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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008530 ID=TCONS_00008530|Name=TCONS_00008530|organism=Clytia hemisphaerica|type=transcript|length=2229bp ACAACAGAAGTACATACATTTTTTAACTCTCttcttttcgaaaaatgATC GCACGACGTCTTTCACAAACCCGACGTTTCTCGGTAGACACGGCATACCG ACACAAAGCAAACCCAGAAAAGGACCGACGACGTACGTCAGTAGGTGTCA ACAACAATAACAGTTTTAGTAGACAATTATCAGCACCAGCATCAGCACCA GAATATCCAACGCAACACCCGAATCCCGAAGAAATGTATCCAGACAAAAT CAAAGCATGGCTCAATCGTAGCTTGGATGCTTTATCCGTCACAGTTGAAG AGCAACACGAGAAAGACCAAATTTTTGAGCTAGAGCCGGAAGATAAAAAC CACCAATCCATAAATAAAGGAACTCGTTGCTCTGTCTCTTCCAGTGAGGG TTCTACCAGCAGCCATCCAAGCTTCAGTCGCCTTCCAACATTACTACAAA ATGAATTAAACCAGACAACATCAACACTTATTGACGTCTCATGGGACATC ACAAAGAGTGATTTATTCATTGAAACGGAAGACACTTTATTCCCAGTGGA AAAGAATTTTATTGCATACGTTTCTGAGAAATTTCAATCGTTGATTGAAG AATCGACTTCAATACAGATTGGTGGATCAGTCTTCTTGGTATTGAACCAA TACACGACGAATGAGATAAAAACTGTTTTGGCGTATATCCATGCATCTGA TGATACACCAATAACTGACCAAAACGTGGCATCTTATTTACAACTTGGTG ATGAATTTAAAGTACCACGTCTCATTTACCAATGTGAGAAATATCTTCGT TCGTCAAAAACCTTCAATCCGGTTATCACATCACATTTAGCAAAACAATA CCAACTAGATGCTTTATTGGAATTTTCATACAGTGAGATCAGTAAAATAG ATGATATTGAAGATTCCCAAGAATTTCAGTTGTTGGATTCGACAGCACAG AATCAAATATTGAAATACATTGTTAAACGTTATAAGAAAGCTTCCAAAAC GTTGTCACAGTTTGATGTACATTTATGCAATCACCATGGTGTTGACCCTA AGAATAACCAATGTTGTTTTAGAGCTGCAACTTATTCGACAGAAAATAAT CGTATATTTTTGGTTCGCATGGAAAAGCCGGAAGAAAGACTCTTATCAAA ATTCCAGACCGCTTTAATGTGCGATTCAGAGAAATTGATTAGTTCTGACA CAAATAAAACTACATATAATTCAAAGTTTCATTCagtttagaaataaaaa aaacatttatataCAGTTCATAATGTCTATATCAACCAGTGTCAACCAGT AAGTCTTCTACTTTATACAAAACTCTTTACAGGAAAGGCACAAAGCTTCG GTTAGaataagggagtggtcagaaaatttttaacTGTATTTGGAATTATT ATTTGGATGTTTCTGGAAGGAATGCGGAATAGTAGTTTATACAAATGACT TTGGAATTGCTAAAATATCATGTGAATTCTTTGTCACAACAAAAGgtaga agaaatagaagaagaaattttggcaggaattcaaTTTGGTGGGTGGtcta aaaattctttttaatgGTAATTTCATTTGGAGGTGAAGAGGAAAAGATAA ATTTAGCGGGAATTTTATTTGGTGGATGAGGgttatttttggccaaaaaa actattaaataaacaaaaaactgttttaagaAATGAAATAGCATAATAGT TCAACTCTAATAATTTTGGGAATGAATGAAATAATTTAAATATTGTTGGA ATTTGATCGTAGTCgcacggtcaggcgcgtgccactttattatttaattt accaccctaaactcgatctaatccttttttttacacttttttctattgtc tgtAAGTGCAAAagaaaagactgggacggttttagggtggtaaaacggac aaaaaatgccttGTGCAATAATTggcggtcgaaaaggtgtattagtcCAC GAAAGTTGACAATAACTCTATTAGGATTTTACAAATACTGTTTAGGGATT