TCONS_00008501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008501
Unique NameTCONS_00008501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008501 ID=TCONS_00008501|Name=TCONS_00008501|organism=Clytia hemisphaerica|type=transcript|length=1775bp
GTATAATCTCTGATAAACatcttaattttcatttttcacttttcatcatC
TTGTTAAATATCTGATAAAGTGGGCTATGCATATATGGTTAAATATTCTA
TAAAGTTTAAAATAGTGATAACAGTGATATTTCAATCGTCAACAGTGGTC
AAAAGAGCCTGATATTTCACCTCCATTGTAAAATTGCATGGGGCACTATT
GAAAATGATTGATTATTTGTGACAATAGCAAATGTTGAGGCTATAAAAAT
GCTACTGACGTTTTGAAGAAGTTATCGAAGAGTATCAACAAGAAAAGCAT
GCATTTTAGATTCCTAAAGAAAAATATAACtcgttgaaaaaatatttata
aaagcTTGAAACCAACCCTAATCTTCTCACAAGCTGTTAGATGTTAGagc
ctcaaaatttcaaaattttgctatCGATTTTGCCATAACCGTTAATTTTC
AGAAAGTCTTCATAAACTTCGATCACAGCGAACGCATTAGTAGCTGGATC
TCTTTCAATGGCACCTTGAAAagtcacgtgatgtatattgtTCTTTTGAT
CGTGATAATAACCTCCCGCATGGAAATGTCCCGCTAGACAAGCAACCACG
CAGTCAAAACAATGAACCATTCGCATCACCTCCGCCGCGTTCCAAATCAA
GGACGCTTCACGTGAAGCGCGTGCATCAAGGGGAACGTGCGTCAGGAGAA
TAACTTTCTGATTTTGTTGAGTAGCAGTAAGAAGTTCGTTATGCAGCCAA
TTAAGTTGAGTATTGGAGAGAGCACCATTCCAATTGACAATGGACGGATA
CTTATCATCCTTCTTGTACTTCTTCAAAGTATTGACCGCCTTAGTGTGCA
GGTCACAACCTACGGGACGCGACATATCTCCTACGTCATACGCATCTAAC
GCAACGAAACGGAAACCTTTGTACGTGAATGAGTAATAATATCCGAATTC
GTTGTTAATCTTCGCGTCGTCCAAATCCAAACTGGACGCAGATCCGGAAG
GAGCTACAAAGGAGTTAAGTTCACTTTTCCACAGTTCGGCACGCGAGTAA
TTATAAAACTCATGGTTTCCCCATAAGTGGCACATGTAGGGCGTTTTTTC
TTCCTCGCTGGCGCCGTCGAGGGCGCTATAAACGCCCGAATCGGTTTTTT
GCACGGGCAATCCGACAGATTTGAATTCTTTGACAACATTGGTTAAGTTT
CGGAAATCATTTTCTAGATGACCATGCTTCCCACTGAATCCATCCACAAT
GTCACCCAGCTGAATGGCAAAGTCCACTTTATTGTCGTTCCACGTGTCAA
CGGCCTCTTTGAACTTGTGCAGCGCGTGTCGATAAAATCTCATGAAAGTT
CGATGGAAGTTATATGCGTTATCGATGTTAGCATGTTGAACATCCGCTAT
GACACCAAATCTCATCAAAGGTTCCTCTGTTGGTGCCATGATCGCCAGAA
TGATGAAAactgaattgtttttttatatattttaactGTAAAGTAAAGAT
GGCGAACATATGTGAAGAATACCAAGTACTATGatagaaaattaaaataa
tacaTATATCTCTGTGTAATGAATGGAAAGGGACTTCTCTAGTTGACAAT
ACTATAATATACCTTTGTACTTGGTAAATTATATACTGTATGTTACTTAA
ACAAGAAGCGAGAAAAGAGCAGGGGAAACGTCGAAGCTCCAACGTTCAAT
TTGTTTTCGAAGATAAATCCATCCCCTGAAAAACATCAACATTTATACCT
TGAAAACCTCACTGTTTCATCAATA
Run BLAST on NCBI

