TCONS_00008540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008540
Unique NameTCONS_00008540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008540 ID=TCONS_00008540|Name=TCONS_00008540|organism=Clytia hemisphaerica|type=transcript|length=2909bp
GTTGCACGCAGCTGCTTTAAAGCCGGGCGactcttgttttctattcaatt
tcctttgttttgcaacaaagaaaaatcgcCTTTGACGCGAGCTAAGTTAT
GCCACCAATTGAGAAGGAAGCAAACATGGCGGGTCGAAGCGGTGATTTTG
CTGctgttatttttgttatgtCTATTCGAGTTATGACTAAAACAACGTCT
ACAGCAAGTACTACATTGTTTAAAACATCTCAAATGCTTTTggatatatt
tatttcaaccaatcaaatgatTTGTTTACGTTTTGACTAAGGATACAGTG
AAATTATCATCGAAGAAAGATAACCTGTCTTGTTGAGTAGCTAACAGCAC
CTACTCATGGAATTCACTCGAAATCGAAAAGatggacaatttttttcaaa
tagggAACAATTTTCCTTGGTAGAGAATGCCTTGAGCTGGACAAACACTC
AATCAGTTGGAACCATGTGGTACAACTCTGGGAGTTCAAGAATACTAAAA
TCCCAGGGCTTAATACATGATCAAATTAACAAGAGAACACATCGACTAAG
TATGATGAACGTTTAAACTTGCAGCTCAGtgtCTCAGTACTAGAGTCATG
CTCTTCAGTATCAAAGGCAAGCCCAAAACTAGAGGTACACAAAAGTTTGT
CAGGATCTGcgacaaaatttttgattgcCTAAATGGGCAGTATCCTAACC
AAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGACAGTTTATA
TGCACTGTTTGATGAAATACGAAGCATTTATTAAGTGGCAAGCAATAGAA
ATTGCAATTGGTAATTTGAAATGCTTTCAGTGGGTTCGTTTAGACATCCT
GGCATATGTAATTGCtttcgattttcttttgtttcaattgTTATACACTA
TTGTTCAGTTTaccaaatgcctaatgatgccagcgagCGGTAATTTGAAA
TGCCATTCTGAGCTAAGGAATCGCCATTTCTGGCATTTCAAGCTAAACAA
AGAAACTAAAACAAAGAACAAAATTGACATTTGTGACTTGTTGAAGTGTC
TGCACGCTTTCTATTCAGGTTTTTCTATAAACTATAAAATTTGCATCTTT
TGCTGTATCTCAAGGCTACGGCAAGCAGTGGGATaaacaatcaaaataaa
ttctATTTGGAGTAATTGGCAATATGCCAGGATATGTAAACGCAACCAGT
TTCAGTTTTAGAATAAAAGAATTGATAGTTAGATACTTTAAatattaaaa
ctaaaatttgtaAAACGTAAACATTGACAAAATTGGAGAAAAGAGGGAGC
GTCACTTAACATGTCCAATAAAATTTCCATCACGGATTACActctttatt
tttataagaaccatgaaATTTGAGCTAAGGTCGTTGAGGCTCAAAccgtt
tttaaatttttacactttcagcctcaaattgttcttaatttgttcttatt
ttttgagtttttttagcgggcattttttgttttgtttctattATTGCCCT
ATTTTTACCTTTGTTTGACGAAAAATAGACATTCCAGCCTTGgacttaaa
ttgttcttaattttttaccattttgaacctcattgttcttatataaaaag
tgtAGTCCGTGAACGGGCTGTCAAGATGTAAAAACTTttgattgacttga
aattaatCTTTGAAATATAACATTGATAACTAACCACACATAAAAATTAT
ACGGTACTTTTCCGTGGCTTTCTTGCCACCGTaattttactttcgatttc
gaccATCTGTAACACGTAAACTTGCGCGGGTAAACGCGTTTTGAAATGTC
GATTTAGACATTGTATCATATGAGCTTTTGAGGTTCCCACAACTACTCAA
TATCGTCTGTATAATAATGCATTgaaccaaaattaaatttaattttgttt
CTCGTTTAGCTTCTTACATTTCATGGATTGGAAATTGGAACCAGCTTATA
TCATTTGTACCAATCGAAGAATGAAATATCAAtgcttttattttttcttg
tttaTTGTTAACAATCACGAGGCACATTTCGATTtatgtaattcttataa
aaaaactgtgtACCCAGGATAGAATTTTACAAATACCATCTCTCAATTGC
acttagaaaatttcaaaaatttttctttgcacTCTTagagaaacaaaaca
aatttttactgCATTTTGAGTGCCAGATACTGTATATAGCAGATCAAATT
TTGTGAAATAATGGTCTTTTTTGCTTGATGCTTctaatttaaatcaaaat
tattcTTTGTTCGTAATTATAGAATCGTAACAATTTATGACCTTGAATTT
