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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008552 ID=TCONS_00008552|Name=TCONS_00008552|organism=Clytia hemisphaerica|type=transcript|length=2485bp
TTTTATTCTACAGGAACGTTATTATTATGTTTTGTTATCCCTTGCCCTTT
CTTTCATTATTCTAAATGACAATAGATCAGGAAAAATAAGGCGTCCTTTT
CGTAAAAAGCACATCAGAAGACCTGGTAATACACTCTTACTTTTATGAAC
CACCAATGTAAGGTCTTCATCACgaaaaaaccaaaacatttttttcattt
tttgcaagTTTATTTAATTTCTGTTTTTGTATACTTGCTTACTGTGGTCT
TTTTGctgatttgttgttgtttgtttgtttggtcTTCGGTGGTTTATCAC
GCATTTCACGCACCACTTTATATTGCACGATCAGAACCCGTTAAATCTAC
GTAGATAAGTTCCAGGGATTCTAACACATCAAAGTCATGGCACCTGTAAT
TCAAAACACCATCTTCCTCCAGAAGAATAATCCAAGTCAACTTCTGATCA
ATCAGGAAGAATTGGATACGACGAAACTAGACGAAGATGATCAACGAACG
AATctcattatcaattacttaccACAAGAGATGACAGAAGAAGAACTCAG
AACACTGTTTACATCCATTGGTGGTTTGGAGAGTTGCAAACTCATTCGTG
ATAAAGTCACCAAATCAAGTCTTGGTTATGCCTTTGTTAATTTTCAAGAC
TCAAGAGATGCAAGGAAAGCTATTCGTTCGTTACaaggaatgaaattaac
aacaAAGACGATCAAaGTCAGCTATGCAAGACCAAGTTCAAACGAAATCA
AGAACGCTAATCTCTACATCAGTGGGTTATCACAGACATGTGACGCAGTC
AGACTACGCGAATTATTCCAAAGTTACGGTGAGATTATCACAAGTAAAGT
TCTAGTTGATGAAAATGGTGTCAGTCGAGGTGTTGGTTTTGTTAGATTCG
ACAAACGTCGACAAGCTGAATTGTCCATTGAAGCTTTAAACAACAAAGTA
CCCAATCTACCAGGCTCTATCAAACCATTGACAGTTAAATTTGCTAATCC
TCCAAGTCAGAAAGTACAATCTTATGTTGATATCTTAGCACAAGCCAAAG
CTGGCATAGCCAGTGCTGGTTACTTACAAACGCAAGGAATCTATTCACCT
TTATCCGCTGCTGTGATGGCTTCAAATTCACCAGCCAATACTAATGGTTC
AGGATCCCCAACGTCTTTCAGTAACAGCTTCAATTCAAGCAGTAACAGTG
TTTTGAATAATCTTTCATCCACTCAATCTTCGGTTACAAGTTGGTGTGTT
TTTGTTTACAATCTCCCCTCTGATGCATCAGATCTTACATTGTTTCAACT
GTTCAGCAAACACGGTGCTATTCATTCTGTACGTGTCATCATCGACCATG
AGAAGAAATGCAGGGGGTATGGTTTTGTTAACATGGTCCATTATGAAGAC
GCACTGGCAGCGATTTTCCGTTTGAATGGTTATTGTTTAGAACGTGGAAA
GCCACTGCAGGTTTCTTTGAAACGACCGAAAACTGCCAGTGTCAGTTAAT
GATTCGCACCTCTTATTTgacagtttgaaattttgaaattggataaaaat
ttttgcaGAAATTTTTACTGTTAAagtttgttgaatatttttagCTTGTT
CAACATTTTTTCTATGTaaatgtttgttgttgttggaaagtgtttttcat
tttcagtccAATCCTTCGTTTTAACttaattttcgtttttattATTTGTG
ACGGGTTTAGAACTAGATATAGCTTTATTTCAGGTATaggttttcaacat
ttttctgtTCTGTCAAGATTTCTTTGAGATGTTTAAATTTGTTGCATGTT
GGTAGTAATTTCTTATTTACTTGTTTTGGGATAATTATAATACTTTTAGT
TTTACGGATTTATGGTTTTTTTATTATCGAtatttatttgaatttattcC
CCTCGCCGTTTATCGGTGAAATAAATTCTATCGACTTCTAAGCAAGCCGA
AAATGATGTTATGGTCAACCTAAAACCTAGGGAAACATCAAGCTTTAACC
