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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008536 ID=TCONS_00008536|Name=TCONS_00008536|organism=Clytia hemisphaerica|type=transcript|length=1056bp
gggaatctttggtatgacccggctgggggttgaacccacaaccttgcgaa
ccgtagccggatgctctaccactgtactacggtacTTAGaTATATTCTCT
TTCCTAACATTGACGAGAATCAAGCCTACTGAAGAAGGACCAAGCACAAA
ATATACATCTGAAACACAACAAACACGTCACGACCAGTTACAAAAATTCT
GCGCTACACATCAAAATATTCATTACACTCGGAAATATGATGCCAACTTG
ATGTATAGTCGAAAACAAAAGATCATGTATTGTCATATACCGAAAGTTGC
ATGCTCCACGTGGAAAAAGATCATGGCATACTTTCTTGGACTTCTGAAAT
CACCGTGGAAGGATGTCACCTTGGCAGAActttaCGGTTTCGACATTCCA
AGTTTTCAAACAGCATCCAATCTAActatcaatcaaatcaaaagcaACAA
GAATTATTATTCCTTTATGTTTGCACGTCACCCTTACGACCGGTTATTTT
CCGCATACCGGAACAAGTTTTTAGATCCGGTAAATCTTGGATATTTGAAA
CATTACGGACCTATGATCATCTCAATGGATGTGAATCCACTGTCACATCG
AAAACGTTCGGATGGATTATATAGAATCACATTTGAACAGTTTGTTAAAT
TTGTGATAAAAGCAGGACCAGATTTTGACGATCATTGGAGACCGCAGACC
AGAATATGCCATATATGTGATCTAAAATACAAATATCTTGGCAAATTTGA
AACTATGGAGAATGATGCTAattacattttcaaaacattgaatgaaagtt
tgaaatttccaaaaatggcAGAATACAAACTGAAAACAACACAGATCTTA
AAGAAATATTACACAGAGTTACCGAAACCTTTGATGACgcagatttttga
attttatagaAATGATTTTGATGCTTTTGGTTATGACCCAAATTATTTCT
TTTAAcgtttaaagataacttttgaTGGATgcttttgctcttttttatat
tgtaattaatttatcaacttaaaaaaaattttaaatcgaAGATTTTGCAA
ATcgct Run BLAST on NCBI transcript from alignment at sc0000086:98243..100019+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008536 ID=TCONS_00008536|Name=TCONS_00008536|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at sc0000086:98243..100019+ (Clytia hemisphaerica)
gggaatctttggtatgacccggctgggggttgaacccacaaccttgcgaa
ccgtagccggatgctctaccactgtactacggtacTTAGGTTAGTACATA
GAACcgcctctacagattcgaacgtttgcttcgaTAATTCTGCAGAAATT
ATGTTGCTTAACAAAAAGCATGTGAACCCTTATGCACCCATcatatttta
gctttttttatctcttttagaTATATTCTCTTTCCTAACATTGACGAGAA
TCAAGGTAAAAAGTGTACCAATCTTCTAGAGTGAAGCTACAAACGAACTG
TCTTAATTGAAAACTAAACCTTCGATATTGAAGACTAAACCCTTCTATTG
TAATCTGTCAAAGTCAATAGGTGGTGTattattttcattaatttaatgaa
aataattaatGCACGATTAATCATGTCGATCCTTACCAGAAAGGATATTG
AAGCtcaattttatgattttcataacattcattctagatttttgtctTAA
TTCCTTAGCCTACTGAAGAAGGACCAAGCACAAAATATACATCTGAAACA
CAACAAACACGTCACGACCAGTTACAAAAATTCTGCGCTACACATCAAAA
TATTCATTACACTCGGAAATATGATGCCAACTTGATGTATAGTCGAAAAC
AAAAGATCATGTATTGTCATATACCGAAAGTTGCATGCTCCACGTGGAAA
AAGATCATGGCATACTTTCTTGGACTTCTGAAATCACCGTGGAAGGATGT
CACCTTGGCAGAAGTAagtaaaatattgattttcttcaTCTGAGACATCT
GAAAGCTGtgcaaattctaaaaataaaatttaaggatttTATGCTCTTTT
CTTCTGCGGGATTtcctaaaatataaatttatcgTCTACACAAAGTCACT
AAAAAGTAATAATTTAGGAAggtgataatattgaaagcagAGGCTAGTCC
AGGGCGGGGTAAACAGTCTCGGAGGTGTTCACACTGTTTTTACCAAGCTC
TACCGCCACTATCTTTTCCGTCGATCGTTCATTGCGGCTTTAATCTCGAG
CTTGTATTTCCCTGCGTTTACTCTTATTtttgtattgatttttttttcag
ctttaCGGTTTCGACATTCCAAGTTTTCAAACAGCATCCAATCTAActat
caatcaaatcaaaagcaACAAGAATTATTATTCCTTTATGTTTGCACGTC
ACCCTTACGACCGGTTATTTTCCGCATACCGGAACAAGTTTTTAGATCCG
GTAAATCTTGGATATTTGAAACATTACGGACCTATGATCATCTCAATGGA
TGTGAATCCACTGTCACATCGAAAACGTTCGGATGGATTATATAGAATCA
CATTTGAACAGTTTGTTAAATTTGTGATAAAAGCAGGACCAGATTTTGAC
GATCATTGGAGACCGCAGACCAGAATATGCCATATATGTGATCTAAAATA
