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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008508 ID=TCONS_00008508|Name=TCONS_00008508|organism=Clytia hemisphaerica|type=transcript|length=1327bp
CGAGTAGtacatgaaataaaaatatacacAAATAGCACCATTGATACAAT
TACCCAACCTTTTGATTTCATCTGAACTGAAAAATTGACATCAAGAGTGA
TTTCACGGTCCTCTTCTGGATCATCATCAATAATGTTTGCAACAAAACCG
CGTCCTCCTTCAACAATCTCTTGTTGACAAAAATTCCCATCCTTTTCACC
ACAAAATTCTTCACAACTTGGACATATGAGTGACCCGTTCACTTTCCAAT
CGCTCATAAAACCTTCCActtcaattttttgatatttgtgTTGACATAGA
TATTGTTTACTGCCAACGTGGAGAACTAAACCATCCGATGTACATTGATA
TTTATAACATCCACTACCCCAATCCAACATTGTTCTCGTAAATAAATCTT
TCTTGGCGATCCAATGTCGACCATGCTCGACGCATTTAGATTGCCGACCG
TATATCTCTAATGCATAGTTTTTATTACTTTCTGGTGAATTTTCTTTCAC
TGTACACGTTGTACCGCGTTTACGCCCGCTTTCTTCCGTcaatgtaaatt
tttgataaaacggacaaaaatctGCCAATTCTACCGCACCACCATACGTG
GCGATGTCTTTGACTGAGATGTGACCCAACTTATCGAAGTATTGGAAATC
TCTTGGTAATGTAGATGAATATTTCACCAGATTACATAAAGCGAGTGAAA
GTTTACTATGCGTGCATCTCATGTGTAAAGGTGATTGTTTGAGAGTTGCA
CAGAAAGGTGCCGTGTGTAATTTCTGCTCAATACTGTTCGCTATCCACGC
TCTACAATTGTTTTTAACAAACAAACAGCCTAAGTTCTTACCCCAATCTA
AATCTTCAGCCATGGCGTAATTAGCTTTATACCATTCTGTATCTTCCATT
AAAGCTAATGTGATCCTTGAGAAAACTGGGTGTTGTGTATAAGTTCCTGT
CATAGCCTCGTTCTCAAACAAGCGCTTCTCCCAATGCGTTGACGCCGTAC
CTTCACCGCCCTGATTTTCCAGTTCCGCCCCTTCTAAATCATCACACGCG
AAATGTTTCCGAACCTCTCTCTGTACGGTCGGTGTAACAATTAGCTGTAC
GGGATGTTTAACAGTTCCACCGGAAACTGCCCAATCTGTACGGATGATTG
TTTTTAACACCCGGTCACTCCATTGATATAAATTGGTCTCTTGGTTGTAT
TCCGGTAATCCGTTTTTCAATCGGTTACTCAATGGTTTCCCGTTTTTGTC
TCGATAAAAAGCGAATAAACCAACGCTAAATCCAAGAGCATGATAGATTT
CGTGCTTAACTGTTGATAGTAAACTTT Run BLAST on NCBI protein sequence of TCONS_00008508-protein >TCONS_00008508-protein ID=TCONS_00008508-protein|Name=TCONS_00008508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
SLLSTVKHEIYHALGFSVGLFAFYRDKNGKPLSNRLKNGLPEYNQETNLY
QWSDRVLKTIIRTDWAVSGGTVKHPVQLIVTPTVQREVRKHFACDDLEGA
ELENQGGEGTASTHWEKRLFENEAMTGTYTQHPVFSRITLALMEDTEWYK
ANYAMAEDLDWGKNLGCLFVKNNCRAWIANSIEQKLHTAPFCATLKQSPL
HMRCTHSKLSLALCNLVKYSSTLPRDFQYFDKLGHISVKDIATYGGAVEL
ADFCPFYQKFTLTEESGRKRGTTCTVKENSPESNKNYALEIYGRQSKCVE
HGRHWIAKKDLFTRTMLDWGSGCYKYQCTSDGLVLHVGSKQYLCQHKYQK
IEVEGFMSDWKVNGSLICPSCEEFCGEKDGNFCQQEIVEGGRGFVANIID
DDPEEDREITLDVNFSVQMKSKGWVIVSMVLFVYIFISCTT Run BLAST on NCBI transcript from alignment at sc0000085:347896..349222 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008508 ID=TCONS_00008508|Name=TCONS_00008508|organism=Clytia hemisphaerica|type=transcript|length=1327bp|location=Sequence derived from alignment at sc0000085:347896..349222 (Clytia hemisphaerica)
AAAGTTTACTATCAACAGTTAAGCACGAAATCTATCATGCTCTTGGATTT