GATTTCGAAACTTTTTGCACCAAACAAAAGATAGATTTTTGAATTCTCTT
TGCaaataaattttgttaaatataattatatttttttttcatttttatat
aaaCATTTTGCTTTTATCACCAATTAAGTATTTTACAATGAAAAGCGTGC
CAATTTTAtgataacttttgaagaaattaatgacaatgttttttaaataa
gtttATAGACTTTagtttttaaaactgttttactACCGCAaattactttt
ttatgatggaTAGTTGAAAATATCAAGTTGAGGAAAGATGTTTCTCTACT
CTTTTTGACTAATTGTTAGGGGGTCACTTTGCTACTTTTCCGATTCTTCA
ACACCACCGCCCCGCCCCCAATTTCACTTTATTAGGACCCCTcccccatt
ttatgactttttgcctcgaaattgcctaaaagtgccaaaaaccttcattt
tcctggGGAAAATCACTAAATTCACTCCAATATCACTTTAATGTGacctc
cccccccccattttatgactttttgcctcgaaattgcctaaaagtgccaa
aaaccttcattttcctggGGAAAATCACTAAATTCACTCCAATATCACTT
TAATGtgac
Run BLAST on NCBI

transcript from alignment at sc0000086:338123..343110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008540 ID=TCONS_00008540|Name=TCONS_00008540|organism=Clytia hemisphaerica|type=transcript|length=4988bp|location=Sequence derived from alignment at sc0000086:338123..343110+ (Clytia hemisphaerica)
GTTGCACGCAGCTGCTTTAAAGCCGGGCGactcttgttttctattcaatt
tcctttgttttgcaacaaagaaaaatcgcCTTTGACGCGAGCTAAGTTAT
GCCACCAATTGAGAAGGAAGCAAACATGGCGGGTCGAAGCGGTGATTTTG
CTGctgttatttttgttatgtCTATTCGAGTTATGACTAAAACAACGTCT
ACAGCAAGTACTACATTGTTTAAAACATCTCAAATGCTTTTggatatatt
tatttcaaccaatcaaatgatTTGTTTACGTTTTGACTAAGGATACAGTG
AAATTATCATCGAAGAAAGATAACCTGTCTTGTTGAGTAGCTAACAGCAC
CTACTCATGGAATTCACTCGAAATCGAAAAGatggacaatttttttcaaa
tagggAACAATTTTCCTTGGTAGAGAATGCCTTGAGGTATGTATATCTGA
AGTTTCTAGTGTGGTCTGGCTCTTTTCACTGTGGTCTGGCTCTTTGAGTT
CAGCCCATTTTTAAACTTCATGTACTCAACCGTCGACTAGGTAGTTCTTC
CAGTTCTTGTTGTCTTTCACTTTGTTTACGTGATCAGCTAAAAGTTGGCA
GTTAATTTCGAAAAGTTTGCTTCTTGGTAATACTGAAGGAAGATATGGAA
GAAGAATTTGAATTTCGTCGCAAACAAACAGCTGCCTTAGTAAAGTAGTG
TAGATTATTATGCAACCGGTGCGTGATATGATAAGCCGattcatcataaa
aagtaagacTGTAGAAAACTTAAAGAGTTTGTGAGTGCTTTGTGAGTTGA
TATTACTAATGATGCTGTTGATGTTCATCCTGAGAAAATCTGTGAAAAGT
GTAGAGTTGTTTGTACGAGTTTGAATCAGTATTGAAAGGCACCCAGAGGC
ACCCAAGCTGAAAGTAGGAAAAAAGAGAAAGCTAGGCATAAATCAACACA
GTGTGTATAAGACAACAACAGCATCAGATATTGATACCAGTGGTTTCGCA
GATTGTGTTGATGGagagaaaatttcagaaattaaagAGACCGTGGCTTT
GTCTGTTATCTGATGGAGCTTCTACAAACCGTTCATTTTATAAACTCAAA
GAATAAGGAAGATACTGTAATTTCTTCAGCATTAATCTATGTGCTTTGGA
TAGAAATAAGCTCTACATATTTCATTTGTGAGgacaaaacaattttgaaa
actctCATGGAAATAGAAGCACCAAAAATTTTGTAAGCCAATGGTTTGTC
TATTATTTCCAGAGGAAATACCTTGAATGATATCAATGATgatttgtttg
aaatatttatcaCTACCAGgtgttgaaattcaaaaaaaattattgaaatt
atatGGTCTAATTCCTTTCCTTTTAGCTGGACAAACACTCAATCAGTTGG
AACCATGTGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCT
TAATACATGATCAAATTAACAAGAGAACACATCGACTAAGTATGATGAAC
GTTTAAACTTGCAGCTCAGGTAACTTAGATGATTACCATATTAACTCAAA
AAAAGTGCCTAAATGTTATCTAATCAGGCTAGGTAAAGTCTGAGAATTAG
