TCONS_00008524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008524
Unique NameTCONS_00008524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008524 ID=TCONS_00008524|Name=TCONS_00008524|organism=Clytia hemisphaerica|type=transcript|length=938bp
GTNAGATCGTTAAAATATTGCTGAATCAGCAATTATAAAACAACAGCTCG
GTAAAGACGAAGATAAAACATAAAACCGAGTACATTGAATCTGTGACAAA
AGACGTTGCGTCAATAATTACTGTTGCGCAATCGATTGCAGATatcataa
caaaataaaatatcaaagagAGAACAACGTGAATGAACTCAAACTCGTGT
AAAGTTTGGATTGAATGAGacgctttttatttttgtttcaccTTTTACAG
GAATTCGAAGACGTTGCAGTgcaaatacatttttttttcttggaagGAAA
AGAAGACATTCTAATGTGTGTAAcgtgatgttgtttttttcttctctagC
ACGCgtgtaagaaaaaaaaatcaaaatgaatggTACAACAAGAAGATACG
AGCCATTTCACAGAAGTGAGTGCCAAAGTTACAAAAGAAGCATGAGAAAT
ACTCAACAAAAACATACAATGTCTATGAAACGACCCAATTCGAAATCATT
GCGTGAAAAGCAGAagagaaaatctttttcaccGTCAAAGAACTCATCAA
AAGTTGGAGATTATATTTTAACTGATGTGAACATTTCAAGTTGTCTTTGT
AAAGCTGTTCATGAGAATACTGGCAGAGAATACATGTGCCAATACATAGA
AATGTCAAAATACAGAGAGACCCTTCTTCCATACACGCTGGTATCgccaa
atgaaaatataaacaatatCGTCGAAGTTTTATTCGGGAAAAGTTACGTg
tactttatttttgaaagaagcTTTGGAGACCTTCACTCGTATATTCGTTC
AAAGAAAAAGCTGAGAGAAGGGGAAGCTTGTAAATTATTTCAGCAGATTG
TTCAAGTTGTGAGGCATTGTCATTCAAAAGGAGTTGTCATCAGGGACCTG
AAGCTCAGAAAGTTTGTCTTTGCAGACCCAAACAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00008524-protein

>TCONS_00008524-protein ID=TCONS_00008524-protein|Name=TCONS_00008524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MNGTTRRYEPFHRSECQSYKRSMRNTQQKHTMSMKRPNSKSLREKQKRKS
FSPSKNSSKVGDYILTDVNISSCLCKAVHENTGREYMCQYIEMSKYRETL
LPYTLVSPNENINNIVEVLFGKSYVYFIFERSFGDLHSYIRSKKKLREGE
ACKLFQQIVQVVRHCHSKGVVIRDLKLRKFVFADPNR
Run BLAST on NCBI

transcript from alignment at sc0000085:691050..691987

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008524 ID=TCONS_00008524|Name=TCONS_00008524|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at sc0000085:691050..691987 (Clytia hemisphaerica)
TACCTGTTTGGGTCTGCAAAGACAAACTTTCTGAGCTTCAGGTCCCTGAT
GACAACTCCTTTTGAATGACAATGCCTCACAACTTGAACAATCTGCTGAA
ATAATTTACAAGCTTCCCCTTCTCTCAGCTTTTTCTTTGAACGAATATAC
GAGTGAAGGTCTCCAAAgcttctttcaaaaataaagtacACGTAACTTTT
CCCGAATAAAACTTCGACGatattgtttatattttcatttggcGATACCA
GCGTGTATGGAAGAAGGGTCTCTCTGTATTTTGACATTTCTATGTATTGG
CACATGTATTCTCTGCCAGTATTCTCATGAACAGCTTTACAAAGACAACT
TGAAATGTTCACATCAGTTAAAATATAATCTCCAACTTTTGATGAGTTCT
TTGACggtgaaaaagattttctctTCTGCTTTTCACGCAATGATTTCGAA
TTGGGTCGTTTCATAGACATTGTATGTTTTTGTTGAGTATTTCTCATGCT
TCTTTTGTAACTTTGGCACTCACTTCTGTGAAATGGCTCGTATCTTCTTG
TTGTAccattcattttgatttttttttcttacacGCGTGctagagaagaa
aaaaacaacatcacgTTACACACATTAGAATGTCTTCTTTTCcttccaag
aaaaaaaaatgtatttgcACTGCAACGTCTTCGAATTCCTGTAAAAggtg
aaacaaaaataaaaagcgtCTCATTCAATCCAAACTTTACACGAGTTTGA
GTTCATTCACGTTGTTCTctctttgatattttattttgttatgatATCTG
CAATCGATTGCGCAACAGTAATTATTGACGCAACGTCTTTTGTCACAGAT
TCAATGTACTCGGTTTTATGTTTTATCTTCGTCTTTACCGAGCTGTTGTT
TTATAATTGCTGATTCAGCAATATTTTAACGATCTNAC