GAATATAATAAAGAACCTTGAAACTGATCACTATAGCCTTTACCAGGAAA TTTTTGGTTATAAATACTCTCTGTATTTTTGTGAACTTtcgaggaaaaaa tatttttaaactgaaaattgTACATATTGTAAATAGGTGTATAAAGTTTT AACAATggttttttttgtatttaatattttttatgtttgttttaaaaatt tctgtcATAAATCTTAATTTACACAAAAC Run BLAST on NCBI transcript from alignment at sc0000086:59270..67995+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008530 ID=TCONS_00008530|Name=TCONS_00008530|organism=Clytia hemisphaerica|type=transcript|length=8726bp|location=Sequence derived from alignment at sc0000086:59270..67995+ (Clytia hemisphaerica) ACAACAGAAGTACATACATTTTTTAACTCTCttcttttcgaaaaatggta
agtTTTGCATGCACTGTCGGAAATTTTGtggtaggagagcagatttttat
gacatagTAATTATTTATTCATAAAGTTAAAACAAAATATTCCGAGATCC
CTGAGTACGCTACGGTGCGATTTTGAGACCAAGTGAGAGCACCTACTTTG
GTAGAAAATATTTCCCTTGGTAAGAAACACTAATTTTCGTTCCGAAAAGT
TACGTAAAATGTAAATACAGATTTGATATATTTAAATAttctaaaaactg
ttttgtatgattttttagTCCGTGGAAAAGACGTACAACCATTTGCATTT
TCATCTCTagttatttcaacgtttatctaatgttcataacgtccatataa
cttgagatgaacgttgaaacaacgttttgtgccagctgggacccCTTcat
cacagacccactggaaccctTTCCCATTGAAACAaattggaaaattatac
tccgaTTTTTGTTTCCTCTGAAAATAACcgaataaaccaatcctcgctgc
aaaatattttgctatatttcccatccccactgaaatttCTGTCTTAAAAA
CAATGGATTTCAAATCcctagccataaaaaatatgggaatataaATCCCC
TTCGCGTTTCAGTCTGCTAGTTTTACCCCCGCTGACTGAAAAACCCCTAC
CGAGTCTGTGAAAAGTGGATTTCTAGTAAACTAtacaaatatctttccaa
cagtgTTTTTTATTAATATGTCATAACACGGGAGTTATTAAAGTTTGTCT
TTCTCTCATCAGAGGGTGGAAAGGAAAGCTAGCAGACAGAAATGACTACA
GTACTTTCTAGCTTTttcatcgagaaaaaaaattcagcacgattatattt
tcaaaaagtggatGCGTTTGTATATAAACTGTtgataatTCTAATTGGAT
CAAAGCGAATACTTTAACAACCATATATCCTCTCGAAAATTGGCCACTTG
GAAAGACTATTACTACGCTGTTGCCCTTAGATTGCTAATTTGCTTCATAA
TTTATCCCCTTTCCCTACACCAAATAGCTAACAGAAAAAGAGCAAGGCTA
GTTTGAAGTCCTTTTATTGCAGTGGCTATCTTAAGGCTCTTAAGGACATA
TCTACCATTTCCAATTGGATCAGTTATTTTATTTGCAACATTTTACAAAG
GGgtcattgttttattttgcaaTGTAGATAATAGAGGAAGCGGGGACAAA
GATTGCCTTGAAATCAATATATTAAATTCCTTTGCGAGGGCATATCCAAG
TTATATGTAGCACAGAGGCGTGAGAATGCATTTGCGAGCCTCCTTGATAT
GTTCTTAATGTCTCAAAAATGATCATGAGAGATCGTCAGAAATTCATTAG
ATGTATGAGAAAGCTAAATTACTTCTCTATTAGTCAGCTATTTTTACATT
TGATGATGTTCAAAAGCAGCGATATTATTTCttatattcaaaatttcaac
agTAATGGTCATCTTGAGAGGCCCAAAGTTCAGGATTAAGGTTTTAAGAT
CAATGATTTTTTGCTGAATGAGCATATTTTATATTCTTTCTGTTGAGCCA
GAGCATAACTgacaaaaaatggacaaaaatactcaaaaatggcaaaaata
