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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008549 ID=TCONS_00008549|Name=TCONS_00008549|organism=Clytia hemisphaerica|type=transcript|length=814bp TAATGATAAAGAATCGTAGATTCGGTATTATTTAAAGTAAGGCCTCCAAG ATGGTCCAAGTCACTTCTATCACCGCGAAGAGTTcgaattcaaaagtttt cattttattcttcaTTCTTCTGACAGTGACAATTTTTAAAGATTCAATAT TTTGTTTAAATCGTGAATATCAAAATGTCCGAAACATCCAAGTGGTTCAA CCAGGCCATGATCAGCCAACGTTTAACGCCGAGACCGTGGTAAAAGCAAT CGGTAAACTTATTATGAAGAGGAATGAgaaatttgattcaaaattgaaaC AGATGCAACATAACACAGATAATTCGatgcaaaaatttcttcaactttta tCCAAAGTAAGTTGCTCAGTGTTAAACGAGACAATTCCACCGGAATCAAC ACTAATGAAACATCAGAATTGGTTCAAAAGATACATTCTAATGAATTGAG TTCCACAGTAAACATAAGTAGCTGCTCTAAGGATTTCAATAACTGGCTGG AGAGCAACAATGTCTCACAACACAGCCCAGAGATTGATGTTTACATAAAA ACGAATTGTGGTGAAGCAATTGAATGCAACAAAACTTCTCTTATTGGACC GCTCGCTGTTTTACAACAAGAGATCTCGTTAGAATGGCTTTATGAGAACG AGCTCAAGTTTGTCAAGAAAGGAGGTTGGTGGCAACCTGAAGATTGTAAA CCAAAGCAATCGACTTTGATTGTAATCCCGTTCCGAAACCGTGAATTGCA ATTACCTATCCTTCTACGACAGTTACATCCAATCTTAAAGCGGCAGAATT TACACTATCGCATC Run BLAST on NCBI protein sequence of TCONS_00008549-protein >TCONS_00008549-protein ID=TCONS_00008549-protein|Name=TCONS_00008549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MVQVTSITAKSSNSKVFILFFILLTVTIFKDSIFCLNREYQNVRNIQVVQ PGHDQPTFNAETVVKAIGKLIMKRNEKFDSKLKQMQHNTDNSMQKFLQLL SKVSCSVLNETIPPESTLMKHQNWFKRYILMN Run BLAST on NCBI transcript from alignment at sc0000086:438806..442076+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008549 ID=TCONS_00008549|Name=TCONS_00008549|organism=Clytia hemisphaerica|type=transcript|length=3271bp|location=Sequence derived from alignment at sc0000086:438806..442076+ (Clytia hemisphaerica) TAATGATAAAGAATCGTAGATTCGGTATTATTTAAAGTAAGGCCTCCAAG
ATGGTCCAAGTCACTTCTATCACCGCGAAGAGTTcgaattcaaaagtttt
cattttattcttcaTTCTTCTGACAGTGACAATTTTTAAAGATTCAATAT
TTTGTTTAAATCGTGAATATCAAAATGTCCGAAACATCCAAGTGGTTCAA
CCAGGCCATGATCAGCCAACGTTTAACGCCGAGACCGTGGTAAAAGCAAT
CGGTAAACTTATTATGAAGAGGAATGAgaaatttgattcaaaattgaaaC
AGATGCAACATAACACAGATAATTCGatgcaaaaatttcttcaactttta
tCCAAAGTAAGTTGCTCAGTGTTAAACGAGACAATTCCACCGGAATCAAC
ACTAATGAAACATCAGAATTGGTTCAAAAGATACATTCTAATGAATTGAG
TTCCACAGTAAACATAAGTAGCTGCTCTAAGGATTTCAATAACTGGCTGG
AGAGCAACAATGTCTCACAACACAGCCCAGAGATTGATGTTTACATAAAA