GTTTGTCTGAAATAAAATGGCCTTTTTATATGACAATAAAAATCCCATGA
tagtaggggccactatgtcgcgaaaaagcttcccgtgtgcagcagcttgt
gcaaagggattttatgattgaatattgttccttgaatgtagaagatcaaa
atttgagaggtggggctgggtgtgaccacccgttgccatggaaactgacg
tcattggttactatagCAACCAAtaaaaaagtcgtcaaaatagaagaaaa
aaaaatccattcgaaagagcatgaaaaactgttaaagaaaaaggtcacaa
cctatatctgaaaatgaatatatcaggagatattaaggaaataagccaaa
atgacgtcatgaaacaatgacgtcatcgaaaaataaaaatttgccaaatt
taaaaaatttttggttttttgaaaatcattgtttcatgacgtcattttgc
cttatttcctcaatatctcctgatatattcattttcagatatagcttgtg
acctttttctttatcagtttttcatgctctttcgaatggaacaaaaaatt
ttcaattttgacgactttttattttggttgccatagtaaccaatgacgtc
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATG
ACGTCAGTCtccatggcaacgggtggtcacacccggctccacctctcaaa
ttttgatcttctacattcaaggaacaatattcaatcataaaaaccctttg
cacaagcttctgcacacgggaagacatagtggcccctactaTGATATGTT
ATTCATGTATTCAGTTGTTGTCAATGACATTGAAATGACTATAGCTACAA
GTCTGGTCTCgataattttagtttgatgactAGCTTGATATAAacagaaa
ttttgaataatttttctggGCTCAACATCAAAACTTCCTGAGTGGCTTTT
TCAACTGTGAAACACAAATATTGAATGTTTGGATGGTGACAAAGACTCTa
gcttattttcattatttgtcctggattccttttgaaaattacttcatttt
tattttagtgtCTCAGTACTAGAGTCATGCTCTTCAGTATCAAAGGCAAG
CCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGcgacaaaatttt
tgattgcCTAAATGGGCAGTATCCTAACCAAGATATGGCAACAAGAAAAC
CGGCAAAACCTGCTCTCAGACAGTTTATATGCACTGTTTGATGAAATACG
AAGCATTTATTAAGTGGCAAGCAATAGAAATTGCAATTGGTAATTTGAAA
TGCTTTCAGTGGGTTCGTTTAGACATCCTGGCATATGTAATTGCtttcga
ttttcttttgtttcaattgTTATACACTATTGTTCAGTTTaccaaatgcc
taatgatgccagcgagCGGTAATTTGAAATGCCATTCTGAGCTAAGGAAT
CGCCATTTCTGGCATTTCAAGCTAAACAAAGAAACTAAAACAAAGAACAA
AATTGACATTTGTGACTTGTTGAAGTGTCTGCACGCTTTCTATTCAGGTT
TTTCTATAAACTATAAAATTTGCATCTTTTGCTGTATCTCAAGGCTACGG
CAAGCAGTGGGATaaacaatcaaaataaattctATTTGGAGTAATTGGCA
ATATGCCAGGATATGTAAACGCAACCAGTTTCAGTTTTAGAATAAAAGAA
TTGATAGTTAGATACTTTAAatattaaaactaaaatttgtaAAACGTAAA
CATTGACAAAATTGGAGAAAAGAGGGAGCGTCACTTAACATGTCCAATAA
AATTTCCATCACGGATTACActctttatttttataagaaccatgaaATTT
GAGCTAAGGTCGTTGAGGCTCAAAccgtttttaaatttttacactttcag
cctcaaattgttcttaatttgttcttattttttgagtttttttagcgggc
attttttgttttgtttctattATTGCCCTATTTTTACCTTTGTTTGACGA
AAAATAGACATTCCAGCCTTGgacttaaattgttcttaattttttaccat
tttgaacctcattgttcttatataaaaagtgtAGTCCGTGAACGGGCTGT
CAAGATGTAAAAACTTttgattgacttgaaattaatCTTTGAAATATAAC
ATTGATAACTAACCACACATAAAAATTATACGGTACTTTTCCGTGGCTTT
CTTGCCACCGTaattttactttcgatttcgaccATCTGTAACACGTAAAC
TTGCGCGGGTAAACGCGTTTTGAAATGTCGATTTAGACATTGTATCATAT
GAGCTTTTGAGGTTCCCACAACTACTCAATATCGTCTGTATAATAATGCA
TTgaaccaaaattaaatttaattttgtttCTCGTTTAGCTTCTTACATTT
CATGGATTGGAAATTGGAACCAGCTTATATCATTTGTACCAATCGAAGAA
TGAAATATCAAtgcttttattttttcttgtttaTTGTTAACAATCACGAG
GCACATTTCGATTtatgtaattcttataaaaaaactgtgtACCCAGGATA