agaacatgttaagaacatttttagacttagaactcaaaaagttaaaactt
caaaattttggatgttcttataaaaaaacaaacgtgtaaACCTTTTCAGT
TATTTTGGCCGaaaactgcttaaaaatctTTCTGCGTTGCTGTGATTAAT
AATTTTGTAGCTTTTTGAGACGTTCTAAGgatttttgcaatttaatggAT
CTGGAATCAATACTTATCAGGCTTTAAATGCCCCTTAGACACACCACTTA
TAGTCATTGAGTACATTTTAATAATGTCAGACCGGGTTCATAAAGGAAAA
GCTTAACTCACGGTGATTAAgcataaaaagtgaaaaaagtgacATTATAT
GCCATTAATTTCTACATTTTAATACTATAAATAACAATTTTAATATTACA
GCAAATTTCATAAATTAACGACACCATTACGGGAATTATATTGACAGCTT
TGAATTGATGCATGTGAAAACTGGAATCGTCCCATTCAAGAATTTTCCGG
TCTTTTGAATCTGTAAAATTGTCCTCACagtttgataaaatctttatatC
ACTTTTGACGGTCACGACAGGCGCATGCAcccgctttttataagaataaa
ctatataagaacaatagTGCTTTATAATGCTACTGGTAAGAACAAGTCAA
AAGAACACACTTTCTTAGAACATTGTAAAAAAATACTCACACAATgatta
aaataagaacatgttaaattatttttaactttAATACAGTATAAAAACAT
GTACGACTCGATGCTTGCGAAATCATAGACAGTGATAGTTCCATTCAGGA
ATATTCCAGTCCTTAAAATTATCACTTTATGATCACTAAACTCCCTTTCT
TGTTCACTTTTGAAAGTCATGACGGACGTATATACATAGTCTTGacagga
aaattattttcaacttttaaagaGGTCCAACTAACAGGAACTAGAAACCC
TCGATCAATAATTGACTTAATTAGAAAAAACTGTCACTGTCATTTTTAgt
acaaaataatcaaaattaattttgtgtGTTTTTCACTTATTCCGACCAGA
AAGGGGGCAAAACTGTAAGATTTTAAACTGCTAATAACTCAGTCATACAG
AAAAAGTATCAATTATACAGACTATGAAGTAATATCTCTCTTGATCCTCA
TGATGAATTTTCGTAAGCGTTGAGTAATATTGATTGACTATGTTTtacag
gtttttttataagaccatccaaaatttttgaagccttcagatgttcttaa
ctttttgggtttcaagctTAAATATGTTCTttgcttgttcttattttcag
cattttaaaACAGGTATGTTCTAAAGCCCACAAAGCCTCAAGATGTtgtt
aacttgtttttaaagggacatacaaatagtaaaatgtaaacattgcgcga
accacgttgTCATTGAAGAGAACAATTAAagtcacgtgtccaaaacaaac
ttgtaaaacaattgaaacaatcaaaatcagccataattgttttgatttta
tattttgacatgtgacatttgttttgattttgtatcctgctgcatacggt
ttgtttacaagttATGTCAGTattttaatgtccctttaagtttTTGGTCA
CCAAGacctaatgttcttatatagtttgttcttacaaaaaaaaagtttgt
tgattGACGAAACAAAAGTTTACAATTCCAAACATTGTTTGATTTACAAA
CTGAATGCTTTTCTAAGCAGAAATTTGTAAGAAAAATAAGCTGCATTTTC
ATGCATTACAGTATGGGACTAAACTCTACTATATCACAAGtgaaaaaaag
gataaaaaaatgaTGTTTCGAGCAGTGGATCACTAAGTCATGTATAGCAA
ATTCACAATTATTTATATTCCCTTGGACGAATTGGTGAAAATGTCATCCC
AAATTGAacgttaaatttttaaattatacttattttgatctttgaaaatt
attcttataCAAAGAGCTTAATACTGTATCACTTCGCAGTAACCAAGAAA
CAGGAATgagtatgaaaatatttaattgCTTCATAATTACACACATGATg
tcattaaaatattttgtgGTGGAAAATGGTAATTCACATTTTGCACTTAA
TAAAAACAATGTATTCCTTCTGTTTAAAGTTAGTTTAAGGAATGTTTTGT
AAGCAACTAGGTGGTTGAGAAAAAAGGTGAGATCCCTGTATTTTTTTCAC