ACGAATTGTGGTGAAGCAATTGAATGCAACAAAACTTCTCTTATTGGACC
GCTCGCTGTTTTACAACAAGAGATCTCGTTAGAATGGCTTTATGAGAACG
AGCTCAAGTTTGTCAAGAAAGGAGGTTGGTGGCAACCTGAAGATTGTAAA
CCAAAGCAATCGACTTTGATTGTAATCCCGTTCCGAAACCGTGAATTGCA
ATTACCTATCCTTCTACGACAGTTACATCCAATCTTAAAACGGCAGAAAT
TACACTACAGAATTCTAGTGGTGGAGCAAACTGGCCAAGATAAATTCAAT
AGAGCTAAATTATTCAATATCGGATTCGATCAAGGTTTGAAATTATTTCC
ATATCAATGTTTCATCGTACACGATGTTGATCTTCTACCTGAAAACGATA
AAATCGATTACGGTTGCCAAGTTTCGCCGAAACATTTATCAGCAGGTGTA
AGCACTATGAGGTATATTCTCCCCTATAAGGAAATCTTTGGTGGTGTTTC
ATCCTTGTGGTCCAAACATTACCGGCAAGTTAACGGAGCTACCAATCTAT
TTTACGGATGGGGTGGCGAGGACGATAATTTGTATAATCGGTTACGGGCG
AGCGGACTGACGGTACACCGACACTCTATTTCAGTTGCACGATACAAAAT
GCTGAAACATTCAAATAAAAACCGGCCAACTGGAAACGAGCAGTCGAAAC
TGAATCAAAAGCTGAGTAACTCCAATCGGTATTTTGCTCAGGATGGTCTG
AACACTTTACAGTATGACTTGGTTAGTGTTNAGTCGAAACTGAATCAAAA
GCTGAGTAACTCTAATCGGTATTTTGCTCAGGATGGTCTGAATACTTTAC
AGTATGATTTGGTTAGTGTTGAAGAGAAGCCACTTTATACTCACGTCAAA
GCAAACTTAAGAATGgataaagaaaagtttttattttagtttgtgtGCTT
GCGTCCGAAATTTTAGGGTATATTTTTAAGatacttttattttcagtttt
aggATAGAAAAGAGatactaaaaaaatattttgaacaaaGGGACATAAAA
TTGTATTAGTTATTTTTGCCACTGTTTATAGAGTAAATCCTTGCTTCACA
CTTCTCTATACAGCTGGAGCTACCCTGTATCACAGACATATTACAACATA
CCTTAAATCCCTNTGTTGAAGAGAAGCCACTTTATACTCACGTCAAAGCA
AACTTAAGAATGgataaagaaaagtttttattttagtttgtgtGCTTGCG
TCCGAAATTTTAGGGTATATTTTTAAGatacttttattttcagttttagg
ATAGAAAAGAGatactaaaaaaatattttgaacaaaGGGACATAAAATTG
TATTAGTTATTTTTGCCACTGTTTATAGAGTAAATCCTTGCTTCACACTT
CTCTATACAGCTGGAGCTACCCTGCATCACAGACATATTACAACATACTT
TAAATCCCTCTCTCTCTCATACTAAACCCCCCTCCTGATAAGAAAGGTAC
TATGAGGACTATGAAAGCCCCCACTGGAGACAATTTTCCCCTTTGGCTTG
GAATTATCGTGGTTTGATGACTAAGAATGTTCACTAAATTTATCTCGAAT
CTTACGAGTCTCAACTTAACATTTCATtacttgaaaaatgtaaaatatga
aCTTTTAGGGAGGCCGGTCTCTCACATTCTCGTGTCTTTTGTCTACTGAA
GTAATAAAGACACCttttttcagtaaattttgcaACCATTGCTTAATTAA
AACACCAGAAGGCGGAATAATTCAATGGAATATCACTTGGCAACTGCAAG
ATTCTGATAATTGATAAAGTATAAAGAATTTTCTGCTAACAAAACGTGTG
AAAATGTGATAAACTTCCGTGAGAGAGCTTGGCAAGTGGTAAACAAGGTT
AAAGATATAATGATAAAGAATCGTAGATTCGGTATTATTTAAAGTAAGGC
CTCCAAGATGGTCCAAGTCACTTCTATCACCGCGAAGAGTTcgaattcaa
aagttttcattttattcttcaTTCTTCTGACAGTGACAATTTTTAAAGAT
TCAATATTTTGTTTAAATCGTGAATATCAAAATGTCCGAAACATCCAAGT
GGTTCAACCAGGCCATGATCAGCCAACGTTTAACGCCGAGACCGTGGTAA
AAGCAATCGGTAAACTTATTATGAAGAGGAATGAgaaatttgattcaaaa