GAATTTTACAAATACCATCTCTCAATTGCacttagaaaatttcaaaaatt
tttctttgcacTCTTagagaaacaaaacaaatttttactgCATTTTGAGT
GCCAGATACTGTATATAGCAGATCAAATTTTGTGAAATAATGGTCTTTTT
TGCTTGATGCTTctaatttaaatcaaaattattcTTTGTTCGTAATTATA
GAATCGTAACAATTTATGACCTTGAATTTGATTTCGAAACTTTTTGCACC
AAACAAAAGATAGATTTTTGAATTCTCTTTGCaaataaattttgttaaat
ataattatatttttttttcatttttatataaaCATTTTGCTTTTATCACC
AATTAAGTATTTTACAATGAAAAGCGTGCCAATTTTAtgataacttttga
agaaattaatgacaatgttttttaaataagtttATAGACTTTagttttta
aaactgttttactACCGCAaattacttttttatgatggaTAGTTGAAAAT
ATCAAGTTGAGGAAAGATGTTTCTCTACTCTTTTTGACTAATTGTTAGGG
GGTCACTTTGCTACTTTTCCGATTCTTCAACACCACCGCCCCGCCCCCAA
TTTCACTTTATTAGGACCCCTcccccattttatgactttttgcctcgaaa
ttgcctaaaagtgccaaaaaccttcattttcctggGGAAAATCACTAAAT
TCACTCCAATATCACTTTAATGTGacctccccccccccattttatgactt
tttgcctcgaaattgcctaaaagtgccaaaaaccttcattttcctggGGA
AAATCACTAAATTCACTCCAATATCACTTTAATGtgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004781XLOC_004781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008540-exon-sc0000086-1491911889:338123..338558TCONS_00008540-exon-sc0000086-1491911889:338123..338558Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1510915933:338123..338558TCONS_00008540-exon-sc0000086-1510915933:338123..338558Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1575043694:338123..338558TCONS_00008540-exon-sc0000086-1575043694:338123..338558Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1491911889:339499..339641TCONS_00008540-exon-sc0000086-1491911889:339499..339641Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1510915933:339499..339641TCONS_00008540-exon-sc0000086-1510915933:339499..339641Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1575043694:339499..339641TCONS_00008540-exon-sc0000086-1575043694:339499..339641Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1491911889:340781..343110TCONS_00008540-exon-sc0000086-1491911889:340781..343110Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1510915933:340781..343110TCONS_00008540-exon-sc0000086-1510915933:340781..343110Clytia hemisphaericaexon
TCONS_00008540-exon-sc0000086-1575043694:340781..343110TCONS_00008540-exon-sc0000086-1575043694:340781..343110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:338123..343110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.282047	0	0.907733	0.181531	0.403993	0.163532	1.09455	0.155701	0.470381	0.0804044	0.155499	0.377738	0.123383	0.0919044	0.162128	0.00731794	0.00022497	0.162438	0.0387808	6.26213e-06	0.120607	0.713235	0	0.0495328	0.311252	0.463039
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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