AGTTTTACCGTGACCGAAAAAAAACTCGTAGCCTAGCCAGATGATAcagc
ttttcataaattacgtctcGAGTTacacttacctcgttttcaagaTATTA
CCAGGGGAGGTTATAAgagtttatttttctaaaaaagcgatgcatggTGG
GATTGtatcgagtgtattacaatagaaatctcttaggaattctttgaggg
aattctattgtaatacactcaaaacaatcccacaattcatcgctttttta
taaaaataaaaaactccgataaggtctattgccgcgtgggtatttttttg
tccgttttaccaaccttaaaccgtcccagtcttttttttttacctaaaga
caatagaaaaagtgtaaaaaaaggattggatcgagttcaGGGTGATAAAT
TAAATGATAGTAGCAGGCTACTATTGTCGAAAATGTGTATTACCTTATCA
ATTGTTTCAAAAGGGGGTAGTACTCAAAATAATTAATTATAGGTCTTATC
TATGTCTTTGACTCTTTTCGCGGTTATACTTTTGGAAAGAGGTTACACCA
CAAATTCAAAATCTTACATCTCTGTCTCACTGAGGTGAAGTGTATTGGGA
ATGAAATTTTCCAAACAAAGTTTTCTGGCTAGAGATTGCAAAAAACAATC
TTTTAATAAACTCGTTTTCATACGAGCCAGTACATTCGTCATAGAGTTTT
AGCACTTTAGATCGTTCTtatcattttgtcatttttgaggGTGatattga
ggtattttaggtgTAATTTTGATTACTTGGACCCTTTAATTGCTCGAGAT
TAAGCAATCCCCGTCTTCGCATTGTTCtcaaattgttctcattttttggt
AATTCtaagcctcattgttcttaatAAAAGTTACCTTTTTGAAACAGGAG
TGTAACCCTTTGTCTAAGGGAATGTACATAGTTCTTcggtcaatagacct
ttttaataaattacgtcacgaacatcgcttgcctcgttttgaaattattg
ccaaggtgattaactcccagtggattttattaaaactactttctattcat
aaaaataaTCATTTGATATCTCAATATActatggaaattgtttgaatacg
aggcaagtgatgtccgcgacgtaatttatgaaaagatctatcgaccataa
caaacaaacaaatcttTTTATTTATGTCTTTGTTGACATTTTGACGGAAA
TTCCAACCAAAAGAAATCAATACAAAATATACCAGAAATGACATCaggaa
gaaaatctttttagacgtaaaaaaagacaaaacaacactgaaaagaagaa
aacaatatTTGTTAAAATCTGACTATCAACATCATAATAGAATATTGATT
AATAGATAATAGATAATGATGCATTGTTGcacgaaaacaaaaaacaatga
tTATGGTTAGATTCTTCTCTAGTGAATAGCTTAGTTACTGTAATACTGTA
ATAATAGGTTACTGTAAATGATATAGGACGATATAGAATGCttgactctc
tctctctctctctaattcgaattcgaatctgatcgaatgaaattaaaaat
atcatAATATCATATATAAAACATTCAGTATACTGTAATAGTTTCtgtaa
gttcgaattatagaaagatttgaataaaagaGGTTTTTGTATTAGCGTCC
ATTATAGAATGCATGCTAAATGGAAAGGAAATTTACTAAAATTTCTGCGA
CTAAATTTTCACATCTGCTATATTTTATATAGACAATTTATTGAATGTTT
TTCCTCCGTTTATTCGAGAAAGGCGCTCAAAAAAGGAGCgttcatttgaa
gtaataaggTAATCTTTTTTCTCTAGATCGCACGACGTCTTTCACAAACC
CGACGTTTCTCGGTAGACACGGCATACCGACACAAAGCAAACCCAGAAAA
GGACCGACGACGTACGTCAGTAGGTGTCAACAACAATAACAGTTTTAGTA
GACAATTATCAGCACCAGCATCAGCACCAGAATATCCAACGCAACACCCG
AATCCCGAAGAAATGTATCCAGGTATGATTTCTCTTGTTTCAAAACTGTA
CATTAtcaacaaatttgattttagcagggtgaacaaaataattgaaaatt
gcCATTTTGGAGTGATTTCAGCCCAAAAAAAGCATTCTAATAAATAGAGC
CTCCTGATTATGGATATACAATTATTTCTCACGTATAAATCGTTGTATAC
