|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008532 ID=TCONS_00008532|Name=TCONS_00008532|organism=Clytia hemisphaerica|type=transcript|length=2206bp
cgaaaacaaaaaacaatgatTATGATCGCACGACGTCTTTCACAAACCCG
ACGTTTCTCGGTAGACACGGCATACCGACACAAAGCAAACCCAGAAAAGG
ACCGACGACGTACGTCAGTAGGTGTCAACAACAATAACAGTTTTAGTAGA
CAATTATCAGCACCAGCATCAGCACCAGAATATCCAACGCAACACCCGAA
TCCCGAAGAAATGTATCCAGACAAAATCAAAGCATGGCTCAATCGTAGCT
TGGATGCTTTATCCGTCACAGTTGAAGAGCAACACGAGAAAGACCAAATT
TTTGAGCTAGAGCCGGAAGATAAAAACCACCAATCCATAAATAAAGGAAC
TCGTTGCTCTGTCTCTTCCAGTGAGGGTTCTACCAGCAGCCATCCAAGCT
TCAGTCGCCTTCCAACATTACTACAAAATGAATTAAACCAGACAACATCA
ACACTTATTGACGTCTCATGGGACATCACAAAGAGTGATTTATTCATTGA
AACGGAAGACACTTTATTCCCAGTGGAAAAGAATTTTATTGCATACGTTT
CTGAGAAATTTCAATCGTTGATTGAAGAATCGACTTCAATACAGATTGGT
GGATCAGTCTTCTTGGTATTGAACCAATACACGACGAATGAGATAAAAAC
TGTTTTGGCGTATATCCATGCATCTGATGATACACCAATAACTGACCAAA
ACGTGGCATCTTATTTACAACTTGGTGATGAATTTAAAGTACCACGTCTC
ATTTACCAATGTGAGAAATATCTTCGTTCGTCAAAAACCTTCAATCCGGT
TATCACATCACATTTAGCAAAACAATACCAACTAGATGCTTTATTGGAAT
TTTCATACAGTGAGATCAGTAAAATAGATGATATTGAAGATTCCCAAGAA
TTTCAGTTGTTGGATTCGACAGCACAGAATCAAATATTGAAATACATTGT
TAAACGTTATAAGAAAGCTTCCAAAACGTTGTCACAGTTTGATGTACATT
TATGCAATCACCATGGTGTTGACCCTAAGAATAACCAATGTTGTTTTAGA
GCTGCAACTTATTCGACAGAAAATAATCGTATATTTTTGGTTCGCATGGA
AAAGCCGGAAGAAAGACTCTTATCAAAATTCCAGACCGCTTTAATGTGCG
ATTCAGAGAAATTGATTAGTTCTGACACAAATAAAACTACATATAATTCA
AAGTTTCATTCagtttagaaataaaaaaaacatttatataCAGTTCATAA
TGTCTATATCAACCAGTGTCAACCAGTAAGTCTTCTACTTTATACAAAAC
TCTTTACAGGAAAGGCACAAAGCTTCGGTTAGaataagggagtggtcaga
aaatttttaacTGTATTTGGAATTATTATTTGGATGTTTCTGGAAGGAAT
GCGGAATAGTAGTTTATACAAATGACTTTGGAATTGCTAAAATATCATGT
GAATTCTTTGTCACAACAAAAGgtagaagaaatagaagaagaaattttgg
caggaattcaaTTTGGTGGGTGGtctaaaaattctttttaatgGTAATTT
CATTTGGAGGTGAAGAGGAAAAGATAAATTTAGCGGGAATTTTATTTGGT
GGATGAGGgttatttttggccaaaaaaactattaaataaacaaaaaactg
ttttaagaAATGAAATAGCATAATAGTTCAACTCTAATAATTTTGGGAAT
GAATGAAATAATTTAAATATTGTTGGAATTTGATCGTAGTCgcacggtca
ggcgcgtgccactttattatttaatttaccaccctaaactcgatctaatc
cttttttttacacttttttctattgtctgtAAGTGCAAAagaaaagactg
ggacggttttagggtggtaaaacggacaaaaaatgccttGTGCAATAATT
ggcggtcgaaaaggtgtattagtcCACGAAAGTTGACAATAACTCTATTA
GGATTTTACAAATACTGTTTAGGGATTGAATATAATAAAGAACCTTGAAA
CTGATCACTATAGCCTTTACCAGGAAATTTTTGGTTATAAATACTCTCTG
TATTTTTGTGAACTTtcgaggaaaaaatatttttaaactgaaaattgTAC
ATATTGTAAATAGGTGTATAAAGTTTTAACAATggttttttttgtattta
atattttttatgtttgttttaaaaatttctgtcATAAATCTTAATTTACA
CAAAAC Run BLAST on NCBI transcript from alignment at sc0000086:64501..67995+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008532 ID=TCONS_00008532|Name=TCONS_00008532|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at sc0000086:64501..67995+ (Clytia hemisphaerica)
