TCONS_00008550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008550
Unique NameTCONS_00008550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008550 ID=TCONS_00008550|Name=TCONS_00008550|organism=Clytia hemisphaerica|type=transcript|length=1561bp
ATTTAAAGTAAGGCCTCCAAGATGGTCCAAGTCACTTCTATCACCGCGAA
GAGTTcgaattcaaaagttttcattttattcttcaTTCTTCTGACAGTGA
CAATTTTTAAAGATTCAATATTTTGTTTAAATCGTGAATATCAAAATGTC
CGAAACATCCAAGTGGTTCAACCAGGCCATGATCAGCCAACGTTTAACGC
CGAGACCGTGGTAAAAGCAATCGGTAAACTTATTATGAAGAGGAATGAga
aatttgattcaaaattgaaaCAGATGCAACATAACACAGATAATTCGatg
caaaaatttcttcaacttttatCCAAAGTAAGTTGCTCAGTGTTAAACGA
GACAATTCCACCGGAATCAACACTAATGAAACATCAGAATTGGTTCAAAA
GATACATTCTAATGAATTGAGTTCCACAGTAAACATAAGTAGCTGCTCTA
AGGATTTCAATAACTGGCTGGAGAGCAACAATGTCTCACAACACAGCCCA
GAGATTGATGTTTACATAAAAACGAATTGTGGTGAAGCAATTGAATGCAA
CAAAACTTCTCTTATTGGACCGCTCGCTGTTTTACAACAAGAGATCTCGT
TAGAATGGCTTTATGAGAACGAGCTCAAGTTTGTCAAGAAAGGAGGTTGG
TGGCAACCTGAAGATTGTAAACCAAAGCAATCGACTTTGATTGTAATCCC
GTTCCGAAACCGTGAATTGCAATTACCTATCCTTCTACGACAGTTACATC
CAATCTTAAAACGGCAGAAATTACACTACAGAATTCTAGTGGTGGAGCAA
ACTGGCCAAGATAAATTCAATAGAGCTAAATTATTCAATATCGGATTCGA
TCAAGGTTTGAAATTATTTCCATATCAATGTTTCATCGTACACGATGTTG
ATCTTCTACCTGAAAACGATAAAATCGATTACGGTTGCCAAGTTTCGCCG
AAACATTTATCAGCAGGTGTAAGCACTATGAGGTATATTCTCCCCTATAA
GGAAATCTTTGGTGGTGTTTCATCCTTGTGGTCCAAACATTACCGGCAAG
TTAACGGAGCTACCAATCTATTTTACGGATGGGGTGGCGAGGACGATAAT
TTGTATAATCGGTTACGGGCGAGCGGACTGACGGTACACCGACACTCTAT
TTCAGTTGCACGATACAAAATGCTGAAACATTCAAATAAAAACCGGCCAA
CTGGAAACGAGCAGTCGAAACTGAATCAAAAGCTGAGTAACTCCAATCGG
TATTTTGCTCAGGATGGTCTGAACACTTTACAGTATGACTTGGTTAGTGT
TNAGTCGAAACTGAATCAAAAGCTGAGTAACTCTAATCGGTATTTTGCTC
AGGATGGTCTGAATACTTTACAGTATGATTTGGTTAGTGTTGAAGAGAAG
CCACTTTATACTCACGTCAAAGCAAACTTAAGAATGgataaagaaaagtt
tttattttagtttgtgtGCTTGCGTCCGAAATTTTAGGGTATATTTTTAA
GatacttttattttcagttttaggATAGAAAAGAGatactaaaaaaatat
tttgaacaaaG
Run BLAST on NCBI

transcript from alignment at sc0000086:438835..440395+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008550 ID=TCONS_00008550|Name=TCONS_00008550|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0000086:438835..440395+ (Clytia hemisphaerica)
ATTTAAAGTAAGGCCTCCAAGATGGTCCAAGTCACTTCTATCACCGCGAA
GAGTTcgaattcaaaagttttcattttattcttcaTTCTTCTGACAGTGA
CAATTTTTAAAGATTCAATATTTTGTTTAAATCGTGAATATCAAAATGTC
CGAAACATCCAAGTGGTTCAACCAGGCCATGATCAGCCAACGTTTAACGC
CGAGACCGTGGTAAAAGCAATCGGTAAACTTATTATGAAGAGGAATGAga
aatttgattcaaaattgaaaCAGATGCAACATAACACAGATAATTCGatg
caaaaatttcttcaacttttatCCAAAGTAAGTTGCTCAGTGTTAAACGA
GACAATTCCACCGGAATCAACACTAATGAAACATCAGAATTGGTTCAAAA
GATACATTCTAATGAATTGAGTTCCACAGTAAACATAAGTAGCTGCTCTA
AGGATTTCAATAACTGGCTGGAGAGCAACAATGTCTCACAACACAGCCCA
GAGATTGATGTTTACATAAAAACGAATTGTGGTGAAGCAATTGAATGCAA
CAAAACTTCTCTTATTGGACCGCTCGCTGTTTTACAACAAGAGATCTCGT
TAGAATGGCTTTATGAGAACGAGCTCAAGTTTGTCAAGAAAGGAGGTTGG
TGGCAACCTGAAGATTGTAAACCAAAGCAATCGACTTTGATTGTAATCCC
GTTCCGAAACCGTGAATTGCAATTACCTATCCTTCTACGACAGTTACATC
CAATCTTAAAACGGCAGAAATTACACTACAGAATTCTAGTGGTGGAGCAA