AGCGTTGGTTTATTCGCTTTTTATCGAGACAAAAACGGGAAACCATTGAG
TAACCGATTGAAAAACGGATTACCGGAATACAACCAAGAGACCAATTTAT
ATCAATGGAGTGACCGGGTGTTAAAAACAATCATCCGTACAGATTGGGCA
GTTTCCGGTGGAACTGTTAAACATCCCGTACAGCTAATTGTTACACCGAC
CGTACAGAGAGAGGTTCGGAAACATTTCGCGTGTGATGATTTAGAAGGGG
CGGAACTGGAAAATCAGGGCGGTGAAGGTACGGCGTCAACGCATTGGGAG
AAGCGCTTGTTTGAGAACGAGGCTATGACAGGAACTTATACACAACACCC
AGTTTTCTCAAGGATCACATTAGCTTTAATGGAAGATACAGAATGGTATA
AAGCTAATTACGCCATGGCTGAAGATTTAGATTGGGGTAAGAACTTAGGC
TGTTTGTTTGTTAAAAACAATTGTAGAGCGTGGATAGCGAACAGTATTGA
GCAGAAATTACACACGGCACCTTTCTGTGCAACTCTCAAACAATCACCTT
TACACATGAGATGCACGCATAGTAAACTTTCACTCGCTTTATGTAATCTG
GTGAAATATTCATCTACATTACCAAGAGATTTCCAATACTTCGATAAGTT
GGGTCACATCTCAGTCAAAGACATCGCCACGTATGGTGGTGCGGTAGAAT
TGGCagatttttgtccgttttatcaaaaatttacattgACGGAAGAAAGC
GGGCGTAAACGCGGTACAACGTGTACAGTGAAAGAAAATTCACCAGAAAG
TAATAAAAACTATGCATTAGAGATATACGGTCGGCAATCTAAATGCGTCG
AGCATGGTCGACATTGGATCGCCAAGAAAGATTTATTTACGAGAACAATG
TTGGATTGGGGTAGTGGATGTTATAAATATCAATGTACATCGGATGGTTT
AGTTCTCCACGTTGGCAGTAAACAATATCTATGTCAAcacaaatatcaaa
aaattgaagTGGAAGGTTTTATGAGCGATTGGAAAGTGAACGGGTCACTC
ATATGTCCAAGTTGTGAAGAATTTTGTGGTGAAAAGGATGGGAATTTTTG
TCAACAAGAGATTGTTGAAGGAGGACGCGGTTTTGTTGCAAACATTATTG
ATGATGATCCAGAAGAGGACCGTGAAATCACTCTTGATGTCAATTTTTCA
GTTCAGATGAAATCAAAAGGTTGGGTAATTGTATCAATGGTGCTATTTgt
gtatatttttatttcatgtaCTACTCG Coding sequence (CDS) from alignment at sc0000085:347896..349222 >TCONS_00008508 ID=TCONS_00008508|Name=TCONS_00008508|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000085:347896..349222 (Clytia hemisphaerica)
AGTTTACTATCAACAGTTAAGCACGAAATCTATCATGCTCTTGGATTTAG
CGTTGGTTTATTCGCTTTTTATCGAGACAAAAACGGGAAACCATTGAGTA
ACCGATTGAAAAACGGATTACCGGAATACAACCAAGAGACCAATTTATAT
CAATGGAGTGACCGGGTGTTAAAAACAATCATCCGTACAGATTGGGCAGT
TTCCGGTGGAACTGTTAAACATCCCGTACAGCTAATTGTTACACCGACCG
TACAGAGAGAGGTTCGGAAACATTTCGCGTGTGATGATTTAGAAGGGGCG
GAACTGGAAAATCAGGGCGGTGAAGGTACGGCGTCAACGCATTGGGAGAA
GCGCTTGTTTGAGAACGAGGCTATGACAGGAACTTATACACAACACCCAG
TTTTCTCAAGGATCACATTAGCTTTAATGGAAGATACAGAATGGTATAAA
GCTAATTACGCCATGGCTGAAGATTTAGATTGGGGTAAGAACTTAGGCTG
TTTGTTTGTTAAAAACAATTGTAGAGCGTGGATAGCGAACAGTATTGAGC
AGAAATTACACACGGCACCTTTCTGTGCAACTCTCAAACAATCACCTTTA
CACATGAGATGCACGCATAGTAAACTTTCACTCGCTTTATGTAATCTGGT
GAAATATTCATCTACATTACCAAGAGATTTCCAATACTTCGATAAGTTGG
GTCACATCTCAGTCAAAGACATCGCCACGTATGGTGGTGCGGTAGAATTG
GCagatttttgtccgttttatcaaaaatttacattgACGGAAGAAAGCGG
GCGTAAACGCGGTACAACGTGTACAGTGAAAGAAAATTCACCAGAAAGTA
ATAAAAACTATGCATTAGAGATATACGGTCGGCAATCTAAATGCGTCGAG
CATGGTCGACATTGGATCGCCAAGAAAGATTTATTTACGAGAACAATGTT
GGATTGGGGTAGTGGATGTTATAAATATCAATGTACATCGGATGGTTTAG
TTCTCCACGTTGGCAGTAAACAATATCTATGTCAAcacaaatatcaaaaa
attgaagTGGAAGGTTTTATGAGCGATTGGAAAGTGAACGGGTCACTCAT