cgaaaacaaaaaacaatgatTATGGTTAGATTCTTCTCTAGTGAATAGCT
TAGTTACTGTAATACTGTAATAATAGGTTACTGTAAATGATATAGGACGA
TATAGAATGCttgactctctctctctctctctaattcgaattcgaatctg
atcgaatgaaattaaaaatatcatAATATCATATATAAAACATTCAGTAT
ACTGTAATAGTTTCtgtaagttcgaattatagaaagatttgaataaaaga
GGTTTTTGTATTAGCGTCCATTATAGAATGCATGCTAAATGGAAAGGAAA
TTTACTAAAATTTCTGCGACTAAATTTTCACATCTGCTATATTTTATATA
GACAATTTATTGAATGTTTTTCCTCCGTTTATTCGAGAAAGGCGCTCAAA
AAAGGAGCgttcatttgaagtaataaggTAATCTTTTTTCTCTAGATCGC
ACGACGTCTTTCACAAACCCGACGTTTCTCGGTAGACACGGCATACCGAC
ACAAAGCAAACCCAGAAAAGGACCGACGACGTACGTCAGTAGGTGTCAAC
AACAATAACAGTTTTAGTAGACAATTATCAGCACCAGCATCAGCACCAGA
ATATCCAACGCAACACCCGAATCCCGAAGAAATGTATCCAGGTATGATTT
CTCTTGTTTCAAAACTGTACATTAtcaacaaatttgattttagcagggtg
aacaaaataattgaaaattgcCATTTTGGAGTGATTTCAGCCCAAAAAAA
GCATTCTAATAAATAGAGCCTCCTGATTATGGATATACAATTATTTCTCA
CGTATAAATCGTTGTATACAAAGTTATAGGCTTTAGAAGGTTACTCATTG
gagtgaaaaaatatcaaaaaagttCCTACGAGCTACCTTCTAAAGGCAGA
CACATTCAATGAAAGAATTTACAATAAAGAAATTATCACTATATCGTGCA
ATCGGGTACACCAGGTTTATGATCCTGCTGCTTGACATTTCACCACATTT
GTTCATTTTTAGACAAAATCAAAGCATGGCTCAATCGTAGCTTGGATGCT
TTATCCGTCACAGTTGAAGAGCAACACGAGAAAGACCAAATTTTTGAGCT
AGAGCCGGAAGATAAAAACCACCAATCCATAAATAAAGGAACTCGTTGCT
CTGTCTCTTCCAGTGAGGGTTCTACCAGCAGCCATCCAAGCTTCAGTCGC
CTTCCAACATTACTACAAAATGAATTAAACCAGACAACATCAACACTTAT
TGACGTCTCATGGGACATCACAAAGAGTGATTTATTCATTGAAACGGAAG
ACACTTTATTCCCAGTGGAAAAGAATTTTATTGCATACGTTTCTGAGAAA
TTTCAATCGTTGATTGAAGAATCGACTTCAATACAGATTGGTGGATCAGT
CTTCTTGGTATTGAACCAATACACGACGAATGAGATAAAAACTGTTTTGG
CGTATATCCATGCATCTGATGATACACCAATAACTGGTAAATAATATTCA
TTTAAAATTCTATCCCCAACTGATCGCTTTCTCAAGGAAAGTTTTCCACC
CTAAGAGACTGTTCATCTGCcgtttccagaccatctaaaaagaacgatga
ataactattaaaaagcgacaaaaagaacgactaACCCTAACtttaaccct
aactatcaaaaacgacatatttcgccgtcccAAACCCCGACCTTGTTGAC
TacatattcattactttttgtacTTTACGCTATTTAACAACTAGCGGCTT
AAAGAACGATAAATAACGCATACGtagtctctatttgggtgagctggaaa
cattagatgaactaactcTTAATTTGAgatttagaaaacaaaaacaacga
aTCTGTTACGTTAACGCGTTTAAGATGGAAAAAGCAGTGGCTTCATTTCC
GATTCAAGAGTCTCCTCTCTATCCCCACTGCTTGAGTAGCTTTCCGAAAG
TAAAATAACCATCTTTGTCTCTTTTAATTTCAGACCAAAACGTGGCATCT
TATTTACAACTTGGTGATGAATTTAAAGTACCACGTCTCATTTACCAATG
TGAGAAATATCTTCGTTCGTCAAAAACCTTCAATCCGGTTATCACATCAC
ATTTAGCAAAACAATACCAACTAGATGCTTTATTGGAATTTTCATACAGT
GAGATCAGTAAAATAGATGATATTGAAGATTCCCAAGAATTTCAGTTGTT
GGATTCGACAGCACAGAATCAAATATTGAAATACATTGTTAAACGTTATA
AGAAAGCTTCCAAAACGTTGTCACAGTTTGATGTACATTTATGCAATCAC
CATGGTGTTGACCCTAAGAATAACCAATGTTGTTTTAGAGCTGCAACTTA
TTCGACAGAAAATAATCGTATATTTTTGGTTCGCATGGAAAAGCCGGAAG
AAAGACTCTTATCAAAATTCCAGACCGCTTTAATGTGCGATTCAGAGAAA
TTGATTAGTTCTGACACAAATAAAACTACATATAATTCAAAGTTTCATTC
agtttagaaataaaaaaaacatttatataCAGTTCATAATGTCTATATCA
ACCAGTGTCAACCAGTAAGTCTTCTACTTTATACAAAACTCTTTACAGGA