AAAGTTATAGGCTTTAGAAGGTTACTCATTGgagtgaaaaaatatcaaaa
aagttCCTACGAGCTACCTTCTAAAGGCAGACACATTCAATGAAAGAATT
TACAATAAAGAAATTATCACTATATCGTGCAATCGGGTACACCAGGTTTA
TGATCCTGCTGCTTGACATTTCACCACATTTGTTCATTTTTAGACAAAAT
CAAAGCATGGCTCAATCGTAGCTTGGATGCTTTATCCGTCACAGTTGAAG
AGCAACACGAGAAAGACCAAATTTTTGAGCTAGAGCCGGAAGATAAAAAC
CACCAATCCATAAATAAAGGAACTCGTTGCTCTGTCTCTTCCAGTGAGGG
TTCTACCAGCAGCCATCCAAGCTTCAGTCGCCTTCCAACATTACTACAAA
ATGAATTAAACCAGACAACATCAACACTTATTGACGTCTCATGGGACATC
ACAAAGAGTGATTTATTCATTGAAACGGAAGACACTTTATTCCCAGTGGA
AAAGAATTTTATTGCATACGTTTCTGAGAAATTTCAATCGTTGATTGAAG
AATCGACTTCAATACAGATTGGTGGATCAGTCTTCTTGGTATTGAACCAA
TACACGACGAATGAGATAAAAACTGTTTTGGCGTATATCCATGCATCTGA
TGATACACCAATAACTGGTAAATAATATTCATTTAAAATTCTATCCCCAA
CTGATCGCTTTCTCAAGGAAAGTTTTCCACCCTAAGAGACTGTTCATCTG
Ccgtttccagaccatctaaaaagaacgatgaataactattaaaaagcgac
aaaaagaacgactaACCCTAACtttaaccctaactatcaaaaacgacata
tttcgccgtcccAAACCCCGACCTTGTTGACTacatattcattacttttt
gtacTTTACGCTATTTAACAACTAGCGGCTTAAAGAACGATAAATAACGC
ATACGtagtctctatttgggtgagctggaaacattagatgaactaactcT
TAATTTGAgatttagaaaacaaaaacaacgaaTCTGTTACGTTAACGCGT
TTAAGATGGAAAAAGCAGTGGCTTCATTTCCGATTCAAGAGTCTCCTCTC
TATCCCCACTGCTTGAGTAGCTTTCCGAAAGTAAAATAACCATCTTTGTC
TCTTTTAATTTCAGACCAAAACGTGGCATCTTATTTACAACTTGGTGATG
AATTTAAAGTACCACGTCTCATTTACCAATGTGAGAAATATCTTCGTTCG
TCAAAAACCTTCAATCCGGTTATCACATCACATTTAGCAAAACAATACCA
ACTAGATGCTTTATTGGAATTTTCATACAGTGAGATCAGTAAAATAGATG
ATATTGAAGATTCCCAAGAATTTCAGTTGTTGGATTCGACAGCACAGAAT
CAAATATTGAAATACATTGTTAAACGTTATAAGAAAGCTTCCAAAACGTT
GTCACAGTTTGATGTACATTTATGCAATCACCATGGTGTTGACCCTAAGA
ATAACCAATGTTGTTTTAGAGCTGCAACTTATTCGACAGAAAATAATCGT
ATATTTTTGGTTCGCATGGAAAAGCCGGAAGAAAGACTCTTATCAAAATT
CCAGACCGCTTTAATGTGCGATTCAGAGAAATTGATTAGTTCTGACACAA
ATAAAACTACATATAATTCAAAGTTTCATTCagtttagaaataaaaaaaa
catttatataCAGTTCATAATGTCTATATCAACCAGTGTCAACCAGTAAG
TCTTCTACTTTATACAAAACTCTTTACAGGAAAGGCACAAAGCTTCGGTT
AGaataagggagtggtcagaaaatttttaacTGTATTTGGAATTATTATT
TGGATGTTTCTGGAAGGAATGCGGAATAGTAGTTTATACAAATGACTTTG
GAATTGCTAAAATATCATGTGAATTCTTTGTCACAACAAAAGgtagaaga
aatagaagaagaaattttggcaggaattcaaTTTGGTGGGTGGtctaaaa
attctttttaatgGTAATTTCATTTGGAGGTGAAGAGGAAAAGATAAATT
TAGCGGGAATTTTATTTGGTGGATGAGGgttatttttggccaaaaaaact
attaaataaacaaaaaactgttttaagaAATGAAATAGCATAATAGTTCA
ACTCTAATAATTTTGGGAATGAATGAAATAATTTAAATATTGTTGGAATT
