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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008544 ID=TCONS_00008544|Name=TCONS_00008544|organism=Clytia hemisphaerica|type=transcript|length=1614bp
AGCCGGGCGactcttgttttctattcaatttcctttgttttgcaacaaag
aaaaatcgcCTTTGACGCGAGCTAAGTTATGCCACCAATTGAGAAGGAAG
CAAACATGGCGGGTCGAAGCGGTGATTTTGCTGctgttatttttgttatg
tCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATTGTT
TAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatcaaatga
tTTGTTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAAAGA
TAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTCATGGAATTCACTCG
AAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTCCTTGG
TAGAGAATGCCTTGAGCTGGACAAACACTCAATCAGTTGGAACCATGTGG
TACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTAATACATGA
TCAAATTAACAAGAGAACACATCGACTAAGTATGATGAACGTTTAAACTT
GCAGCTCAGtgtCTCAGTACTAGAGTCATGCTCTTCAGTATCAAAGGCAA
GCCCAAAACTAGAGCTTCTTACATTTCATGGATTGGAAATTGGAACCAGC
TTATATCATTTGTACCAATCGAAGAATGAAATATCAAtgcttttattttt
tcttgtttaTTGTTAACAATCACGAGGCACATTTCGATTtatgtaattct
tataaaaaaactgtgtACCCAGGATAGAATTTTACAAATACCATCTCTCA
ATTGCacttagaaaatttcaaaaatttttctttgcacTCTTagagaaaca
aaacaaatttttactgCATTTTGAGTGCCAGATACTGTATATAGCAGATC
AAATTTTGTGAAATAATGGTCTTTTTTGCTTGATGCTTctaatttaaatc
aaaattattcTTTGTTCGTAATTATAGAATCGTAACAATTTATGACCTTG
AATTTGATTTCGAAACTTTTTGCACCAAACAAAAGATAGATTTTTGAATT
CTCTTTGCaaataaattttgttaaatataattatatttttttttcatttt
tatataaaCATTTTGCTTTTATCACCAATTAAGTATTTTACAATGAAAAG
CGTGCCAATTTTAtgataacttttgaagaaattaatgacaatgtttttta
aataagtttATAGACTTTagtttttaaaactgttttactACCGCAaatta
cttttttatgatggaTAGTTGAAAATATCAAGTTGAGGAAAGATGTTTCT
CTACTCTTTTTGACTAATTGTTAGGGGGTCACTTTGCTACTTTTCCGATT
CTTCAACACCACCGCCCCGCCCCCAATTTCACTTTATTAGGACCCCTccc
ccattttatgactttttgcctcgaaattgcctaaaagtgccaaaaacctt
cattttcctggGGAAAATCACTAAATTCACTCCAATATCACTTTAATGTG
acctccccccccccattttatgactttttgcctcgaaattgcctaaaagt
gccaaaaaccttcattttcctggGGAAAATCACTAAATTCACTCCAATAT
CACTTTAATGtgac Run BLAST on NCBI transcript from alignment at sc0000086:338143..343110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008544 ID=TCONS_00008544|Name=TCONS_00008544|organism=Clytia hemisphaerica|type=transcript|length=4968bp|location=Sequence derived from alignment at sc0000086:338143..343110+ (Clytia hemisphaerica)
AGCCGGGCGactcttgttttctattcaatttcctttgttttgcaacaaag
aaaaatcgcCTTTGACGCGAGCTAAGTTATGCCACCAATTGAGAAGGAAG
CAAACATGGCGGGTCGAAGCGGTGATTTTGCTGctgttatttttgttatg
tCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATTGTT
TAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatcaaatga
tTTGTTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAAAGA
TAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTCATGGAATTCACTCG
AAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTCCTTGG
TAGAGAATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTGTGGTCTGGC
TCTTTTCACTGTGGTCTGGCTCTTTGAGTTCAGCCCATTTTTAAACTTCA
TGTACTCAACCGTCGACTAGGTAGTTCTTCCAGTTCTTGTTGTCTTTCAC
TTTGTTTACGTGATCAGCTAAAAGTTGGCAGTTAATTTCGAAAAGTTTGC
TTCTTGGTAATACTGAAGGAAGATATGGAAGAAGAATTTGAATTTCGTCG
CAAACAAACAGCTGCCTTAGTAAAGTAGTGTAGATTATTATGCAACCGGT
GCGTGATATGATAAGCCGattcatcataaaaagtaagacTGTAGAAAACT