ttgaaaCAGATGCAACATAACACAGATAATTCGatgcaaaaatttcttca
acttttatCCAAAGTAAGTTGCTCAGTGTTAAACGAGACAATTCCACCGG
AATCAACACTAATGAAACATCAGAATTGGTTCAAAAGATACATTCTAATG
AATTGAGTTCCACATTAAACATAAGTAGCTGCTCTAAGGATTTCAATAAC
TGGCTGGAGAGCAACAATGTCTCACAACACAGCCCAGAGATTGATGTTCA
CATAAAAACGAATTGTGGTGAAGCAATTGAATGCAACAAAACTTCTCTTA
TTGGACCGCTCGCTGTTTTACAACAAGAGATCTCGTTAGAATGGCTTTAT
GAGAACGAGCTCAAGTTTGTCAAGAAAGGAGGATGGTGGCAACCTGAAGA
TTGTAAACCAAGACAATCCACTTTGATTGTAATCCCTTTCAGAAACCGTG
AATTGCAATTACCTATCCTTCTACGACAGTTACATCCAATCTTAAAGCGG
CAGAATTTACACTATCGCATC Coding sequence (CDS) from alignment at sc0000086:438806..442076+ >TCONS_00008549 ID=TCONS_00008549|Name=TCONS_00008549|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000086:438806..442076+ (Clytia hemisphaerica) ATGGTCCAAGTCACTTCTATCACCGCGAAGAGTTcgaattcaaaagtttt cattttattcttcaTTCTTCTGACAGTGACAATTTTTAAAGATTCAATAT TTTGTTTAAATCGTGAATATCAAAATGTCCGAAACATCCAAGTGGTTCAA CCAGGCCATGATCAGCCAACGTTTAACGCCGAGACCGTGGTAAAAGCAAT CGGTAAACTTATTATGAAGAGGAATGAgaaatttgattcaaaattgaaaC AGATGCAACATAACACAGATAATTCGatgcaaaaatttcttcaactttta tCCAAAGTAAGTTGCTCAGTGTTAAACGAGACAATTCCACCGGAATCAAC ACTAATGAAACATCAGAATTGGTTCAAAAGATACATTCTAATGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008549-exon-sc0000086-1491911889:438806..439581 | TCONS_00008549-exon-sc0000086-1491911889:438806..439581 | Clytia hemisphaerica | exon |
TCONS_00008549-exon-sc0000086-1510915933:438806..439581 | TCONS_00008549-exon-sc0000086-1510915933:438806..439581 | Clytia hemisphaerica | exon |
TCONS_00008549-exon-sc0000086-1575043694:438806..439581 | TCONS_00008549-exon-sc0000086-1575043694:438806..439581 | Clytia hemisphaerica | exon |
TCONS_00008549-exon-sc0000086-1491911889:442039..442076 | TCONS_00008549-exon-sc0000086-1491911889:442039..442076 | Clytia hemisphaerica | exon |
TCONS_00008549-exon-sc0000086-1510915933:442039..442076 | TCONS_00008549-exon-sc0000086-1510915933:442039..442076 | Clytia hemisphaerica | exon |
TCONS_00008549-exon-sc0000086-1575043694:442039..442076 | TCONS_00008549-exon-sc0000086-1575043694:442039..442076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:438806..442076 + |
Blast
The following BLAST results are available for this feature:
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