TGATCGTAGTCgcacggtcaggcgcgtgccactttattatttaatttacc
accctaaactcgatctaatccttttttttacacttttttctattgtctgt
AAGTGCAAAagaaaagactgggacggttttagggtggtaaaacggacaaa
aaatgccttGTGCAATAATTggcggtcgaaaaggtgtattagtcCACGAA
AGTTGACAATAACTCTATTAGGATTTTACAAATACTGTTTAGGGATTGAA
TATAATAAAGAACCTTGAAACTGATCACTATAGCCTTTACCAGGAAATTT
TTGGTTATAAATACTCTCTGTATTTTTGTGAACTTtcgaggaaaaaatat
ttttaaactgaaaattgTACATATTGTAAATAGGTGTATAAAGTTTTAAC
AATggttttttttgtatttaatattttttatgtttgttttaaaaatttct
gtcATAAATCTTAATTTACACAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008530-exon-sc0000086-1491911889:59270..59316 | TCONS_00008530-exon-sc0000086-1491911889:59270..59316 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1510915933:59270..59316 | TCONS_00008530-exon-sc0000086-1510915933:59270..59316 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1575043694:59270..59316 | TCONS_00008530-exon-sc0000086-1575043694:59270..59316 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1491911889:64946..65141 | TCONS_00008530-exon-sc0000086-1491911889:64946..65141 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1510915933:64946..65141 | TCONS_00008530-exon-sc0000086-1510915933:64946..65141 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1575043694:64946..65141 | TCONS_00008530-exon-sc0000086-1575043694:64946..65141 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1491911889:65513..65986 | TCONS_00008530-exon-sc0000086-1491911889:65513..65986 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1510915933:65513..65986 | TCONS_00008530-exon-sc0000086-1510915933:65513..65986 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1575043694:65513..65986 | TCONS_00008530-exon-sc0000086-1575043694:65513..65986 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1491911889:66484..67995 | TCONS_00008530-exon-sc0000086-1491911889:66484..67995 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1510915933:66484..67995 | TCONS_00008530-exon-sc0000086-1510915933:66484..67995 | Clytia hemisphaerica | exon |
TCONS_00008530-exon-sc0000086-1575043694:66484..67995 | TCONS_00008530-exon-sc0000086-1575043694:66484..67995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:59270..67995 + |
Blast
The following BLAST results are available for this feature:
|