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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008535 ID=TCONS_00008535|Name=TCONS_00008535|organism=Clytia hemisphaerica|type=transcript|length=1137bp
gtaaaaaaagaattagatCAAGTTTAGGCGGGTAATTAATTAATAAAGCG
GCACACGCCTGACCGCGTGACTACGGTTTATTTGTAGAAAACATTGAAAG
TAAACTCACACATTGTGATGAAGCCATACAATTCTTTATCGGTACTTCTC
TTCGGAATGGTGTTGGCTTGCGTCATATTGATCTTCAGGATGTCCGAACT
AAAAGCCTACTGAAGAAGGACCAAGCACAAAATATACATCTGAAACACAA
CAAACACGTCACGACCAGTTACAAAAATTCTGCGCTACACATCAAAATAT
TCATTACACTCGGAAATATGATGCCAACTTGATGTATAGTCGAAAACAAA
AGATCATGTATTGTCATATACCGAAAGTTGCATGCTCCACGTGGAAAAAG
ATCATGGCATACTTTCTTGGACTTCTGAAATCACCGTGGAAGGATGTCAC
CTTGGCAGAActttaCGGTTTCGACATTCCAAGTTTTCAAACAGCATCCA
ATCTAActatcaatcaaatcaaaagcaACAAGAATTATTATTCCTTTATG
TTTGCACGTCACCCTTACGACCGGTTATTTTCCGCATACCGGAACAAGTT
TTTAGATCCGGTAAATCTTGGATATTTGAAACATTACGGACCTATGATCA
TCTCAATGGATGTGAATCCACTGTCACATCGAAAACGTTCGGATGGATTA
TATAGAATCACATTTGAACAGTTTGTTAAATTTGTGATAAAAGCAGGACC
AGATTTTGACGATCATTGGAGACCGCAGACCAGAATATGCCATATATGTG
ATCTAAAATACAAATATCTTGGCAAATTTGAAACTATGGAGAATGATGCT
Aattacattttcaaaacattgaatgaaagtttgaaatttccaaaaatggc
AGAATACAAACTGAAAACAACACAGATCTTAAAGAAATATTACACAGAGT
TACCGAAACCTTTGATGACgcagatttttgaattttatagaAATGATTTT
GATGCTTTTGGTTATGACCCAAATTATTTCTTTTAAcgtttaaagataac
ttttgaTGGATgcttttgctcttttttatattgtaattaatttatcaact
taaaaaaaattttaaatcgaAGATTTTGCAAATcgct Run BLAST on NCBI transcript from alignment at sc0000086:96726..100019+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008535 ID=TCONS_00008535|Name=TCONS_00008535|organism=Clytia hemisphaerica|type=transcript|length=3294bp|location=Sequence derived from alignment at sc0000086:96726..100019+ (Clytia hemisphaerica)
gtaaaaaaagaattagatCAAGTTTAGGCGGGTAATTAATTAATAAAGCG
GCACACGCCTGACCGCGTGACTACGGTTTATTTGTAGAAAACATTGAAAG
TAAACTCACACATTGTGATGAAGCCATACAATTCTTTATCGGTACTTCTC
TTCGGAATGGTGTTGGCTTGCGTCATATTGATCTTCAGGATGTCCGAACT
AAAAGGTGAGAGAAAAatcgtttcttttttataagaacagttttCGTAAG
ATTAAGGTTCAAGTTTGCAAATCTTCAAAGTGAAATAACATTCTGACTTC
ATAAATTAGTTGACTTTTTCAACTGACCCTGAGTCCTTTTAGTGTAATTA
GCATAAACATATCTATGCTTAAATTCTCGAGACCATAAAAAGGCTAAAGC
CAAAATCTGCTACTGGTTCATAAAAAGAGGCTACACCGTTCTAtctctaa
attttcaatttttgatctactactcttgtctcccggaTAGACGTCCCCCc
actaattgttaagagaaaaaaaatccatccccctgctcttattaagaccc
ccctctaattaaattcgaataattcaatattttattacagtgtagataga
ccataaacttgttaaaattttccttttcgttagtattggttcttatttta
cgtgttcatttgttaaagtttcttttttgttgttaaaattGATATAAGTT
AAAAGAATTCTGTCTtcaaatccccccccccccctcttatttCATCCCCc
agcttattagaatttagaaaatgttcctaccccctgcttatttggacctc
ccgtctattcgggagacaagagtagctACTTacgcttttttcaaaaattg
aaatgatacaTTTTATATATGTAACATTAAAACATACCTCTTTCCTACCC
GGTGTTTACTTCGGGGAAATATAGTCAATGAAAATGACAGATTATTCTTT
TACAATTTATTAATATTTATTTGATAATCAAGTTATCGGTTCGGCACAAA
TCGTCTTCAATGTGCCAATAtgttatcaatttttttaatgttttttaatt
tctatcaaattttgGTGCTTGCCCACTTTTCCATTCCCACCCTTTCCATT
TCCCATCCCGCATTAAAGACAGTCtaaaaactattttcaaaacattgcaG
ATAATAGGTATTGATTTATAAGATCAATATAAAGCTTTTTCATTCTGGGA
AACGGGGATTTTCATCTTTAGTttagtagtaagtaagtctgcgaccacag
tcggaggcgacccgaaggctcctctttcgatagctatctacccgaaggta
ggggagggcgccactctttctcNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtcaagtaccattttgggaatctttggtatgacccggctgggggttga
acccacaaccttgcgaaccgtagccggatgctctaccactgtactacggt
acTTAGGTTAGTACATAGAACcgcctctacagattcgaacgtttgcttcg
aTAATTCTGCAGAAATTATGTTGCTTAACAAAAAGCATGTGAACCCTTAT
GCACCCATcatattttagctttttttatctcttttagaTATATTCTCTTT
CCTAACATTGACGAGAATCAAGGTAAAAAGTGTACCAATCTTCTAGAGTG
AAGCTACAAACGAACTGTCTTAATTGAAAACTAAACCTTCGATATTGAAG
ACTAAACCCTTCTATTGTAATCTGTCAAAGTCAATAGGTGGTGTattatt
ttcattaatttaatgaaaataattaatGCACGATTAATCATGTCGATCCT
TACCAGAAAGGATATTGAAGCtcaattttatgattttcataacattcatt