protein sequence of TCONS_00008501-protein

>TCONS_00008501-protein ID=TCONS_00008501-protein|Name=TCONS_00008501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MAPTEEPLMRFGVIADVQHANIDNAYNFHRTFMRFYRHALHKFKEAVDTW
NDNKVDFAIQLGDIVDGFSGKHGHLENDFRNLTNVVKEFKSVGLPVQKTD
SGVYSALDGASEEEKTPYMCHLWGNHEFYNYSRAELWKSELNSFVAPSGS
ASSLDLDDAKINNEFGYYYSFTYKGFRFVALDAYDVGDMSRPVGCDLHTK
AVNTLKKYKKDDKYPSIVNWNGALSNTQLNWLHNELLTATQQNQKVILLT
HVPLDARASREASLIWNAAEVMRMVHCFDCVVACLAGHFHAGGYYHDQKN
NIHHVTFQGAIERDPATNAFAVIEVYEDFLKINGYGKIDSKILKF
Run BLAST on NCBI

transcript from alignment at sc0000085:171063..172837

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008501 ID=TCONS_00008501|Name=TCONS_00008501|organism=Clytia hemisphaerica|type=transcript|length=1775bp|location=Sequence derived from alignment at sc0000085:171063..172837 (Clytia hemisphaerica)
TATTGATGAAACAGTGAGGTTTTCAAGGTATAAATGTTGATGTTTTTCAG
GGGATGGATTTATCTTCGAAAACAAATTGAACGTTGGAGCTTCGACGTTT
CCCCTGCTCTTTTCTCGCTTCTTGTTTAAGTAACATACAGTATATAATTT
ACCAAGTACAAAGGTATATTATAGTATTGTCAACTAGAGAAGTCCCTTTC
CATTCATTACACAGAGATATAtgtattattttaattttctatCATAGTAC
TTGGTATTCTTCACATATGTTCGCCATCTTTACTTTACagttaaaatata
taaaaaaacaattcagtTTTCATCATTCTGGCGATCATGGCACCAACAGA
GGAACCTTTGATGAGATTTGGTGTCATAGCGGATGTTCAACATGCTAACA
TCGATAACGCATATAACTTCCATCGAACTTTCATGAGATTTTATCGACAC
GCGCTGCACAAGTTCAAAGAGGCCGTTGACACGTGGAACGACAATAAAGT
GGACTTTGCCATTCAGCTGGGTGACATTGTGGATGGATTCAGTGGGAAGC
ATGGTCATCTAGAAAATGATTTCCGAAACTTAACCAATGTTGTCAAAGAA
TTCAAATCTGTCGGATTGCCCGTGCAAAAAACCGATTCGGGCGTTTATAG
CGCCCTCGACGGCGCCAGCGAGGAAGAAAAAACGCCCTACATGTGCCACT
TATGGGGAAACCATGAGTTTTATAATTACTCGCGTGCCGAACTGTGGAAA
AGTGAACTTAACTCCTTTGTAGCTCCTTCCGGATCTGCGTCCAGTTTGGA
TTTGGACGACGCGAAGATTAACAACGAATTCGGATATTATTACTCATTCA
CGTACAAAGGTTTCCGTTTCGTTGCGTTAGATGCGTATGACGTAGGAGAT
ATGTCGCGTCCCGTAGGTTGTGACCTGCACACTAAGGCGGTCAATACTTT
GAAGAAGTACAAGAAGGATGATAAGTATCCGTCCATTGTCAATTGGAATG
GTGCTCTCTCCAATACTCAACTTAATTGGCTGCATAACGAACTTCTTACT
GCTACTCAACAAAATCAGAAAGTTATTCTCCTGACGCACGTTCCCCTTGA
TGCACGCGCTTCACGTGAAGCGTCCTTGATTTGGAACGCGGCGGAGGTGA
TGCGAATGGTTCATTGTTTTGACTGCGTGGTTGCTTGTCTAGCGGGACAT
TTCCATGCGGGAGGTTATTATCACGATCAAAAGAacaatatacatcacgt
gactTTTCAAGGTGCCATTGAAAGAGATCCAGCTACTAATGCGTTCGCTG
TGATCGAAGTTTATGAAGACTTTCTGAAAATTAACGGTTATGGCAAAATC
GatagcaaaattttgaaattttgaggctCTAACATCTAACAGCTTGTGAG
AAGATTAGGGTTGGTTTCAAgcttttataaatattttttcaacgaGTTAT
ATTTTTCTTTAGGAATCTAAAATGCATGCTTTTCTTGTTGATACTCTTCG
ATAACTTCTTCAAAACGTCAGTAGCATTTTTATAGCCTCAACATTTGCTA
TTGTCACAAATAATCAATCATTTTCAATAGTGCCCCATGCAATTTTACAA
TGGAGGTGAAATATCAGGCTCTTTTGACCACTGTTGACGATTGAAATATC
ACTGTTATCACTATTTTAAACTTTATAGAATATTTAACCATATATGCATA
GCCCACTTTATCAGATATTTAACAAGatgatgaaaagtgaaaaatgaaaa
ttaagatGTTTATCAGAGATTATAC

