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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008547 ID=TCONS_00008547|Name=TCONS_00008547|organism=Clytia hemisphaerica|type=transcript|length=835bp
gaataatctggcccagaaaaaaatattttcaattatttgaTACAATCGAA
GCAGCCAAGAAAATCTAGCAATGGACGAGGttcaaataacaaaaacaaaa
ggaGCATTTTTAATGGAAAATCTTTATGGAGCTGTCGTTGATCACAATAA
TAAAACCACTAGCACAGATATTAATGTTACTTCCAACGATGATAGTAGCA
GTCATGATCAGGGTGGAGAAATAATCGATGTTATCAGTGAAACTGAATCT
AATTGTACTGAAGAACATTCATTGAATGAAACAGACAAGAAATTAGCTGA
CTCTTTATTAACAAATGAATTAGACTTATCAACGCTGTCATCTGATGAAG
AACAAGAAATATATTTCGAAGTTGTAATGAGagcaacaaaatacaaaatc
aaagCTCAAAATGATATTCTTGAGCTTCAACCAGACATTGATACAGTGAA
CGAAAGCGAGCCTGATATTTTGCACGACTTTTGGACTGGTGATGAAAATA
GATTACATCCTGGTCACTTTTCTTCCACTAGTGATGATGAAAACATGGAT
AGTATATTTGACgattatttttagatttttctaaattcGTTTTCTGGTAA
AGTAATTGTTTGATAATTGACTGGGGAAAGCATAACTAATTAATACAAGC
AAGTTTGCTCTTTAAAATAGTCTTTTAATTTCAAGCttgatattttgttt
gtttgtttatcataTGTTTCCATTTTGTTAAAATTAGCTCAATATTTTGA
TAGAAGGGATGAACTTAAAAGGGATAATCAACTATTCTTAGATAATGTTA
GAATGGCTCATTTTTAGCAGAAAATTCGCTAACCC Run BLAST on NCBI protein sequence of TCONS_00008547-protein >TCONS_00008547-protein ID=TCONS_00008547-protein|Name=TCONS_00008547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MDEVQITKTKGAFLMENLYGAVVDHNNKTTSTDINVTSNDDSSSHDQGGE
IIDVISETESNCTEEHSLNETDKKLADSLLTNELDLSTLSSDEEQEIYFE
VVMRATKYKIKAQNDILELQPDIDTVNESEPDILHDFWTGDENRLHPGHF
SSTSDDENMDSIFDDYF Run BLAST on NCBI transcript from alignment at sc0000086:383320..391403+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008547 ID=TCONS_00008547|Name=TCONS_00008547|organism=Clytia hemisphaerica|type=transcript|length=8084bp|location=Sequence derived from alignment at sc0000086:383320..391403+ (Clytia hemisphaerica)
gaataatctggcccagaaaaaaatattttcaattatttgaTACAATCGAA
GGTAATTGAAAAGTAatcgaaatgattgaacaaatcgaaaatggttgaag
aaaatgccataatctgGAGTTGAGTGAGTATTCAATCACCGATAAAATTG
ATAGGTTGTCATTGACCACCTTCGATTATTATCAACCATTATCGATTACT
TCAATCACAATCGAACATTCTATTGGTACAGTCCAGTCAGGACTTCcctt
cactttatcgatattacgcactTGGCAGTGTGTGCTATAATAttttgctt
tcgatttcaagcaaaggtcttagcaacaggatGCACGTTCATAACAacag
ggctgggtagaaaaatctaaacatagaatttaaaaaaaataccgatcatt
gTATAGAGCACCAGGGGGGGGGTACagccgcagggtactaacccatagcc
gggtggtggtgtctaatttggaaattcaaaaaagttagtacccggtacta
atttTGGGGTGGCGGTGGGTATATCTCCAATTttaagttagtacccggta
