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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008534 ID=TCONS_00008534|Name=TCONS_00008534|organism=Clytia hemisphaerica|type=transcript|length=1298bp
TTTGATATTATTGAATATACTTTTTTGACCGTAGTTGCCAATTGCCGCGC
AGctattttttgtccgttttaccaacctaaaaccgtcccaatcttttttt
cgcacctatagacaatacaaaaaggtgtaaaaaaagaattagatCAAGTT
TAGGCGGGTAATTAATTAATAAAGCGGCACACGCCTGACCGCGTGACTAC
GGTTTATTTGTAGAAAACATTGAAAGTAAACTCACACATTGTGATGAAGC
CATACAATTCTTTATCGGTACTTCTCTTCGGAATGGTGTTGGCTTGCGTC
ATATTGATCTTCAGGATGTCCGAACTAAAAGaTATATTCTCTTTCCTAAC
ATTGACGAGAATCAAGCCTACTGAAGAAGGACCAAGCACAAAATATACAT
CTGAAACACAACAAACACGTCACGACCAGTTACAAAAATTCTGCGCTACA
CATCAAAATATTCATTACACTCGGAAATATGATGCCAACTTGATGTATAG
TCGAAAACAAAAGATCATGTATTGTCATATACCGAAAGTTGCATGCTCCA
CGTGGAAAAAGATCATGGCATACTTTCTTGGACTTCTGAAATCACCGTGG
AAGGATGTCACCTTGGCAGAActttaCGGTTTCGACATTCCAAGTTTTCA
AACAGCATCCAATCTAActatcaatcaaatcaaaagcaACAAGAATTATT
ATTCCTTTATGTTTGCACGTCACCCTTACGACCGGTTATTTTCCGCATAC
CGGAACAAGTTTTTAGATCCGGTAAATCTTGGATATTTGAAACATTACGG
ACCTATGATCATCTCAATGGATGTGAATCCACTGTCACATCGAAAACGTT
CGGATGGATTATATAGAATCACATTTGAACAGTTTGTTAAATTTGTGATA
AAAGCAGGACCAGATTTTGACGATCATTGGAGACCGCAGACCAGAATATG
CCATATATGTGATCTAAAATACAAATATCTTGGCAAATTTGAAACTATGG
AGAATGATGCTAattacattttcaaaacattgaatgaaagtttgaaattt
ccaaaaatggcAGAATACAAACTGAAAACAACACAGATCTTAAAGAAATA
TTACACAGAGTTACCGAAACCTTTGATGACgcagatttttgaattttata
gaAATGATTTTGATGCTTTTGGTTATGACCCAAATTATTTCTTTTAAcgt
ttaaagataacttttgaTGGATgcttttgctcttttttatattgtaatta
atttatcaacttaaaaaaaattttaaatcgaAGATTTTGCAAATcgct Run BLAST on NCBI protein sequence of TCONS_00008534-protein >TCONS_00008534-protein ID=TCONS_00008534-protein|Name=TCONS_00008534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MKPYNSLSVLLFGMVLACVILIFRMSELKDIFSFLTLTRIKPTEEGPSTK
YTSETQQTRHDQLQKFCATHQNIHYTRKYDANLMYSRKQKIMYCHIPKVA
CSTWKKIMAYFLGLLKSPWKDVTLAELYGFDIPSFQTASNLTINQIKSNK
NYYSFMFARHPYDRLFSAYRNKFLDPVNLGYLKHYGPMIISMDVNPLSHR
KRSDGLYRITFEQFVKFVIKAGPDFDDHWRPQTRICHICDLKYKYLGKFE
TMENDANYIFKTLNESLKFPKMAEYKLKTTQILKKYYTELPKPLMTQIFE
FYRNDFDAFGYDPNYFF Run BLAST on NCBI transcript from alignment at sc0000086:96600..100019+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008534 ID=TCONS_00008534|Name=TCONS_00008534|organism=Clytia hemisphaerica|type=transcript|length=3420bp|location=Sequence derived from alignment at sc0000086:96600..100019+ (Clytia hemisphaerica)
TTTGATATTATTGAATATACTTTTTTGACCGTAGTTGCCAATTGCCGCGC
AGctattttttgtccgttttaccaacctaaaaccgtcccaatcttttttt
cgcacctatagacaatacaaaaaggtgtaaaaaaagaattagatCAAGTT
TAGGCGGGTAATTAATTAATAAAGCGGCACACGCCTGACCGCGTGACTAC