TAAAGAGTTTGTGAGTGCTTTGTGAGTTGATATTACTAATGATGCTGTTG
ATGTTCATCCTGAGAAAATCTGTGAAAAGTGTAGAGTTGTTTGTACGAGT
TTGAATCAGTATTGAAAGGCACCCAGAGGCACCCAAGCTGAAAGTAGGAA
AAAAGAGAAAGCTAGGCATAAATCAACACAGTGTGTATAAGACAACAACA
GCATCAGATATTGATACCAGTGGTTTCGCAGATTGTGTTGATGGagagaa
aatttcagaaattaaagAGACCGTGGCTTTGTCTGTTATCTGATGGAGCT
TCTACAAACCGTTCATTTTATAAACTCAAAGAATAAGGAAGATACTGTAA
TTTCTTCAGCATTAATCTATGTGCTTTGGATAGAAATAAGCTCTACATAT
TTCATTTGTGAGgacaaaacaattttgaaaactctCATGGAAATAGAAGC
ACCAAAAATTTTGTAAGCCAATGGTTTGTCTATTATTTCCAGAGGAAATA
CCTTGAATGATATCAATGATgatttgtttgaaatatttatcaCTACCAGg
tgttgaaattcaaaaaaaattattgaaattatatGGTCTAATTCCTTTCC
TTTTAGCTGGACAAACACTCAATCAGTTGGAACCATGTGGTACAACTCTG
GGAGTTCAAGAATACTAAAATCCCAGGGCTTAATACATGATCAAATTAAC
AAGAGAACACATCGACTAAGTATGATGAACGTTTAAACTTGCAGCTCAGG
TAACTTAGATGATTACCATATTAACTCAAAAAAAGTGCCTAAATGTTATC
TAATCAGGCTAGGTAAAGTCTGAGAATTAGGTTTGTCTGAAATAAAATGG
CCTTTTTATATGACAATAAAAATCCCATGAtagtaggggccactatgtcg
cgaaaaagcttcccgtgtgcagcagcttgtgcaaagggattttatgattg
aatattgttccttgaatgtagaagatcaaaatttgagaggtggggctggg
tgtgaccacccgttgccatggaaactgacgtcattggttactatagCAAC
CAAtaaaaaagtcgtcaaaatagaagaaaaaaaaatccattcgaaagagc
atgaaaaactgttaaagaaaaaggtcacaacctatatctgaaaatgaata
tatcaggagatattaaggaaataagccaaaatgacgtcatgaaacaatga
cgtcatcgaaaaataaaaatttgccaaatttaaaaaatttttggtttttt
gaaaatcattgtttcatgacgtcattttgccttatttcctcaatatctcc
tgatatattcattttcagatatagcttgtgacctttttctttatcagttt
ttcatgctctttcgaatggaacaaaaaattttcaattttgacgacttttt
attttggttgccatagtaaccaatgacgtcaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATGACGTCAGTCtccatggcaac
gggtggtcacacccggctccacctctcaaattttgatcttctacattcaa
ggaacaatattcaatcataaaaaccctttgcacaagcttctgcacacggg
aagacatagtggcccctactaTGATATGTTATTCATGTATTCAGTTGTTG
TCAATGACATTGAAATGACTATAGCTACAAGTCTGGTCTCgataatttta
gtttgatgactAGCTTGATATAAacagaaattttgaataatttttctggG
CTCAACATCAAAACTTCCTGAGTGGCTTTTTCAACTGTGAAACACAAATA
TTGAATGTTTGGATGGTGACAAAGACTCTagcttattttcattatttgtc
ctggattccttttgaaaattacttcatttttattttagtgtCTCAGTACT
AGAGTCATGCTCTTCAGTATCAAAGGCAAGCCCAAAACTAGAGGTACACA
AAAGTTTGTCAGGATCTGcgacaaaatttttgattgcCTAAATGGGCAGT
ATCCTAACCAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGA
CAGTTTATATGCACTGTTTGATGAAATACGAAGCATTTATTAAGTGGCAA
GCAATAGAAATTGCAATTGGTAATTTGAAATGCTTTCAGTGGGTTCGTTT
AGACATCCTGGCATATGTAATTGCtttcgattttcttttgtttcaattgT
TATACACTATTGTTCAGTTTaccaaatgcctaatgatgccagcgagCGGT
AATTTGAAATGCCATTCTGAGCTAAGGAATCGCCATTTCTGGCATTTCAA
GCTAAACAAAGAAACTAAAACAAAGAACAAAATTGACATTTGTGACTTGT
TGAAGTGTCTGCACGCTTTCTATTCAGGTTTTTCTATAAACTATAAAATT
TGCATCTTTTGCTGTATCTCAAGGCTACGGCAAGCAGTGGGATaaacaat
caaaataaattctATTTGGAGTAATTGGCAATATGCCAGGATATGTAAAC
GCAACCAGTTTCAGTTTTAGAATAAAAGAATTGATAGTTAGATACTTTAA
atattaaaactaaaatttgtaAAACGTAAACATTGACAAAATTGGAGAAA
AGAGGGAGCGTCACTTAACATGTCCAATAAAATTTCCATCACGGATTACA
ctctttatttttataagaaccatgaaATTTGAGCTAAGGTCGTTGAGGCT
CAAAccgtttttaaatttttacactttcagcctcaaattgttcttaattt
gttcttattttttgagtttttttagcgggcattttttgttttgtttctat
tATTGCCCTATTTTTACCTTTGTTTGACGAAAAATAGACATTCCAGCCTT
Ggacttaaattgttcttaattttttaccattttgaacctcattgttctta
tataaaaagtgtAGTCCGTGAACGGGCTGTCAAGATGTAAAAACTTttga
ttgacttgaaattaatCTTTGAAATATAACATTGATAACTAACCACACAT