ccaATTTTAGGGTGGGGTGggtatcatttcaatttttcttcaagtactCA
GGCCCTGAATATGGtacatttgtttaatttttggaccgaccccggtgggg
tagaggtcctataaattaaccgatgtccgtccgtccgtccgtccgttcgt
tcgtccgtccgtccgtccgttcgttcgtccgtccgtctgttaccagcttt
tctcaggattggctcattagttttttctgatttttggcacaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAtttatttccggccgaaaatgccggaaa
tatgccggaaaaaacggttttttggcattttctcaagatttcatcattag
tttttttctgaatttttgcacaaagatgtgtattagaaatgcccaaaact
tggccgagtccgatttttgagaaaaatttttttccggtcgaaaatgccgg
aaatatgccggaaatcgccatttttgcagattttcatcggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNggccgaaaatgccggaaatatgccggaaaaaca
gtttttttggcattttctcgagattttatcaatagttttttctgattttt
tgctcaaagatgcttaataacaatgcccaaaacatggccgagtccgattt
ttgggaaaacattttttccggccgaaaataccggaaatatgccggaaaaa
ctgttttttggcattttctcgagattttatcattagtttttgctgatttt
ttgctcaaagatgcgtatcaACAATGCCCAAATTattgccgagtccgatt
tttgagaaaaagatttttccggccgaaaatgccggaaatcgccgtttttg
cagatttgaattgggctttttccatacatttctttgttttttcacttaaa
aaagttattgataacaatgccaccatcaagcatgattcaattgtcaataa
aacttttgcaattttgcaaccggaactttctatttcttttttccctaaac
ccctccccccctattaacaatcaatgatgacatttaatgcattttcgcta
agcgctttattttcttaatgattgtttttctccttattgctatctaagtt
tcatcgtcaggtaggtccattcagcatgttgcttgtttgtcTTCAAATTT
CAGGATTTTGATGAGGAAAGATTTCCTTGTTATGGCTTACAGTATCTGAC
AGTATTGAAAAGTTCCCCCTTCCAATTGAAGGTACTTTCCCTGCTTATCA
AGTATGTAGGGAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNttctcgtgcaatactcaatatttta
ctcgttccgagattttaccgattacggaaaaatctcggaactcgtaaaat
atttctcgtattgcactcgaagtcatgcgataactagtacatattATACC
CTATAGCTTATTTGGGTTTATATTTTGTTTGTCTGATTGTTTGTCTGTTT
ATGACAATTAAGACGGAGGCAGGTCAACTAAGCAAAGCCAACCAGAACCA
ACAATGCAACTATTTTCTATTTCAACTTCTTTCATAAGATTGACgcagtt
ttgaataatttgaataaattaccaatctattgaagaaaaaataaggaaat
tcaTCCAATCTAAGCTTTCTTactattcttaaatttttatcaACTTGATT
TTTACTTCTTCTGATAGATATATACTTTTATTGCCGTTATTAcagctata
taatattttacttttgccaaGGAATTTCCTTGTTTTACCTTTGTAATCAA
AAGTTGTGTTCgatttaaagaacttttaagAGGATCTGAGTTAAAAACAT
AGTATATACAAGTCATAATAACAACAAAGAGCTGCTTTTGCTGGCTTTTG
AAAGATTGGGACCATGCTTGGTAATTTTTAAGGGTGGTGTCTCCTATTTT
CCTTGGTAATTTTAAAGCcggtacccggtactaaaaagggggtgggggtc
cctttttctttaaaaaaaagtaagtacccggtactaaaagggggggtggg
ggtccctgtttccttaagaaaaagtaagtacccggtactaaaaagggggt
ggtggtacctaagacaatttttcttaaaaatcaggttagtaccctatggg
tcagtaccctgcggctgtacccccccccctgagagcactaaaaaataccc
cctttctatgtttagtttgttctaccttggattataaatgaaaatatctt