TGCTCTTTAGCCCAAAATGATACTCGAGACTACTTCTGAGACTCAATATA
ATGTTTTGACGGCTCTTGCTATAAAAAAGATGCAAATTTTTAATCCTATT
CCTCTTAAGTTTTACAGGTTTAGGAAAATCCAAAAGATTGCGTATttata
aataatttgaatcAATAAATCTTCTTTGTAATTTGGTACATGGaatattt
tgtaaaatcttGAATTatctcattttttttgtaaaccaATATATAAGCCT
ATGATTTACATTGACTTTTCACAATATTTTGCTTTAGGGATGTCCATCAG
AGACAAAAAGTAAAGGGTTCAAGATAAGTGATCATTGTTTAACATATTTC
ATGAATTTCATCAGTAAATTGACTTTTGGAAGGGGTAAGATCTCATTGTC
TGAAGAAAATGAATGGAATGAAATCGAAGGTGTTACCTAGTACCCTATAC
AGTTTAGATTTCTCTAAAATTAACCTGTGTGGATG Run BLAST on NCBI protein sequence of TCONS_00008552-protein >TCONS_00008552-protein ID=TCONS_00008552-protein|Name=TCONS_00008552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MAPVIQNTIFLQKNNPSQLLINQEELDTTKLDEDDQRTNLIINYLPQEMT
EEELRTLFTSIGGLESCKLIRDKVTKSSLGYAFVNFQDSRDARKAIRSLQ
GMKLTTKTIKVSYARPSSNEIKNANLYISGLSQTCDAVRLRELFQSYGEI
ITSKVLVDENGVSRGVGFVRFDKRRQAELSIEALNNKVPNLPGSIKPLTV
KFANPPSQKVQSYVDILAQAKAGIASAGYLQTQGIYSPLSAAVMASNSPA
NTNGSGSPTSFSNSFNSSSNSVLNNLSSTQSSVTSWCVFVYNLPSDASDL
TLFQLFSKHGAIHSVRVIIDHEKKCRGYGFVNMVHYEDALAAIFRLNGYC
LERGKPLQVSLKRPKTASVS Run BLAST on NCBI transcript from alignment at sc0000086:466550..472404+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008552 ID=TCONS_00008552|Name=TCONS_00008552|organism=Clytia hemisphaerica|type=transcript|length=5855bp|location=Sequence derived from alignment at sc0000086:466550..472404+ (Clytia hemisphaerica)
TTTTATTCTACAGGAACGTTATTATTATGTTTTGTTATCCCTTGCCCTTT
CTTTCATTATTCTAAATGACAATAGATCAGGAAAAATAAGGCGTCCTTTT
CGTAAAAAGCACATCAGAAGACCTGGTAATACACTCTTACTTTTATGAAC
CACCAATGTAAGGTCTTCATCACgaaaaaaccaaaacatttttttcattt
tttgcaagTTTATTTAATTTCTGTTTTTGTATACTTGCTTACTGTGGTCT
TTTTGctgatttgttgttgtttgtttgtttggtcTTCGGTGGTTTATCAC
GCATTTCACGCACCACTTTATATTGCACGATCAGAACCCGTTAAATCTAC
GTAGATAAGTTCCAGGGATTCTAACACATCAAAGTCATGGCACCTGTAAT
TCAAAACACCATCTTCCTCCAGAAGAATAATCCAAGTCAACTTCTGATCA
ATCAGGTAAGCTAAAGTTATCCAACTTCAAAAACAATCCTCTTTTTTTGT
AAAGAATCTAAAGTTTTCTTGAGGATCTGGTTATGGTTTTCTTGTCTCAT
TCTTTTTGAATTTACTCCATTCCAATTCACAACTTTGTTCGGAatcaccc
ctgtctcttacgAAAAAGTCGTTTTTAACAAATATATGAAAACTCAGAGA
AAGTGGATATCATTGGGTATCATCCATTAAAATCCTTCAAATCTTTCACT
GAAAACACCTCTGTTCAGTAGAATTTGATGTCAATGGTGACGATTTAAAT
GACGAATAAGAGCATAATATTTCCACAACATTTCTTCTTCAAAATCTACT
TTTTCAAATACAGAGGATTTCAAGTTAtcgttcaaaaataaagaagggAT
TATTGGAATAGTAATCAGAATCAGAATTTTAGTGTAGTTCTCGATAGGGA