Coding sequence (CDS) from alignment at sc0000085:691050..691987

>TCONS_00008524 ID=TCONS_00008524|Name=TCONS_00008524|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000085:691050..691987 (Clytia hemisphaerica)
CCTGTTTGGGTCTGCAAAGACAAACTTTCTGAGCTTCAGGTCCCTGATGA
CAACTCCTTTTGAATGACAATGCCTCACAACTTGAACAATCTGCTGAAAT
AATTTACAAGCTTCCCCTTCTCTCAGCTTTTTCTTTGAACGAATATACGA
GTGAAGGTCTCCAAAgcttctttcaaaaataaagtacACGTAACTTTTCC
CGAATAAAACTTCGACGatattgtttatattttcatttggcGATACCAGC
GTGTATGGAAGAAGGGTCTCTCTGTATTTTGACATTTCTATGTATTGGCA
CATGTATTCTCTGCCAGTATTCTCATGAACAGCTTTACAAAGACAACTTG
AAATGTTCACATCAGTTAAAATATAATCTCCAACTTTTGATGAGTTCTTT
GACggtgaaaaagattttctctTCTGCTTTTCACGCAATGATTTCGAATT
GGGTCGTTTCATAGACATTGTATGTTTTTGTTGAGTATTTCTCATGCTTC
TTTTGTAACTTTGGCACTCACTTCTGTGAAATGGCTCGTATCTTCTTGTT
GTAccattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004773XLOC_004773Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008524-proteinTCONS_00008524-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008524-exon-sc0000085-1491911889:691050..691987TCONS_00008524-exon-sc0000085-1491911889:691050..691987Clytia hemisphaericaexon
TCONS_00008524-exon-sc0000085-1510915933:691050..691987TCONS_00008524-exon-sc0000085-1510915933:691050..691987Clytia hemisphaericaexon
TCONS_00008524-exon-sc0000085-1575043694:691050..691987TCONS_00008524-exon-sc0000085-1575043694:691050..691987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:691050..691987 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.28264	3.8915	5.56535	6.68474	2.6908	2.07444	3.25355	4.74462	2.33758	1.47313	1.775	2.2688	4.27237	2.31929	3.09505	5.39737	4.31097	6.06622	3.77654	3.13984	5.59935	4.61315	6.13798	5.98616	111.765	62.4411	2.46905	2.0653	1.62047	1.76107
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00008524 vs. Swiss-Prot (Human)
Match: TRIB2 (Tribbles homolog 2 OS=Homo sapiens GN=TRIB2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.974e-37
Identity = 73/182 (40.11%), Postives = 106/182 (58.24%), Query Frame = 1 
Query:  430 YKRSMRNTQQKHTMSMKRPNSKSLREKQKRKSFSPSKNS-------------SKVGDYILTDVNISSCLCKAVHENTGREYMCQYIEMSKYRETLLPYTLVSPNENINNIVEVLFGKSYVYFIFERSFGDLHSYIRSKKKLREGEACKLFQQIVQVVRHCHSKGVVIRDLKLRKFVFADPNR 936
            Y RS   TQ    +S       S+R  +  +SFSP+  S             S +G Y+L +      + +AVH ++G E +C+  ++S Y+E+L P   +S + NIN I E++ G++  Y  FERS+GD+HS++R+ KKLRE EA +LF QI   V HCH  G+V+RDLKLRKF+F D  R
Sbjct:   14 YGRSRNKTQDFEELS-------SIRSAEPSQSFSPNLGSPSPPETPNLSHCVSCIGKYLLLEPLEGDHVFRAVHLHSGEELVCKVFDISCYQESLAPCFCLSAHSNINQITEIILGETKAYVFFERSYGDMHSFVRTCKKLREEEAARLFYQIASAVAHCHDGGLVLRDLKLRKFIFKDEER 188
The following BLAST results are available for this feature:
BLAST of TCONS_00008524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRIB27.974e-3740.11Tribbles homolog 2 OS=Homo sapiens GN=TRIB2 PE=1 S... [more]
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