caaaaaatctttgtcCGCCATCAGCTCCCACAGTAATCTTTGtgcgcttc
aattcttagataacaaataagagaggtgcgcttagctaaccGTGCTCGCA
GACAATAAATTCATGTTTActtattttgtatattttagttgtatttatcc
aatgaaaaggatgttgataAAATATGCACAGCGCTGACAAAATGTACACG
GCAtagattatgacatcattaaatttGTCAATATCGATTCAACACTCGTT
AACCCTATTAATTATTATCAgcctttttcggattttgtattctcaagggg
aggggtgttttccaccagccttgcataacttttgatctagaaaagctATG
GACTTAAAacttggcagaaatgttctctaccatataAGGAATTCATAGAG
AAAaggggttgatgacgtcatcattaagGTAAATTTTGAGTTAAATTATC
TTTTagaattattattttaatttaatCCTATAGCTATAAAGATTATGGCT
TGATACTCCATACAGAATGCCTTATTCTAGCCTTGCCAAGTTTTGGACGG
AAGATTTGATATCACTTGAAAAGCGAGTTCAAAACTGTGAGGACAATACT
TCAATCAAACTAAATGATATTGACACTGTAAAAAATGCATATCTAACCAT
CAACAATtcaattaaagaaaaaattgatgatgatgatgatgatgatgacg
atgattcttcgctttctgatatgGAAAGGAGCGATGTGAGTGACAGTGAT
ACAAGTGACAGTGAAGCAGAAGTAGAAGATGAAAGTGGAGAAGAACAAGC
CGTGAATATAAATAAATCTGATGATACAAGTGATGACGACTGCAACTTTC
AATTATGTGAAAAAAGTGATACAACGAACATGTCTGACCTGAATAAATCA
ATTTCTTCAGTGGAGTGTTTTGATTCAGATGCTGAGCCTGATGTTTTGCA
AGATTTTGTGAGTTGCAATGAAAAAAGAACATATACTGGTAGCCTCTCAT
CTACTGATGATGAAAATATGGATAGTTTATATGACGATTTTACTTaaaaa
atttcccaattttTGAATTATATTTATTCTCTTTAAATCAAATTGGTATT
CAGAAATCTCAGGCAATTTTGCAAGATttgattttgtgaaatttgaaaTT
GCGTCTCATGAAAATTAAATCAAGTTtaggtaattttttttgttttttta
attttttattaattaAGCTTTCGATCATGTTCAGTCATAGAAATTCCAAA
TTATATataagataatttgtttttagtGTGTTTTATTCAAAGCTATGTAC
AgatcattaatttttatttttattctctGTTAAATCGTCTTACTTAATTT
ATTAAACTTTAACTCTctggggggggcactcatatgatcttgCCTACGTC
GTGTgtcgcgcttaagggtggggtttttcagcatcccaaaatgcactgta
aggactgcaagggtcgaattttaaaacgaATTCAAagtaattattaaaaa
gaaaggtttttacttctcgtttgtttgaaaaagtttctattaattgtctg
ataattacagctgacaagaataattttctcattttttcNcgagtgccccc
cccccccgagctTTAAATTAACCTTGattcaatttgaaaataccTTACAA
TGGAAAACGAGTTTTTTAAAGCTCAAAAGTTAGCCTTGTGATCTAAAAAA
TGTATTAGGAATGTCCAggctttgagctaagttaaGCTTCTTATacaaag
aaaacgtgtataacataataaaaacccattttccttcaaaaatacaggaa
ctgGATTTTCTctaaacacaaaagaaaaatttccttttaaCATACGGatg
aatagaaatattttgggaaattgCCTCTGAACAGGACAAATAGTAAATCA
CTAAGGGTTAGTGACTCTTACTTAtacaaggtttatttttctaaacGTAG
CAGCCAAGAAAATCTAGCAATGGACGAGGttcaaataacaaaaacaaaag
gaGCATTTTTAATGGAAAATCTTTATGGAGCTGTCGTTGATCACAATAAT
AAAACCACTAGCACAGATATTAATGTTACTTCCAACGATGATAGTAGCAG
TCATGATCAGGGTGGAGAAATAATCGATGTTATCAGTGAAACTGAATCTA
ATTGTACTGAAGAACATTCATTGAATGAAACAGACAAGAAATTAGCTGAC
TCTTTATTAACAAATGAATTAGACTTATCAACGCTGTCATCTGATGAAGA