ACTGGCCAAGATAAATTCAATAGAGCTAAATTATTCAATATCGGATTCGA
TCAAGGTTTGAAATTATTTCCATATCAATGTTTCATCGTACACGATGTTG
ATCTTCTACCTGAAAACGATAAAATCGATTACGGTTGCCAAGTTTCGCCG
AAACATTTATCAGCAGGTGTAAGCACTATGAGGTATATTCTCCCCTATAA
GGAAATCTTTGGTGGTGTTTCATCCTTGTGGTCCAAACATTACCGGCAAG
TTAACGGAGCTACCAATCTATTTTACGGATGGGGTGGCGAGGACGATAAT
TTGTATAATCGGTTACGGGCGAGCGGACTGACGGTACACCGACACTCTAT
TTCAGTTGCACGATACAAAATGCTGAAACATTCAAATAAAAACCGGCCAA
CTGGAAACGAGCAGTCGAAACTGAATCAAAAGCTGAGTAACTCCAATCGG
TATTTTGCTCAGGATGGTCTGAACACTTTACAGTATGACTTGGTTAGTGT
TNAGTCGAAACTGAATCAAAAGCTGAGTAACTCTAATCGGTATTTTGCTC
AGGATGGTCTGAATACTTTACAGTATGATTTGGTTAGTGTTGAAGAGAAG
CCACTTTATACTCACGTCAAAGCAAACTTAAGAATGgataaagaaaagtt
tttattttagtttgtgtGCTTGCGTCCGAAATTTTAGGGTATATTTTTAA
GatacttttattttcagttttaggATAGAAAAGAGatactaaaaaaatat
tttgaacaaaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004784XLOC_004784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008550-exon-sc0000086-1491911889:438835..440395TCONS_00008550-exon-sc0000086-1491911889:438835..440395Clytia hemisphaericaexon
TCONS_00008550-exon-sc0000086-1510915933:438835..440395TCONS_00008550-exon-sc0000086-1510915933:438835..440395Clytia hemisphaericaexon
TCONS_00008550-exon-sc0000086-1575043694:438835..440395TCONS_00008550-exon-sc0000086-1575043694:438835..440395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:438835..440395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.34212	0	0.636803	0.974134	0	0.128672	0	0	0.499758	0.436145	0	0.0159905	0.102106	0.135284	1.04156	1.63702	0.230223	0.526777	0.231227	0.572132	0.275863	0.271769	0	0	0	0
Blast
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BLAST of TCONS_00008550 vs. Swiss-Prot (Human)
Match: B4GT5 (Beta-1,4-galactosyltransferase 5 OS=Homo sapiens GN=B4GALT5 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.596e-64
Identity = 116/316 (36.71%), Postives = 174/316 (55.06%), Query Frame = 3 
Query:  348 RDNSTGINTNETSELVQKIHSNELSSTVNISSCSKDFNNWLESNNVSQHSPEIDVYIKTN-CGEAIECNKTSLIGPLAVLQQEISLEWLYE--NELKFVKKGGWWQPEDCKPKQSTLIVIPFRNRELQLPILLRQLHPILKRQKLHYRILVVEQTGQDKFNRAKLFNIGFDQGLKLFPYQCFIVHDVDLLPENDKIDYGCQVSPKHLSAGVSTMRYILPYKEIFGGVSSLWSKHYRQVNGATNLFYGWGGEDDNLYNRLRASGLTVHRHSISVARYKMLKHSNKNRPTGNEQSKLNQKLSNSNRYFAQDGLNTLQY 1286
            RDN   I      ++++  ++   +S+VN S    D N+       +   PE   Y   + C E +     S+ GP+ +   EI +++++E  ++   +K GG W+P DC P+    I+IPFRNR   LP+L R L P+L+RQ+L +   VVEQ G   FNRA LFN+GF + +K   + C I HDVD +PE+D+  YGC   P+H +  +    Y+LPY E FGGVS L  + +R++NG  N F+GWGGEDD+L+NR++ +G +V R      +YK + H ++       +  L   L  S      DGLN L Y
Sbjct:   54 RDNVRTIGAQVYEQVLRSAYAKR-NSSVNDSDYPLDLNHSETFLQTTTFLPEDFTYFANHTCPERL----PSMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRGEVQFLGRYAL---LRKSKERQGLDGLNNLNY 361
The following BLAST results are available for this feature:
BLAST of TCONS_00008550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT54.596e-6436.71Beta-1,4-galactosyltransferase 5 OS=Homo sapiens G... [more]
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