAGGAAGAAAGCTGacaaattggaaaaaatatatAGCATCTTGATCA
GATAGTTGGCGATGACTTTGGCACGCATTTGATTGAGATGATTCTGTGAG
GTACGACAGAAATATGCTTGTAGGATTTTATCAGCATCTTGCATGGATTT
GATGTCAGATTTGAGGAGCACCAGATCTGTGTTGACCAGCTTGAAGATAA
CGTAAGGTAGATAGAAGAATAATCCAAGAGCAGCAACGAAGAAAGGCATG
TATTGATATTGCAGAAAAAATCGTTTCTTCATTGGCACGCATTCTTCATC
CTTTGAATTCCCTCTGGTCGGGCTGGCGACGCAGAATTTGCCGTTGCTAG
CATATCGGCCGTCATTGTCCAGGTTTGTCGGTATACCGTAATAAGCGACG
GTATCTTTTTCTGGTAATATGGAGGGGTAAATGTAGAAGCCTTGCGTCCA
GCAGGCTTCCGACACGAAATCATACGATAATTTGACGTCAGGTGAGACCA
TGCAGTGAATCTTATCTGCGTACCAATTAAAACCCAAGAACAAAGTCCCA
ACGATCATCACCTTCACCATGAAAATGCGATTGTATCGATCGGAAAACGA
ATCATATCTGGTTTTTTGCGATACCGATAATATTTCACGGACGCTCTCTA
CTAAGCTTGCCATCTTTATTGTGTCTGGTTGACTTGATCAAAATCCAAAT
AATTTATATCAATCAACGCCCTTCCTTTAAGGGCGTTTCTTTAACCTTGC
TTTGTAGATTGTTTTCAACAGGGGTCAT Run BLAST on NCBI transcript from alignment at sc0000086:494104..495108+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008554 ID=TCONS_00008554|Name=TCONS_00008554|organism=Clytia hemisphaerica|type=transcript|length=1005bp|location=Sequence derived from alignment at sc0000086:494104..495108+ (Clytia hemisphaerica)
CTCACATATACCGAAGGTTGGCATGACAATATTACCAGGGCGTGGTTGTT
CTCTCCTTCCCATATAATCATACGCCACTTCGTTAGCCATGTTTTGCCAG
TTTGACCACGACACTCCATAAGCAATGAAACGCCCATCGAAAATCTCATT
AACCAGGAAGAAAGCTGacaaattggaaaaaatatatAGCATCTTGATCA
GATAGTTGGCGATGACTTTGGCACGCATTTGATTGAGATGATTCTGTGAG
GTACGACAGAAATATGCTTGTAGGATTTTATCAGCATCTTGCATGGATTT
GATGTCAGATTTGAGGAGCACCAGATCTGTGTTGACCAGCTTGAAGATAA
CGTAAGGTAGATAGAAGAATAATCCAAGAGCAGCAACGAAGAAAGGCATG
TATTGATATTGCAGAAAAAATCGTTTCTTCATTGGCACGCATTCTTCATC
CTTTGAATTCCCTCTGGTCGGGCTGGCGACGCAGAATTTGCCGTTGCTAG
CATATCGGCCGTCATTGTCCAGGTTTGTCGGTATACCGTAATAAGCGACG
GTATCTTTTTCTGGTAATATGGAGGGGTAAATGTAGAAGCCTTGCGTCCA
GCAGGCTTCCGACACGAAATCATACGATAATTTGACGTCAGGTGAGACCA
TGCAGTGAATCTTATCTGCGTACCAATTAAAACCCAAGAACAAAGTCCCA
ACGATCATCACCTTCACCATGAAAATGCGATTGTATCGATCGGAGAATGA
ATCATATCGAGTTTTCTGCGATACCGATAAAATTTCACGGACANCATGAA
AATGCGATTGTATCGATCGGAAAACGAATCATATCTGGTTTTTTGCGATA
CCGATAATATTTCACGGACGCTCTCTACTAAGCTTGCCATCTTTATTGTG
TCTGGTTGACTTGATCAAAATCCAAATAATTTATATCAATCAACGCCCTT
CCTTTAAGGGCGTTTCTTTAACCTTGCTTTGTAGATTGTTTTCAACAGGG
GTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008554-exon-sc0000086-1491911889:494104..494821 | TCONS_00008554-exon-sc0000086-1491911889:494104..494821 | Clytia hemisphaerica | exon |
| TCONS_00008554-exon-sc0000086-1510915933:494104..494821 | TCONS_00008554-exon-sc0000086-1510915933:494104..494821 | Clytia hemisphaerica | exon |
| TCONS_00008554-exon-sc0000086-1575043694:494104..494821 | TCONS_00008554-exon-sc0000086-1575043694:494104..494821 | Clytia hemisphaerica | exon |
| TCONS_00008554-exon-sc0000086-1491911889:494899..495108 | TCONS_00008554-exon-sc0000086-1491911889:494899..495108 | Clytia hemisphaerica | exon |
| TCONS_00008554-exon-sc0000086-1510915933:494899..495108 | TCONS_00008554-exon-sc0000086-1510915933:494899..495108 | Clytia hemisphaerica | exon |
| TCONS_00008554-exon-sc0000086-1575043694:494899..495108 | TCONS_00008554-exon-sc0000086-1575043694:494899..495108 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:494104..495108 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
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