TGACTGtcaatttgattcttacaaacaCATGTGTGACAAGCTCGCTAGGA
CCCCAGCCCTCAgaaaaatttgcccaaaatttcatCCCTGGTGGAAAAAA
ATACCCCACAATTTCACTGGGAAATCTACTTTGAATTTAATAGAAAAAAT
TACGCTCCAAACCAATCCCCACTGGAAttattagaacaataaaatttatg
tCTACATTTGGATTTCCTCCACTGAGGGAAAATCTTCCAtcgaggctgtg
agacaggggtgtattggTATTTAGCTCGATCACTTGCTTTCCATAACTTT
ACATGAAaatcattttgttttttctgaattgCAATTAAATGGACACATAA
CTAGTTGTACCCATGTGCCCAAAAATTATTCCTGTGAGGGAAATGCCCTA
AAATGTTAGCCATATTTGAAGAAAGAATTGCACTCTTAAGTTTACACTAG
GAGATATGgttttttttagaaactttaatCACTGCCAGCGTGTTTGAGAT
AATGTTAACCTTGACTGTCTCTCTGTTGAAAGTTTATTACTATTTTAAAG
TACTGGAGAAAATttaatcatagtataagaaagccgcggctatGATTGAA
TCAACTAAAAATTTACAATTACAGAAAAAGAGAAAGGTCTATGCAGCATC
ATTTACACATGGTACATACTAGATACTAGAACATTACCCAAAATTTCAAT
TATATAAAACGAGTTCAAACTTAAAGTTATGAAATGAAGAATTTTGCAGA
GAGCCTCAGAAAACGtttccgatttttcaaggtTCGAAACCATATGCTAC
CAAAAGGAGAACGTATTTTCATactaaaatctttttaaatcgGCTACAAA
GTGTGGGCTCGTAACATAGAggggaaagaaaataaaatttcatgtttttc
acTTCATTTGCTATTGtgataaaattgtttcattttaacAGAGTGTTAAA
TGGAGATGATGCTCAATTCGTTTTTTTGCCTTTTGATGCACCtgctgttt
tggtgtttttattttgCCCTTTTTTCTGTTAGgtatgaaaatttagaaaa
tctttttaaccGCAACTTTTTCGGTGATCAAAACATGCTTTGTGAGAAAT
TAATTTCACATTTCCAAATTGATACAGGTTTTTGACAGCCTCGTTTTAAA
CACCTgaagaataaaatattttctaaaattcaaaatatgatGGATTTAAC
ATGATTTAAAACAAAAGTCTTTGGCATGGTAATTTTAGAACAAAAATAAG
ATATTTTAAATCACTTAATAACTGGAATTTATTCTTCAATAGCCGGCAGA
AGGCATATGTGAGGGTTGGATATACGGCAGATAGACTTTCTCAAATGact
catttttattcaataaagGGAATCTTATAGTAGAATTTCCAAAATCGAGT
GTCGGGGTAAAAACGCAACTAATCAAAtcatatttttgaagaaaatcgaG
TGTCGGGGTAAACGCAACCAATCAAAtcatatttttgaagaaaatcgaGT
GTCGGGGTAAACGCAACCAATCAAATCATATTTTTGAAGAAGTGAGCTGC
ACCTTCTAAAAaaacagaatttaaaaaatcttccatgtttttctttgctt
tcgtTTATCATCGTAGATGACATGAAAAATAGAAGaagttaaaaattgaa
aaattgaaatgaaaagtttattaaataattaGTGATGAACATAATAGatt
aaaaagttaaatttcttgaaaagtatgataaatatttccttttattCCAT
ATTCTTCCTCGCGTTCAGTTTTATTAATATTTCGAAGTTGTTTTAGGATT
TTTAGAGGACAAAGTTCGATAAATAAAATCAAAGCCTACCCGAGCAGGTC
GCAGATTTGAATACTCTACGGTAGTGGATTGTTTTATGGTCCATAAAACT
AAAACATGTTCTGAAAGATTTTCTCATAACCTCCCGAACCCCAGTGAAAG
TAGAGCCTTCTGCTGCAATGTGCTGGGTTAAGGTTTGAATCTCCGGCCTA
GtcaaatcaaatatttcaaacttcaTACAAAATGATGCTTATGGTGTCCC
CCTCTGCTTGATGGGTAACAGCTAAAAGAGAAGGAAAGGAACAAGGGATA
GATATATTTCGGAAGAAGAGAGCTTTCTGGTCATTACAGACAAATGGAAT
ATGTTGGAAAGAGCTTacaaaaaaaggcaaaacaatCTTGAAAATCTTCT