GGTTTATTTGTAGAAAACATTGAAAGTAAACTCACACATTGTGATGAAGC
CATACAATTCTTTATCGGTACTTCTCTTCGGAATGGTGTTGGCTTGCGTC
ATATTGATCTTCAGGATGTCCGAACTAAAAGGTGAGAGAAAAatcgtttc
ttttttataagaacagttttCGTAAGATTAAGGTTCAAGTTTGCAAATCT
TCAAAGTGAAATAACATTCTGACTTCATAAATTAGTTGACTTTTTCAACT
GACCCTGAGTCCTTTTAGTGTAATTAGCATAAACATATCTATGCTTAAAT
TCTCGAGACCATAAAAAGGCTAAAGCCAAAATCTGCTACTGGTTCATAAA
AAGAGGCTACACCGTTCTAtctctaaattttcaatttttgatctactact
cttgtctcccggaTAGACGTCCCCCcactaattgttaagagaaaaaaaat
ccatccccctgctcttattaagacccccctctaattaaattcgaataatt
caatattttattacagtgtagatagaccataaacttgttaaaattttcct
tttcgttagtattggttcttattttacgtgttcatttgttaaagtttctt
ttttgttgttaaaattGATATAAGTTAAAAGAATTCTGTCTtcaaatccc
cccccccccctcttatttCATCCCCcagcttattagaatttagaaaatgt
tcctaccccctgcttatttggacctcccgtctattcgggagacaagagta
gctACTTacgcttttttcaaaaattgaaatgatacaTTTTATATATGTAA
CATTAAAACATACCTCTTTCCTACCCGGTGTTTACTTCGGGGAAATATAG
TCAATGAAAATGACAGATTATTCTTTTACAATTTATTAATATTTATTTGA
TAATCAAGTTATCGGTTCGGCACAAATCGTCTTCAATGTGCCAATAtgtt
atcaatttttttaatgttttttaatttctatcaaattttgGTGCTTGCCC
ACTTTTCCATTCCCACCCTTTCCATTTCCCATCCCGCATTAAAGACAGTC
taaaaactattttcaaaacattgcaGATAATAGGTATTGATTTATAAGAT
CAATATAAAGCTTTTTCATTCTGGGAAACGGGGATTTTCATCTTTAGTtt
agtagtaagtaagtctgcgaccacagtcggaggcgacccgaaggctcctc
tttcgatagctatctacccgaaggtaggggagggcgccactctttctcNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaagtaccattttgggaatc
tttggtatgacccggctgggggttgaacccacaaccttgcgaaccgtagc
cggatgctctaccactgtactacggtacTTAGGTTAGTACATAGAACcgc
ctctacagattcgaacgtttgcttcgaTAATTCTGCAGAAATTATGTTGC
TTAACAAAAAGCATGTGAACCCTTATGCACCCATcatattttagcttttt
ttatctcttttagaTATATTCTCTTTCCTAACATTGACGAGAATCAAGGT
AAAAAGTGTACCAATCTTCTAGAGTGAAGCTACAAACGAACTGTCTTAAT
TGAAAACTAAACCTTCGATATTGAAGACTAAACCCTTCTATTGTAATCTG
TCAAAGTCAATAGGTGGTGTattattttcattaatttaatgaaaataatt
aatGCACGATTAATCATGTCGATCCTTACCAGAAAGGATATTGAAGCtca
attttatgattttcataacattcattctagatttttgtctTAATTCCTTA
GCCTACTGAAGAAGGACCAAGCACAAAATATACATCTGAAACACAACAAA
CACGTCACGACCAGTTACAAAAATTCTGCGCTACACATCAAAATATTCAT
TACACTCGGAAATATGATGCCAACTTGATGTATAGTCGAAAACAAAAGAT
CATGTATTGTCATATACCGAAAGTTGCATGCTCCACGTGGAAAAAGATCA
TGGCATACTTTCTTGGACTTCTGAAATCACCGTGGAAGGATGTCACCTTG
GCAGAAGTAagtaaaatattgattttcttcaTCTGAGACATCTGAAAGCT
GtgcaaattctaaaaataaaatttaaggatttTATGCTCTTTTCTTCTGC
GGGATTtcctaaaatataaatttatcgTCTACACAAAGTCACTAAAAAGT
AATAATTTAGGAAggtgataatattgaaagcagAGGCTAGTCCAGGGCGG
GGTAAACAGTCTCGGAGGTGTTCACACTGTTTTTACCAAGCTCTACCGCC
ACTATCTTTTCCGTCGATCGTTCATTGCGGCTTTAATCTCGAGCTTGTAT
TTCCCTGCGTTTACTCTTATTtttgtattgatttttttttcagctttaCG
GTTTCGACATTCCAAGTTTTCAAACAGCATCCAATCTAActatcaatcaa
atcaaaagcaACAAGAATTATTATTCCTTTATGTTTGCACGTCACCCTTA