ctagatttttgtctTAATTCCTTAGCCTACTGAAGAAGGACCAAGCACAA
AATATACATCTGAAACACAACAAACACGTCACGACCAGTTACAAAAATTC
TGCGCTACACATCAAAATATTCATTACACTCGGAAATATGATGCCAACTT
GATGTATAGTCGAAAACAAAAGATCATGTATTGTCATATACCGAAAGTTG
CATGCTCCACGTGGAAAAAGATCATGGCATACTTTCTTGGACTTCTGAAA
TCACCGTGGAAGGATGTCACCTTGGCAGAAGTAagtaaaatattgatttt
cttcaTCTGAGACATCTGAAAGCTGtgcaaattctaaaaataaaatttaa
ggatttTATGCTCTTTTCTTCTGCGGGATTtcctaaaatataaatttatc
gTCTACACAAAGTCACTAAAAAGTAATAATTTAGGAAggtgataatattg
aaagcagAGGCTAGTCCAGGGCGGGGTAAACAGTCTCGGAGGTGTTCACA
CTGTTTTTACCAAGCTCTACCGCCACTATCTTTTCCGTCGATCGTTCATT
GCGGCTTTAATCTCGAGCTTGTATTTCCCTGCGTTTACTCTTATTtttgt
attgatttttttttcagctttaCGGTTTCGACATTCCAAGTTTTCAAACA
GCATCCAATCTAActatcaatcaaatcaaaagcaACAAGAATTATTATTC
CTTTATGTTTGCACGTCACCCTTACGACCGGTTATTTTCCGCATACCGGA
ACAAGTTTTTAGATCCGGTAAATCTTGGATATTTGAAACATTACGGACCT
ATGATCATCTCAATGGATGTGAATCCACTGTCACATCGAAAACGTTCGGA
TGGATTATATAGAATCACATTTGAACAGTTTGTTAAATTTGTGATAAAAG
CAGGACCAGATTTTGACGATCATTGGAGACCGCAGACCAGAATATGCCAT
ATATGTGATCTAAAATACAAATATCTTGGCAAATTTGAAACTATGGAGAA
TGATGCTAattacattttcaaaacattgaatgaaagtttgaaatttccaa
aaatggcAGAATACAAACTGAAAACAACACAGATCTTAAAGAAATATTAC
ACAGAGTTACCGAAACCTTTGATGACgcagatttttgaattttatagaAA
TGATTTTGATGCTTTTGGTTATGACCCAAATTATTTCTTTTAAcgtttaa
agataacttttgaTGGATgcttttgctcttttttatattgtaattaattt
atcaacttaaaaaaaattttaaatcgaAGATTTTGCAAATcgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008535-exon-sc0000086-1491911889:96726..96930 | TCONS_00008535-exon-sc0000086-1491911889:96726..96930 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1510915933:96726..96930 | TCONS_00008535-exon-sc0000086-1510915933:96726..96930 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1575043694:96726..96930 | TCONS_00008535-exon-sc0000086-1575043694:96726..96930 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1491911889:98751..99005 | TCONS_00008535-exon-sc0000086-1491911889:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1510915933:98751..99005 | TCONS_00008535-exon-sc0000086-1510915933:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1575043694:98751..99005 | TCONS_00008535-exon-sc0000086-1575043694:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1491911889:99343..100019 | TCONS_00008535-exon-sc0000086-1491911889:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1510915933:99343..100019 | TCONS_00008535-exon-sc0000086-1510915933:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008535-exon-sc0000086-1575043694:99343..100019 | TCONS_00008535-exon-sc0000086-1575043694:99343..100019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:96726..100019 + |
Blast
BLAST of TCONS_00008535 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 3.321e-35 Identity = 87/289 (30.10%), Postives = 145/289 (50.17%), Query Frame = 2
Query: 236 TSETQQTRHDQLQKFCATHQNIHYTRKYDA-----NLMYSRKQKIMYCHIPKVACSTWKKIMAYFLGLLKSPWKDVTLAELYGFDIPSFQ--TASNL-TINQIK------SNKNYYSFMFARHPYDRLFSAYRNKFLDPVNLGYLKHYGPMIISM---DVNPLSHRKRSDGLYRITFEQFVKFVI----KAGPDFDDHWRPQTRICHICDLKYKYLGKFETMENDANYIFK--TLNESLKFPKMAEYKLKTTQILKKYYTELPKPLMTQIFEFYRNDFDAFGYD-PNYF 1030
T+ Q R DQ+ C + R+ +L+ +++YC++PKVAC+ WK++M G + + D +IP+ + ++NL T+NQ K+Y F+F R P++RL SAYRNKF N+ + K YG II + + RK D + FE+FV ++I + F++HW+ +CH C + Y +GK+ET+E D+NY+ + + LKFP A+ T ++ +++ + TQ++E Y+ DF F Y P+Y
Sbjct: 74 TAVLHQMRRDQVTDTCRANSATSRKRRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTG--RGKYSD-------PMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDD----VKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYAKSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYL 349
The following BLAST results are available for this feature:
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