GTTCTCGCCCGCCTTCACTCTAGCAGTGCCAGAAAAAGTTTTAGAACAGA
GAAACAGGGAtgctattttgagaaaatttccaataaaatgaTGCAGCTAG
GTTgacattttaaagaaatttcactGAAGGGGTTCTTAATACGCTGATAC
AGCAAGGGTATAATTTTGAAGAGATTTTGGAATCCTCAAAACATTGATTG
ATACATGTGTGGTTTCCTGGAATATATTCTCAAAACATTGATGCAGAGGT
GGTTTTCTGGAATATATTCTCAGAACGTTGATGCAGGGGTGGTTTTCTAG
AATATATTCTCAAAATGTTGATACAAGGTTGTATCACTTCTTATTTTCAG
GAAGAATTGGATACGACGAAACTAGACGAAGATGATCAACGAACGAATct
cattatcaattacttaccACAAGAGATGACAGAAGAAGAACTCAGAACAC
TGTTTACATCCATTGGTGGTTTGGAGAGTTGCAAACTCATTCGTGATAAA
GTCACCAAATCAAGTCTTGGTTATGCCTTTGTTAATTTTCAAGACTCAAG
AGATGCAAGGAAAGCTATTCGTTCGTTACaaggaatgaaattaacaacaA
AGACGATCAAagtaagaatttcaaaatgatttttcacAAGTTAGTTACAA
CAATTTTGCGGTCAGTAAAAAAAATGCAGACACTAACCTTTAGACAACAT
TTGAGATATAATCACCCACATGGCAAGAGAAAGTTTCAAGCACACCCtta
attatgtgaaaaataatgTGTTAAGATCACCCATGTATCATCTCTTTTTT
tctcctgaaaatattttcgataAGGCAATGGAATAATATATTTtggaaca
ttcaaaattttcgtctTACATGTCACAAACATATTACTAGGAGTTCAGTA
ATATTAGTTAGTTCTATCTATctatcaaatgaaaattttccattgtcTAT
TGCTTTAGCTCATTGCTTATGATTTTTCTTCCATAGGTCAGCTATGCAAG
ACCAAGTTCAAACGAAATCAAGAACGCTAATCTCTACATCAGTGGGTTAT
CACAGACATGTGACGCAGTCAGACTACGCGAATTATTCCAAAGTTACGGT
GAGATTATCACAAGTAAAGTTCTAGTTGATGAAAATGGTGTCAGTCGAGG
TGTTGGTTTTGTTAGATTCGACAAACGTCGACAAGCTGAATTGTCCATTG
AAGCTTTAAACAACAAAGTACCCAATCTACCAGGCTCTATCAAACCATTG
ACAGTTAAATTTGCTAATCCTCCAAGTCAGAAAGTACAATCTTATGTTGA
TATCTTAGCACAAGCCAAAGCTGGCATAGCCAGTGCTGGTTACTTACAAA
CGCAAGGAATCTATTCACCTTTATCCGCTGCTGTGATGGCTTCAAATTCA
CCAGCCAATACTAATGGTTCAGGATCCCCAACGTCTTTCAGTAACAGCTT
CAATTCAAGCAGTAACAGTGTTTTGAATAATCTTTCATCCACTCAATCTT
CGGTTACAAGTTGGTGTGTTTTTGTTTACAATCTCCCCTCTGATGCATCA
GATCTTACATTGTTTCAACTGTTCAGCAAACACGGTGCTATTCATTCTGT
ACGTGTCATCATCGACCATGAGAAGAAATGCAGGGGGTATGGTTTTGTTA
ACATGGTCCATTATGAAGACGCACTGGCAGCGATTTTCCGTTTGAATGGT
TATTGTTTAGAACGTGGAAAGCCACTGCAGGTTTCTTTGAAACGACCGAA
AACTGCCAGTGTCAGTTAATGATTCGCACCTCTTATTTgacagtttgaaa
ttttgaaattggataaaaatttttgcaGAAATTTTTACTGTTAAagtttg
ttgaatatttttagCTTGTTCAACATTTTTTCTATGTaaatgtttgttgt
tgttggaaagtgtttttcattttcagtccAATCCTTCGTTTTAACttaat
tttcgtttttattATTTGTGACGGGTTTAGAACTAGATATAGCTTTATTT
CAGGTATaggttttcaacatttttctgtTCTGTCAAGATTTCTTTGAGAT
GTTTAAATTTGTTGCATGTTGGTAGTAATTTCTTATTTACTTGTTTTGGG
ATAATTATAATACTTTTAGTTTTACGGATTTATGGTTTTTTTATTATCGA
tatttatttgaatttattcCCCTCGCCGTTTATCGGTGAAATAAATTCTA