AAGGCACAAAGCTTCGGTTAGaataagggagtggtcagaaaatttttaac
TGTATTTGGAATTATTATTTGGATGTTTCTGGAAGGAATGCGGAATAGTA
GTTTATACAAATGACTTTGGAATTGCTAAAATATCATGTGAATTCTTTGT
CACAACAAAAGgtagaagaaatagaagaagaaattttggcaggaattcaa
TTTGGTGGGTGGtctaaaaattctttttaatgGTAATTTCATTTGGAGGT
GAAGAGGAAAAGATAAATTTAGCGGGAATTTTATTTGGTGGATGAGGgtt
atttttggccaaaaaaactattaaataaacaaaaaactgttttaagaAAT
GAAATAGCATAATAGTTCAACTCTAATAATTTTGGGAATGAATGAAATAA
TTTAAATATTGTTGGAATTTGATCGTAGTCgcacggtcaggcgcgtgcca
ctttattatttaatttaccaccctaaactcgatctaatccttttttttac
acttttttctattgtctgtAAGTGCAAAagaaaagactgggacggtttta
gggtggtaaaacggacaaaaaatgccttGTGCAATAATTggcggtcgaaa
aggtgtattagtcCACGAAAGTTGACAATAACTCTATTAGGATTTTACAA
ATACTGTTTAGGGATTGAATATAATAAAGAACCTTGAAACTGATCACTAT
AGCCTTTACCAGGAAATTTTTGGTTATAAATACTCTCTGTATTTTTGTGA
ACTTtcgaggaaaaaatatttttaaactgaaaattgTACATATTGTAAAT
AGGTGTATAAAGTTTTAACAATggttttttttgtatttaatattttttat
gtttgttttaaaaatttctgtcATAAATCTTAATTTACACAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008532-exon-sc0000086-1491911889:64501..64524 | TCONS_00008532-exon-sc0000086-1491911889:64501..64524 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1510915933:64501..64524 | TCONS_00008532-exon-sc0000086-1510915933:64501..64524 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1575043694:64501..64524 | TCONS_00008532-exon-sc0000086-1575043694:64501..64524 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1491911889:64946..65141 | TCONS_00008532-exon-sc0000086-1491911889:64946..65141 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1510915933:64946..65141 | TCONS_00008532-exon-sc0000086-1510915933:64946..65141 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1575043694:64946..65141 | TCONS_00008532-exon-sc0000086-1575043694:64946..65141 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1491911889:65513..65986 | TCONS_00008532-exon-sc0000086-1491911889:65513..65986 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1510915933:65513..65986 | TCONS_00008532-exon-sc0000086-1510915933:65513..65986 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1575043694:65513..65986 | TCONS_00008532-exon-sc0000086-1575043694:65513..65986 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1491911889:66484..67995 | TCONS_00008532-exon-sc0000086-1491911889:66484..67995 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1510915933:66484..67995 | TCONS_00008532-exon-sc0000086-1510915933:66484..67995 | Clytia hemisphaerica | exon |
| TCONS_00008532-exon-sc0000086-1575043694:66484..67995 | TCONS_00008532-exon-sc0000086-1575043694:66484..67995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:64501..67995 + |
Blast
The following BLAST results are available for this feature:
|