ATGTCCAAGTTGTGAAGAATTTTGTGGTGAAAAGGATGGGAATTTTTGTC
AACAAGAGATTGTTGAAGGAGGACGCGGTTTTGTTGCAAACATTATTGAT
GATGATCCAGAAGAGGACCGTGAAATCACTCTTGATGTCAATTTTTCAGT
TCAGATGAAATCAAAAGGTTGGGTAATTGTATCAATGGTGCTATTTgtgt
atatttttatttcatgtaCTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008508-exon-sc0000085-1491911889:347896..349222 | TCONS_00008508-exon-sc0000085-1491911889:347896..349222 | Clytia hemisphaerica | exon |
| TCONS_00008508-exon-sc0000085-1510915933:347896..349222 | TCONS_00008508-exon-sc0000085-1510915933:347896..349222 | Clytia hemisphaerica | exon |
| TCONS_00008508-exon-sc0000085-1575043694:347896..349222 | TCONS_00008508-exon-sc0000085-1575043694:347896..349222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:347896..349222 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001577 | Peptidase_M8 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
| GO:0007155 | cell adhesion |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007155 |
cell adhesion |
| biological_process |
GO:0006508 |
proteolysis |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
Blast
BLAST of TCONS_00008508 vs. Swiss-Prot (Human)
Match: LMLN (Leishmanolysin-like peptidase OS=Homo sapiens GN=LMLN PE=2 SV=2) HSP 1 Score: 325.094 bits (832), Expect = 1.745e-103 Identity = 167/375 (44.53%), Postives = 223/375 (59.47%), Query Frame = -3
Query: 201 LLSTVKHEIYHALGFSVGLFAFYRDKNGKPLSNRLKNGLPEYNQETNLYQWSDRVLKTIIRTDWAVSGG-TVKHPVQLIVTPTVQREVRKHFACDDLEGAELENQGGEGTASTHWEKRLFENEAMTGTYTQHPVFSRITLALMEDTEWYKANYAMAEDLDWGKNLGCLFVKNNCRAWIANSIEQKLHTAPFCATLKQSPLHMRCTHSKLSLALCNLVKYSSTLPRDFQYFDKLGHISVKDIATYGGAVELADFCPFYQKFTLTEESGRKRGTTCTVKENSPESNKNYALEIYGRQSKCVEHGRHWIAKKDLFTRTMLDWGSGCYKYQCTSDGLVLHVGSKQYLCQHKYQKIEVEGFMSDWKVNGSLICPSCEEFC 1322
+LSTVKHE+ HALGFS GLFAFY DK+G PL++R +GLP +N LYQWSD+V++ + R W V V+H V L+VTP V E RKHF C LEG ELENQGG GT HWEKRL ENEAMTG++TQ+ V SRITLALMEDT G+ + +P+C TL+ +PL + C + ++A+CNL K+ LP+++QYFD+L I +D+ YGG+VE+AD+CPF Q+F+ +R + C + EN PE KNY E YG S C+ ++ +K + DWGSGCY+ C+ GL + V YLC Q + V M+ W +G+L+CPSC +FC
Sbjct: 266 MLSTVKHEVIHALGFSAGLFAFYHDKDGNPLTSRFADGLPPFNYSLGLYQWSDKVVRKVERL-WDVRDNKIVRHTVYLLVTPRVVEEARKHFDCPVLEGMELENQGGVGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDT---------------GRQM----------------------LSPYCDTLRSNPLQLTCRQDQRAVAVCNLQKFPKPLPQEYQYFDELSGIPAEDLPYYGGSVEIADYCPFSQEFSWHLSGEYQRSSDCRILENQPEIFKNYGAEKYGPHSVCLIQKSAFVMEKCERKLSYPDWGSGCYQVSCSPQGLKVWVQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLCPSCWDFC 602
The following BLAST results are available for this feature:
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