TCGACTTCTAAGCAAGCCGAAAATGATGTTATGGTCAACCTAAAACCTAG
GGAAACATCAAGCTTTAACCTGCTCTTTAGCCCAAAATGATACTCGAGAC
TACTTCTGAGACTCAATATAATGTTTTGACGGCTCTTGCTATAAAAAAGA
TGCAAATTTTTAATCCTATTCCTCTTAAGTTTTACAGGTTTAGGAAAATC
CAAAAGATTGCGTATttataaataatttgaatcAATAAATCTTCTTTGTA
ATTTGGTACATGGaatattttgtaaaatcttGAATTatctcatttttttt
gtaaaccaATATATAAGCCTATGATTTACATTGACTTTTCACAATATTTT
GCTTTAGGGATGTCCATCAGAGACAAAAAGTAAAGGGTTCAAGATAAGTG
ATCATTGTTTAACATATTTCATGAATTTCATCAGTAAATTGACTTTTGGA
AGGGGTAAGATCTCATTGTCTGAAGAAAATGAATGGAATGAAATCGAAGG
TGTTACCTAGTACCCTATACAGTTTAGATTTCTCTAAAATTAACCTGTGT
GGATG Coding sequence (CDS) from alignment at sc0000086:466550..472404+ >TCONS_00008552 ID=TCONS_00008552|Name=TCONS_00008552|organism=Clytia hemisphaerica|type=CDS|length=3339bp|location=Sequence derived from alignment at sc0000086:466550..472404+ (Clytia hemisphaerica)
ATGGCACCTGTAATTCAAAACACCATCTTCCTCCAGAAGAATAATCCAAG
TCAACTTCTGATCAATCAGGAAGAATTGGATACGACGAAACTAGACGAAG
ATGATCAACGAACGAATctcattatcaattacttaccACAAGAGATGACA
GAAGAAGAACTCAGAACACTGTTTACATCCATTGGTGGTTTGGAGAGTTG
CAAACTCATTCGTGATAAAGTCACCAAATCAAGTCTTGGTTATGCCTTTG
TTAATTTTCAAGACTCAAGAGATGCAAGGAAAGCTATTCGTTCGTTACaa
ggaatgaaattaacaacaAAGACGATCAAaGTCAGCTATGCAAGACCAAG
TTCAAACGAAATCAAGAACGCTAATCTCTACATCAGTGGGTTATCACAGA
CATGTGACGCAGTCAGACTACGCGAATTATTCCAAAGTTACGGTGAGATT
ATCACAAGTAAAGTTCTAGTTGATGAAAATGGTGTCAGTCGAGGTGTTGG
TTTTGTTAGATTCGACAAACGTCGACAAGCTGAATTGTCCATTGAAGCTT
TAAACAACAAAGTACCCAATCTACCAGGCTCTATCAAACCATTGACAGTT
AAATTTGCTAATCCTCCAAGTCAGAAAGTACAATCTTATGTTGATATCTT
AGCACAAGCCAAAGCTGGCATAGCCAGTGCTGGTTACTTACAAACGCAAG
GAATCTATTCACCTTTATCCGCTGCTGTGATGGCTTCAAATTCACCAGCC
AATACTAATGGTTCAGGATCCCCAACGTCTTTCAGTAACAGCTTCAATTC
AAGCAGTAACAGTGTTTTGAATAATCTTTCATCCACTCAATCTTCGGTTA
CAAGTTGGTGTGTTTTTGTTTACAATCTCCCCTCTGATGCATCAGATCTT
ACATTGTTTCAACTGTTCAGCAAACACGGTGCTATTCATTCTGTACGTGT
CATCATCGACCATGAGAAGAAATGCAGGGGGTATGGTTTTGTTAACATGG
TCCATTATGAAGACGCACTGGCAGCGATTTTCCGTTTGAATGGTTATTGT
TTAGAACGTGGAAAGCCACTGCAGGTTTCTTTGAAACGACCGAAAACTGC
CAGTGTCAGTTAAATGGCACCTGTAATTCAAAACACCATCTTCCTCCAGA
AGAATAATCCAAGTCAACTTCTGATCAATCAGGAAGAATTGGATACGACG
AAACTAGACGAAGATGATCAACGAACGAATctcattatcaattacttacc
ACAAGAGATGACAGAAGAAGAACTCAGAACACTGTTTACATCCATTGGTG
GTTTGGAGAGTTGCAAACTCATTCGTGATAAAGTCACCAAATCAAGTCTT
GGTTATGCCTTTGTTAATTTTCAAGACTCAAGAGATGCAAGGAAAGCTAT