CAAATATCTTGGCAAATTTGAAACTATGGAGAATGATGCTAattacattt
tcaaaacattgaatgaaagtttgaaatttccaaaaatggcAGAATACAAA
CTGAAAACAACACAGATCTTAAAGAAATATTACACAGAGTTACCGAAACC
TTTGATGACgcagatttttgaattttatagaAATGATTTTGATGCTTTTG
GTTATGACCCAAATTATTTCTTTTAAcgtttaaagataacttttgaTGGA
Tgcttttgctcttttttatattgtaattaatttatcaacttaaaaaaaat
tttaaatcgaAGATTTTGCAAATcgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008536-exon-sc0000086-1491911889:98243..98331 | TCONS_00008536-exon-sc0000086-1491911889:98243..98331 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1510915933:98243..98331 | TCONS_00008536-exon-sc0000086-1510915933:98243..98331 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1575043694:98243..98331 | TCONS_00008536-exon-sc0000086-1575043694:98243..98331 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1491911889:98463..98497 | TCONS_00008536-exon-sc0000086-1491911889:98463..98497 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1510915933:98463..98497 | TCONS_00008536-exon-sc0000086-1510915933:98463..98497 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1575043694:98463..98497 | TCONS_00008536-exon-sc0000086-1575043694:98463..98497 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1491911889:98751..99005 | TCONS_00008536-exon-sc0000086-1491911889:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1510915933:98751..99005 | TCONS_00008536-exon-sc0000086-1510915933:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1575043694:98751..99005 | TCONS_00008536-exon-sc0000086-1575043694:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1491911889:99343..100019 | TCONS_00008536-exon-sc0000086-1491911889:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1510915933:99343..100019 | TCONS_00008536-exon-sc0000086-1510915933:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008536-exon-sc0000086-1575043694:99343..100019 | TCONS_00008536-exon-sc0000086-1575043694:99343..100019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:98243..100019 + |
Blast
BLAST of TCONS_00008536 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.131e-35 Identity = 83/282 (29.43%), Postives = 142/282 (50.35%), Query Frame = 2
Query: 155 TSETQQTRHDQLQKFCATHQNIHYTRKYDA-----NLMYSRKQKIMYCHIPKVACSTWKKIMAYFLGLLKSPWKD-VTLAELYGFDIPSFQTASNLTINQIKSN-KNYYSFMFARHPYDRLFSAYRNKFLDPVNLGYLKHYGPMIISM---DVNPLSHRKRSDGLYRITFEQFVKFVI----KAGPDFDDHWRPQTRICHICDLKYKYLGKFETMENDANYIFKT--LNESLKFPKMAEYKLKTTQILKKYYTELPKPLMTQIFEFYRNDFDAFGYD-PNYF 949
T+ Q R DQ+ C + R+ +L+ +++YC++PKVAC+ WK++M G + + D + + + +T + +I +I K+Y F+F R P++RL SAYRNKF N+ + K YG II + + RK D + FE+FV ++I + F++HW+ +CH C + Y +GK+ET+E D+NY+ + + LKFP A+ T ++ +++ + TQ++E Y+ DF F Y P+Y
Sbjct: 74 TAVLHQMRRDQVTDTCRANSATSRKRRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTG--RGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDD----VKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYAKSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYL 349
The following BLAST results are available for this feature:
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