AAAAATTATACGGTACTTTTCCGTGGCTTTCTTGCCACCGTaattttact
ttcgatttcgaccATCTGTAACACGTAAACTTGCGCGGGTAAACGCGTTT
TGAAATGTCGATTTAGACATTGTATCATATGAGCTTTTGAGGTTCCCACA
ACTACTCAATATCGTCTGTATAATAATGCATTgaaccaaaattaaattta
attttgtttCTCGTTTAGCTTCTTACATTTCATGGATTGGAAATTGGAAC
CAGCTTATATCATTTGTACCAATCGAAGAATGAAATATCAAtgcttttat
tttttcttgtttaTTGTTAACAATCACGAGGCACATTTCGATTtatgtaa
ttcttataaaaaaactgtgtACCCAGGATAGAATTTTACAAATACCATCT
CTCAATTGCacttagaaaatttcaaaaatttttctttgcacTCTTagaga
aacaaaacaaatttttactgCATTTTGAGTGCCAGATACTGTATATAGCA
GATCAAATTTTGTGAAATAATGGTCTTTTTTGCTTGATGCTTctaattta
aatcaaaattattcTTTGTTCGTAATTATAGAATCGTAACAATTTATGAC
CTTGAATTTGATTTCGAAACTTTTTGCACCAAACAAAAGATAGATTTTTG
AATTCTCTTTGCaaataaattttgttaaatataattatatttttttttca
tttttatataaaCATTTTGCTTTTATCACCAATTAAGTATTTTACAATGA
AAAGCGTGCCAATTTTAtgataacttttgaagaaattaatgacaatgttt
tttaaataagtttATAGACTTTagtttttaaaactgttttactACCGCAa
attacttttttatgatggaTAGTTGAAAATATCAAGTTGAGGAAAGATGT
TTCTCTACTCTTTTTGACTAATTGTTAGGGGGTCACTTTGCTACTTTTCC
GATTCTTCAACACCACCGCCCCGCCCCCAATTTCACTTTATTAGGACCCC
Tcccccattttatgactttttgcctcgaaattgcctaaaagtgccaaaaa
ccttcattttcctggGGAAAATCACTAAATTCACTCCAATATCACTTTAA
TGTGacctccccccccccattttatgactttttgcctcgaaattgcctaa
aagtgccaaaaaccttcattttcctggGGAAAATCACTAAATTCACTCCA
ATATCACTTTAATGtgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008544-exon-sc0000086-1491911889:338143..338558 | TCONS_00008544-exon-sc0000086-1491911889:338143..338558 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1510915933:338143..338558 | TCONS_00008544-exon-sc0000086-1510915933:338143..338558 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1575043694:338143..338558 | TCONS_00008544-exon-sc0000086-1575043694:338143..338558 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1491911889:339499..339641 | TCONS_00008544-exon-sc0000086-1491911889:339499..339641 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1510915933:339499..339641 | TCONS_00008544-exon-sc0000086-1510915933:339499..339641 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1575043694:339499..339641 | TCONS_00008544-exon-sc0000086-1575043694:339499..339641 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1491911889:340781..340835 | TCONS_00008544-exon-sc0000086-1491911889:340781..340835 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1510915933:340781..340835 | TCONS_00008544-exon-sc0000086-1510915933:340781..340835 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1575043694:340781..340835 | TCONS_00008544-exon-sc0000086-1575043694:340781..340835 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1491911889:342111..343110 | TCONS_00008544-exon-sc0000086-1491911889:342111..343110 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1510915933:342111..343110 | TCONS_00008544-exon-sc0000086-1510915933:342111..343110 | Clytia hemisphaerica | exon |
| TCONS_00008544-exon-sc0000086-1575043694:342111..343110 | TCONS_00008544-exon-sc0000086-1575043694:342111..343110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:338143..343110 + |
Blast
The following BLAST results are available for this feature:
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