TCGTTCGTTACaaggaatgaaattaacaacaAAGACGATCAAaGTCAGCT
ATGCAAGACCAAGTTCAAACGAAATCAAGAACGCTAATCTCTACATCAGT
GGGTTATCACAGACATGTGACGCAGTCAGACTACGCGAATTATTCCAAAG
TTACGGTGAGATTATCACAAGTAAAGTTCTAGTTGATGAAAATGGTGTCA
GTCGAGGTGTTGGTTTTGTTAGATTCGACAAACGTCGACAAGCTGAATTG
TCCATTGAAGCTTTAAACAACAAAGTACCCAATCTACCAGGCTCTATCAA
ACCATTGACAGTTAAATTTGCTAATCCTCCAAGTCAGAAAGTACAATCTT
ATGTTGATATCTTAGCACAAGCCAAAGCTGGCATAGCCAGTGCTGGTTAC
TTACAAACGCAAGGAATCTATTCACCTTTATCCGCTGCTGTGATGGCTTC
AAATTCACCAGCCAATACTAATGGTTCAGGATCCCCAACGTCTTTCAGTA
ACAGCTTCAATTCAAGCAGTAACAGTGTTTTGAATAATCTTTCATCCACT
CAATCTTCGGTTACAAGTTGGTGTGTTTTTGTTTACAATCTCCCCTCTGA
TGCATCAGATCTTACATTGTTTCAACTGTTCAGCAAACACGGTGCTATTC
ATTCTGTACGTGTCATCATCGACCATGAGAAGAAATGCAGGGGGTATGGT
TTTGTTAACATGGTCCATTATGAAGACGCACTGGCAGCGATTTTCCGTTT
GAATGGTTATTGTTTAGAACGTGGAAAGCCACTGCAGGTTTCTTTGAAAC
GACCGAAAACTGCCAGTGTCAGTTAAATGGCACCTGTAATTCAAAACACC
ATCTTCCTCCAGAAGAATAATCCAAGTCAACTTCTGATCAATCAGGAAGA
ATTGGATACGACGAAACTAGACGAAGATGATCAACGAACGAATctcatta
tcaattacttaccACAAGAGATGACAGAAGAAGAACTCAGAACACTGTTT
ACATCCATTGGTGGTTTGGAGAGTTGCAAACTCATTCGTGATAAAGTCAC
CAAATCAAGTCTTGGTTATGCCTTTGTTAATTTTCAAGACTCAAGAGATG
CAAGGAAAGCTATTCGTTCGTTACaaggaatgaaattaacaacaAAGACG
ATCAAaGTCAGCTATGCAAGACCAAGTTCAAACGAAATCAAGAACGCTAA
TCTCTACATCAGTGGGTTATCACAGACATGTGACGCAGTCAGACTACGCG
AATTATTCCAAAGTTACGGTGAGATTATCACAAGTAAAGTTCTAGTTGAT
GAAAATGGTGTCAGTCGAGGTGTTGGTTTTGTTAGATTCGACAAACGTCG
ACAAGCTGAATTGTCCATTGAAGCTTTAAACAACAAAGTACCCAATCTAC
CAGGCTCTATCAAACCATTGACAGTTAAATTTGCTAATCCTCCAAGTCAG
AAAGTACAATCTTATGTTGATATCTTAGCACAAGCCAAAGCTGGCATAGC
CAGTGCTGGTTACTTACAAACGCAAGGAATCTATTCACCTTTATCCGCTG
CTGTGATGGCTTCAAATTCACCAGCCAATACTAATGGTTCAGGATCCCCA
ACGTCTTTCAGTAACAGCTTCAATTCAAGCAGTAACAGTGTTTTGAATAA
TCTTTCATCCACTCAATCTTCGGTTACAAGTTGGTGTGTTTTTGTTTACA
ATCTCCCCTCTGATGCATCAGATCTTACATTGTTTCAACTGTTCAGCAAA
CACGGTGCTATTCATTCTGTACGTGTCATCATCGACCATGAGAAGAAATG
CAGGGGGTATGGTTTTGTTAACATGGTCCATTATGAAGACGCACTGGCAG
CGATTTTCCGTTTGAATGGTTATTGTTTAGAACGTGGAAAGCCACTGCAG
GTTTCTTTGAAACGACCGAAAACTGCCAGTGTCAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008552-exon-sc0000086-1491911889:466550..467004 | TCONS_00008552-exon-sc0000086-1491911889:466550..467004 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1510915933:466550..467004 | TCONS_00008552-exon-sc0000086-1510915933:466550..467004 