CGACCGGTTATTTTCCGCATACCGGAACAAGTTTTTAGATCCGGTAAATC
TTGGATATTTGAAACATTACGGACCTATGATCATCTCAATGGATGTGAAT
CCACTGTCACATCGAAAACGTTCGGATGGATTATATAGAATCACATTTGA
ACAGTTTGTTAAATTTGTGATAAAAGCAGGACCAGATTTTGACGATCATT
GGAGACCGCAGACCAGAATATGCCATATATGTGATCTAAAATACAAATAT
CTTGGCAAATTTGAAACTATGGAGAATGATGCTAattacattttcaaaac
attgaatgaaagtttgaaatttccaaaaatggcAGAATACAAACTGAAAA
CAACACAGATCTTAAAGAAATATTACACAGAGTTACCGAAACCTTTGATG
ACgcagatttttgaattttatagaAATGATTTTGATGCTTTTGGTTATGA
CCCAAATTATTTCTTTTAAcgtttaaagataacttttgaTGGATgctttt
gctcttttttatattgtaattaatttatcaacttaaaaaaaattttaaat
cgaAGATTTTGCAAATcgct Coding sequence (CDS) from alignment at sc0000086:96600..100019+ >TCONS_00008534 ID=TCONS_00008534|Name=TCONS_00008534|organism=Clytia hemisphaerica|type=CDS|length=3816bp|location=Sequence derived from alignment at sc0000086:96600..100019+ (Clytia hemisphaerica)
ATGAAGCCATACAATTCTTTATCGGTACTTCTCTTCGGAATGGTGTTGGC
TTGCGTCATATTGATCTTCAGGATGTCCGAACTAAAAGaTATATTCTCTT
TCCTAACATTGACGAGAATCAAGCCTACTGAAGAAGGACCAAGCACAAAA
TATACATCTGAAACACAACAAACACGTCACGACCAGTTACAAAAATTCTG
CGCTACACATCAAAATATTCATTACACTCGGAAATATGATGCCAACTTGA
TGTATAGTCGAAAACAAAAGATCATGTATTGTCATATACCGAAAGTTGCA
TGCTCCACGTGGAAAAAGATCATGGCATACTTTCTTGGACTTCTGAAATC
ACCGTGGAAGGATGTCACCTTGGCAGAActttaCGGTTTCGACATTCCAA
GTTTTCAAACAGCATCCAATCTAActatcaatcaaatcaaaagcaACAAG
AATTATTATTCCTTTATGTTTGCACGTCACCCTTACGACCGGTTATTTTC
CGCATACCGGAACAAGTTTTTAGATCCGGTAAATCTTGGATATTTGAAAC
ATTACGGACCTATGATCATCTCAATGGATGTGAATCCACTGTCACATCGA
AAACGTTCGGATGGATTATATAGAATCACATTTGAACAGTTTGTTAAATT
TGTGATAAAAGCAGGACCAGATTTTGACGATCATTGGAGACCGCAGACCA
GAATATGCCATATATGTGATCTAAAATACAAATATCTTGGCAAATTTGAA
ACTATGGAGAATGATGCTAattacattttcaaaacattgaatgaaagttt
gaaatttccaaaaatggcAGAATACAAACTGAAAACAACACAGATCTTAA
AGAAATATTACACAGAGTTACCGAAACCTTTGATGACgcagatttttgaa
ttttatagaAATGATTTTGATGCTTTTGGTTATGACCCAAATTATTTCTT
TTAAATGAAGCCATACAATTCTTTATCGGTACTTCTCTTCGGAATGGTGT
TGGCTTGCGTCATATTGATCTTCAGGATGTCCGAACTAAAAGaTATATTC
TCTTTCCTAACATTGACGAGAATCAAGCCTACTGAAGAAGGACCAAGCAC
AAAATATACATCTGAAACACAACAAACACGTCACGACCAGTTACAAAAAT
TCTGCGCTACACATCAAAATATTCATTACACTCGGAAATATGATGCCAAC
TTGATGTATAGTCGAAAACAAAAGATCATGTATTGTCATATACCGAAAGT
TGCATGCTCCACGTGGAAAAAGATCATGGCATACTTTCTTGGACTTCTGA
AATCACCGTGGAAGGATGTCACCTTGGCAGAActttaCGGTTTCGACATT
CCAAGTTTTCAAACAGCATCCAATCTAActatcaatcaaatcaaaagcaA
CAAGAATTATTATTCCTTTATGTTTGCACGTCACCCTTACGACCGGTTAT
TTTCCGCATACCGGAACAAGTTTTTAGATCCGGTAAATCTTGGATATTTG
AAACATTACGGACCTATGATCATCTCAATGGATGTGAATCCACTGTCACA
TCGAAAACGTTCGGATGGATTATATAGAATCACATTTGAACAGTTTGTTA
AATTTGTGATAAAAGCAGGACCAGATTTTGACGATCATTGGAGACCGCAG