ACAAGAAATATATTTCGAAGTTGTAATGAGagcaacaaaatacaaaatca
aagCTCAAAATGATATTCTTGAGCTTCAACCAGACATTGATACAGTGAAC
GAAAGCGAGCCTGATATTTTGCACGACTTTTGGACTGGTGATGAAAATAG
ATTACATCCTGGTCACTTTTCTTCCACTAGTGATGATGAAAACATGGATA
GTATATTTGACgattatttttagatttttctaaattcGTTTTCTGGTAAA
GTAATTGTTTGATAATTGACTGGGGAAAGCATAACTAATTAATACAAGCA
AGTTTGCTCTTTAAAATAGTCTTTTAATTTCAAGCttgatattttgtttg
tttgtttatcataTGTTTCCATTTTGTTAAAATTAGCTCAATATTTTGAT
AGAAGGGATGAACTTAAAAGGGATAATCAACTATTCTTAGATAATGTTAG
AATGGCTCATTTTTAGCAGAAAATTCGCTAACCC Coding sequence (CDS) from alignment at sc0000086:383320..391403+ >TCONS_00008547 ID=TCONS_00008547|Name=TCONS_00008547|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000086:383320..391403+ (Clytia hemisphaerica)
ATGGACGAGGttcaaataacaaaaacaaaaggaGCATTTTTAATGGAAAA
TCTTTATGGAGCTGTCGTTGATCACAATAATAAAACCACTAGCACAGATA
TTAATGTTACTTCCAACGATGATAGTAGCAGTCATGATCAGGGTGGAGAA
ATAATCGATGTTATCAGTGAAACTGAATCTAATTGTACTGAAGAACATTC
ATTGAATGAAACAGACAAGAAATTAGCTGACTCTTTATTAACAAATGAAT
TAGACTTATCAACGCTGTCATCTGATGAAGAACAAGAAATATATTTCGAA
GTTGTAATGAGagcaacaaaatacaaaatcaaagCTCAAAATGATATTCT
TGAGCTTCAACCAGACATTGATACAGTGAACGAAAGCGAGCCTGATATTT
TGCACGACTTTTGGACTGGTGATGAAAATAGATTACATCCTGGTCACTTT
TCTTCCACTAGTGATGATGAAAACATGGATAGTATATTTGACgattattt
ttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008547-exon-sc0000086-1491911889:383320..383370 | TCONS_00008547-exon-sc0000086-1491911889:383320..383370 | Clytia hemisphaerica | exon |
| TCONS_00008547-exon-sc0000086-1510915933:383320..383370 | TCONS_00008547-exon-sc0000086-1510915933:383320..383370 | Clytia hemisphaerica | exon |
| TCONS_00008547-exon-sc0000086-1575043694:383320..383370 | TCONS_00008547-exon-sc0000086-1575043694:383320..383370 | Clytia hemisphaerica | exon |
| TCONS_00008547-exon-sc0000086-1491911889:390620..391403 | TCONS_00008547-exon-sc0000086-1491911889:390620..391403 | Clytia hemisphaerica | exon |
| TCONS_00008547-exon-sc0000086-1510915933:390620..391403 | TCONS_00008547-exon-sc0000086-1510915933:390620..391403 | Clytia hemisphaerica | exon |
| TCONS_00008547-exon-sc0000086-1575043694:390620..391403 | TCONS_00008547-exon-sc0000086-1575043694:390620..391403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:383320..391403 + |
Blast
The following BLAST results are available for this feature:
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