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1575043694:466550..467004 | TCONS_00008552-exon-sc0000086-1575043694:466550..467004 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1491911889:470000..470260 | TCONS_00008552-exon-sc0000086-1491911889:470000..470260 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1510915933:470000..470260 | TCONS_00008552-exon-sc0000086-1510915933:470000..470260 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1575043694:470000..470260 | TCONS_00008552-exon-sc0000086-1575043694:470000..470260 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1491911889:470636..472404 | TCONS_00008552-exon-sc0000086-1491911889:470636..472404 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1510915933:470636..472404 | TCONS_00008552-exon-sc0000086-1510915933:470636..472404 | Clytia hemisphaerica | exon |
| TCONS_00008552-exon-sc0000086-1575043694:470636..472404 | TCONS_00008552-exon-sc0000086-1575043694:470636..472404 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:466550..472404 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00008552 vs. Swiss-Prot (Human)
Match: ELAV2 (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 281.567 bits (719), Expect = 3.636e-86 Identity = 162/352 (46.02%), Postives = 212/352 (60.23%), Query Frame = 3
Query: 495 RTNLIINYLPQEMTEEELRTLFTSIGGLESCKLIRDKVTKSSLGYAFVNFQDSRDARKAIRSLQGMKLTTKTIKVSYARPSSNEIKNANLYISGLSQTCDAVRLRELFQSYGEIITSKVLVDE-NGVSRGVGFVRFDKRRQAELSIEALNNKVPNLPGSIKPLTVKFANPPSQKV-------------QSYVDILAQAKAGIASAGYLQTQ-GI--YSPLSAAVMAS----NSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWCVFVYNLPSDASDLTLFQLFSKHGAIHSVRVIID-HEKKCRGYGFVNMVHYEDALAAIFRLNGYCLERGKPLQVSLKRPKT 1484
+TNLI+NYLPQ MT+EEL++LF SIG +ESCKL+RDK+T SLGY FVN+ D +DA KAI +L G++L TKTIKVSYARPSS I++ANLY+SGL +T L +LF YG IITS++LVD+ G+SRGVGF+RFDKR +AE +I+ LN + P PG+ +P+TVKFAN PSQK + Y LAQ L G+ +SP++ M S N P + WC+FVYNL DA + L+Q+F GA+ +V+VI D + KC+G+GFV M +Y++A AI LNGY L + LQVS K KT
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP--PGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTG------------------------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-RVLQVSFKTNKT 356
The following BLAST results are available for this feature:
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