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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008537 ID=TCONS_00008537|Name=TCONS_00008537|organism=Clytia hemisphaerica|type=transcript|length=952bp
cactgtactacggtacTTAGCCTACTGAAGAAGGACCAAGCACAAAATAT
ACATCTGAAACACAACAAACACGTCACGACCAGTTACAAAAATTCTGCGC
TACACATCAAAATATTCATTACACTCGGAAATATGATGCCAACTTGATGT
ATAGTCGAAAACAAAAGATCATGTATTGTCATATACCGAAAGTTGCATGC
TCCACGTGGAAAAAGATCATGGCATACTTTCTTGGACTTCTGAAATCACC
GTGGAAGGATGTCACCTTGGCAGAActttaCGGTTTCGACATTCCAAGTT
TTCAAACAGCATCCAATCTAActatcaatcaaatcaaaagcaACAAGAAT
TATTATTCCTTTATGTTTGCACGTCACCCTTACGACCGGTTATTTTCCGC
ATACCGGAACAAGTTTTTAGATCCGGTAAATCTTGGATATTTGAAACATT
ACGGACCTATGATCATCTCAATGGATGTGAATCCACTGTCACATCGAAAA
CGTTCGGATGGATTATATAGAATCACATTTGAACAGTTTGTTAAATTTGT
GATAAAAGCAGGACCAGATTTTGACGATCATTGGAGACCGCAGACCAGAA
TATGCCATATATGTGATCTAAAATACAAATATCTTGGCAAATTTGAAACT
ATGGAGAATGATGCTAattacattttcaaaacattgaatgaaagtttgaa
atttccaaaaatggcAGAATACAAACTGAAAACAACACAGATCTTAAAGA
AATATTACACAGAGTTACCGAAACCTTTGATGACgcagatttttgaattt
tatagaAATGATTTTGATGCTTTTGGTTATGACCCAAATTATTTCTTTTA
AcgtttaaagataacttttgaTGGATgcttttgctcttttttatattgta
attaatttatcaacttaaaaaaaattttaaatcgaAGATTTTGCAAATcg
ct Run BLAST on NCBI transcript from alignment at sc0000086:98312..100019+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008537 ID=TCONS_00008537|Name=TCONS_00008537|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at sc0000086:98312..100019+ (Clytia hemisphaerica)
cactgtactacggtacTTAGGTTAGTACATAGAACcgcctctacagattc
gaacgtttgcttcgaTAATTCTGCAGAAATTATGTTGCTTAACAAAAAGC
ATGTGAACCCTTATGCACCCATcatattttagctttttttatctctttta
gaTATATTCTCTTTCCTAACATTGACGAGAATCAAGGTAAAAAGTGTACC
AATCTTCTAGAGTGAAGCTACAAACGAACTGTCTTAATTGAAAACTAAAC
CTTCGATATTGAAGACTAAACCCTTCTATTGTAATCTGTCAAAGTCAATA
GGTGGTGTattattttcattaatttaatgaaaataattaatGCACGATTA
ATCATGTCGATCCTTACCAGAAAGGATATTGAAGCtcaattttatgattt
tcataacattcattctagatttttgtctTAATTCCTTAGCCTACTGAAGA
AGGACCAAGCACAAAATATACATCTGAAACACAACAAACACGTCACGACC
AGTTACAAAAATTCTGCGCTACACATCAAAATATTCATTACACTCGGAAA
TATGATGCCAACTTGATGTATAGTCGAAAACAAAAGATCATGTATTGTCA
TATACCGAAAGTTGCATGCTCCACGTGGAAAAAGATCATGGCATACTTTC
TTGGACTTCTGAAATCACCGTGGAAGGATGTCACCTTGGCAGAAGTAagt
aaaatattgattttcttcaTCTGAGACATCTGAAAGCTGtgcaaattcta
aaaataaaatttaaggatttTATGCTCTTTTCTTCTGCGGGATTtcctaa
aatataaatttatcgTCTACACAAAGTCACTAAAAAGTAATAATTTAGGA
AggtgataatattgaaagcagAGGCTAGTCCAGGGCGGGGTAAACAGTCT
CGGAGGTGTTCACACTGTTTTTACCAAGCTCTACCGCCACTATCTTTTCC
GTCGATCGTTCATTGCGGCTTTAATCTCGAGCTTGTATTTCCCTGCGTTT
ACTCTTATTtttgtattgatttttttttcagctttaCGGTTTCGACATTC
CAAGTTTTCAAACAGCATCCAATCTAActatcaatcaaatcaaaagcaAC
AAGAATTATTATTCCTTTATGTTTGCACGTCACCCTTACGACCGGTTATT
TTCCGCATACCGGAACAAGTTTTTAGATCCGGTAAATCTTGGATATTTGA
AACATTACGGACCTATGATCATCTCAATGGATGTGAATCCACTGTCACAT
CGAAAACGTTCGGATGGATTATATAGAATCACATTTGAACAGTTTGTTAA