ACCAGAATATGCCATATATGTGATCTAAAATACAAATATCTTGGCAAATT
TGAAACTATGGAGAATGATGCTAattacattttcaaaacattgaatgaaa
gtttgaaatttccaaaaatggcAGAATACAAACTGAAAACAACACAGATC
TTAAAGAAATATTACACAGAGTTACCGAAACCTTTGATGACgcagatttt
tgaattttatagaAATGATTTTGATGCTTTTGGTTATGACCCAAATTATT
TCTTTTAAATGAAGCCATACAATTCTTTATCGGTACTTCTCTTCGGAATG
GTGTTGGCTTGCGTCATATTGATCTTCAGGATGTCCGAACTAAAAGaTAT
ATTCTCTTTCCTAACATTGACGAGAATCAAGCCTACTGAAGAAGGACCAA
GCACAAAATATACATCTGAAACACAACAAACACGTCACGACCAGTTACAA
AAATTCTGCGCTACACATCAAAATATTCATTACACTCGGAAATATGATGC
CAACTTGATGTATAGTCGAAAACAAAAGATCATGTATTGTCATATACCGA
AAGTTGCATGCTCCACGTGGAAAAAGATCATGGCATACTTTCTTGGACTT
CTGAAATCACCGTGGAAGGATGTCACCTTGGCAGAActttaCGGTTTCGA
CATTCCAAGTTTTCAAACAGCATCCAATCTAActatcaatcaaatcaaaa
gcaACAAGAATTATTATTCCTTTATGTTTGCACGTCACCCTTACGACCGG
TTATTTTCCGCATACCGGAACAAGTTTTTAGATCCGGTAAATCTTGGATA
TTTGAAACATTACGGACCTATGATCATCTCAATGGATGTGAATCCACTGT
CACATCGAAAACGTTCGGATGGATTATATAGAATCACATTTGAACAGTTT
GTTAAATTTGTGATAAAAGCAGGACCAGATTTTGACGATCATTGGAGACC
GCAGACCAGAATATGCCATATATGTGATCTAAAATACAAATATCTTGGCA
AATTTGAAACTATGGAGAATGATGCTAattacattttcaaaacattgaat
gaaagtttgaaatttccaaaaatggcAGAATACAAACTGAAAACAACACA
GATCTTAAAGAAATATTACACAGAGTTACCGAAACCTTTGATGACgcaga
tttttgaattttatagaAATGATTTTGATGCTTTTGGTTATGACCCAAAT
TATTTCTTTTAAATGAAGCCATACAATTCTTTATCGGTACTTCTCTTCGG
AATGGTGTTGGCTTGCGTCATATTGATCTTCAGGATGTCCGAACTAAAAG
aTATATTCTCTTTCCTAACATTGACGAGAATCAAGCCTACTGAAGAAGGA
CCAAGCACAAAATATACATCTGAAACACAACAAACACGTCACGACCAGTT
ACAAAAATTCTGCGCTACACATCAAAATATTCATTACACTCGGAAATATG
ATGCCAACTTGATGTATAGTCGAAAACAAAAGATCATGTATTGTCATATA
CCGAAAGTTGCATGCTCCACGTGGAAAAAGATCATGGCATACTTTCTTGG
ACTTCTGAAATCACCGTGGAAGGATGTCACCTTGGCAGAActttaCGGTT
TCGACATTCCAAGTTTTCAAACAGCATCCAATCTAActatcaatcaaatc
aaaagcaACAAGAATTATTATTCCTTTATGTTTGCACGTCACCCTTACGA
CCGGTTATTTTCCGCATACCGGAACAAGTTTTTAGATCCGGTAAATCTTG
GATATTTGAAACATTACGGACCTATGATCATCTCAATGGATGTGAATCCA
CTGTCACATCGAAAACGTTCGGATGGATTATATAGAATCACATTTGAACA
GTTTGTTAAATTTGTGATAAAAGCAGGACCAGATTTTGACGATCATTGGA
GACCGCAGACCAGAATATGCCATATATGTGATCTAAAATACAAATATCTT
GGCAAATTTGAAACTATGGAGAATGATGCTAattacattttcaaaacatt
gaatgaaagtttgaaatttccaaaaatggcAGAATACAAACTGAAAACAA
CACAGATCTTAAAGAAATATTACACAGAGTTACCGAAACCTTTGATGACg
cagatttttgaattttatagaAATGATTTTGATGCTTTTGGTTATGACCC
AAATTATTTCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008534-exon-sc0000086-1491911889:96600..96930 | TCONS_00008534-exon-sc0000086-1491911889:96600..96930 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1510915933:96600..96930 | TCONS_00008534-exon-sc0000086-1510915933:96600..96930 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1575043694:96600..96930 | TCONS_00008534-exon-sc0000086-1575043694:96600..96930 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1491911889:98463..98497 | TCONS_00008534-exon-sc0000086-1491911889:98463..98497 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1510915933:98463..98497 | TCONS_00008534-exon-sc0000086-1510915933:98463..98497 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1575043694:98463..98497 | TCONS_00008534-exon-sc0000086-1575043694:98463..98497 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1491911889:98751..99005 | TCONS_00008534-exon-sc0000086-1491911889:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1510915933:98751..99005 | TCONS_00008534-exon-sc0000086-1510915933:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1575043694:98751..99005 | TCONS_00008534-exon-sc0000086-1575043694:98751..99005 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1491911889:99343..100019 | TCONS_00008534-exon-sc0000086-1491911889:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1510915933:99343..100019 | TCONS_00008534-exon-sc0000086-1510915933:99343..100019 | Clytia hemisphaerica | exon |
| TCONS_00008534-exon-sc0000086-1575043694:99343..100019 | TCONS_00008534-exon-sc0000086-1575043694:99343..100019 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:96600..100019 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005331 | Sulfotransferase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008146 | sulfotransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
BLAST of TCONS_00008534 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.105e-35 Identity = 83/282 (29.43%), Postives = 142/282 (50.35%), Query Frame = 1
Query: 397 TSETQQTRHDQLQKFCATHQNIHYTRKYDA-----NLMYSRKQKIMYCHIPKVACSTWKKIMAYFLGLLKSPWKD-VTLAELYGFDIPSFQTASNLTINQIKSN-KNYYSFMFARHPYDRLFSAYRNKFLDPVNLGYLKHYGPMIISM---DVNPLSHRKRSDGLYRITFEQFVKFVI----KAGPDFDDHWRPQTRICHICDLKYKYLGKFETMENDANYIFK--TLNESLKFPKMAEYKLKTTQILKKYYTELPKPLMTQIFEFYRNDFDAFGYD-PNYF 1191
T+ Q R DQ+ C + R+ +L+ +++YC++PKVAC+ WK++M G + + D + + + +T + +I +I K+Y F+F R P++RL SAYRNKF N+ + K YG II + + RK D + FE+FV ++I + F++HW+ +CH C + Y +GK+ET+E D+NY+ + + LKFP A+ T ++ +++ + TQ++E Y+ DF F Y P+Y
Sbjct: 74 TAVLHQMRRDQVTDTCRANSATSRKRRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTG--RGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDD----VKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYAKSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYL 349
The following BLAST results are available for this feature:
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