ATTTGTGATAAAAGCAGGACCAGATTTTGACGATCATTGGAGACCGCAGA
CCAGAATATGCCATATATGTGATCTAAAATACAAATATCTTGGCAAATTT
GAAACTATGGAGAATGATGCTAattacattttcaaaacattgaatgaaag
tttgaaatttccaaaaatggcAGAATACAAACTGAAAACAACACAGATCT
TAAAGAAATATTACACAGAGTTACCGAAACCTTTGATGACgcagattttt
gaattttatagaAATGATTTTGATGCTTTTGGTTATGACCCAAATTATTT
CTTTTAAcgtttaaagataacttttgaTGGATgcttttgctcttttttat
attgtaattaatttatcaacttaaaaaaaattttaaatcgaAGATTTTGC
AAATcgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008537-exon-sc0000086-1491911889:98312..98331 | TCONS_00008537-exon-sc0000086-1491911889:98312..98331 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1510915933:98312..98331 | TCONS_00008537-exon-sc0000086-1510915933:98312..98331 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1575043694:98312..98331 | TCONS_00008537-exon-sc0000086-1575043694:98312..98331 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1491911889:98751..99005 | TCONS_00008537-exon-sc0000086-1491911889:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1510915933:98751..99005 | TCONS_00008537-exon-sc0000086-1510915933:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1575043694:98751..99005 | TCONS_00008537-exon-sc0000086-1575043694:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1491911889:99343..100019 | TCONS_00008537-exon-sc0000086-1491911889:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1510915933:99343..100019 | TCONS_00008537-exon-sc0000086-1510915933:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008537-exon-sc0000086-1575043694:99343..100019 | TCONS_00008537-exon-sc0000086-1575043694:99343..100019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:98312..100019 + |
Blast
BLAST of TCONS_00008537 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.039e-35 Identity = 87/289 (30.10%), Postives = 145/289 (50.17%), Query Frame = 3
Query: 51 TSETQQTRHDQLQKFCATHQNIHYTRKYDA-----NLMYSRKQKIMYCHIPKVACSTWKKIMAYFLGLLKSPWKDVTLAELYGFDIPSFQ--TASNL-TINQIK------SNKNYYSFMFARHPYDRLFSAYRNKFLDPVNLGYLKHYGPMIISM---DVNPLSHRKRSDGLYRITFEQFVKFVI----KAGPDFDDHWRPQTRICHICDLKYKYLGKFETMENDANYIFK--TLNESLKFPKMAEYKLKTTQILKKYYTELPKPLMTQIFEFYRNDFDAFGYD-PNYF 845
T+ Q R DQ+ C + R+ +L+ +++YC++PKVAC+ WK++M G + + D +IP+ + ++NL T+NQ K+Y F+F R P++RL SAYRNKF N+ + K YG II + + RK D + FE+FV ++I + F++HW+ +CH C + Y +GK+ET+E D+NY+ + + LKFP A+ T ++ +++ + TQ++E Y+ DF F Y P+Y
Sbjct: 74 TAVLHQMRRDQVTDTCRANSATSRKRRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTG--RGKYSD-------PMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDD----VKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYAKSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYL 349
The following BLAST results are available for this feature:
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