Coding sequence (CDS) from alignment at sc0000085:171063..172837

>TCONS_00008501 ID=TCONS_00008501|Name=TCONS_00008501|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0000085:171063..172837 (Clytia hemisphaerica)
ATGGCACCAACAGAGGAACCTTTGATGAGATTTGGTGTCATAGCGGATGT
TCAACATGCTAACATCGATAACGCATATAACTTCCATCGAACTTTCATGA
GATTTTATCGACACGCGCTGCACAAGTTCAAAGAGGCCGTTGACACGTGG
AACGACAATAAAGTGGACTTTGCCATTCAGCTGGGTGACATTGTGGATGG
ATTCAGTGGGAAGCATGGTCATCTAGAAAATGATTTCCGAAACTTAACCA
ATGTTGTCAAAGAATTCAAATCTGTCGGATTGCCCGTGCAAAAAACCGAT
TCGGGCGTTTATAGCGCCCTCGACGGCGCCAGCGAGGAAGAAAAAACGCC
CTACATGTGCCACTTATGGGGAAACCATGAGTTTTATAATTACTCGCGTG
CCGAACTGTGGAAAAGTGAACTTAACTCCTTTGTAGCTCCTTCCGGATCT
GCGTCCAGTTTGGATTTGGACGACGCGAAGATTAACAACGAATTCGGATA
TTATTACTCATTCACGTACAAAGGTTTCCGTTTCGTTGCGTTAGATGCGT
ATGACGTAGGAGATATGTCGCGTCCCGTAGGTTGTGACCTGCACACTAAG
GCGGTCAATACTTTGAAGAAGTACAAGAAGGATGATAAGTATCCGTCCAT
TGTCAATTGGAATGGTGCTCTCTCCAATACTCAACTTAATTGGCTGCATA
ACGAACTTCTTACTGCTACTCAACAAAATCAGAAAGTTATTCTCCTGACG
CACGTTCCCCTTGATGCACGCGCTTCACGTGAAGCGTCCTTGATTTGGAA
CGCGGCGGAGGTGATGCGAATGGTTCATTGTTTTGACTGCGTGGTTGCTT
GTCTAGCGGGACATTTCCATGCGGGAGGTTATTATCACGATCAAAAGAac
aatatacatcacgtgactTTTCAAGGTGCCATTGAAAGAGATCCAGCTAC
TAATGCGTTCGCTGTGATCGAAGTTTATGAAGACTTTCTGAAAATTAACG
GTTATGGCAAAATCGatagcaaaattttgaaattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004750XLOC_004750Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008501-proteinTCONS_00008501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008501-exon-sc0000085-1491911889:171063..172837TCONS_00008501-exon-sc0000085-1491911889:171063..172837Clytia hemisphaericaexon
TCONS_00008501-exon-sc0000085-1510915933:171063..172837TCONS_00008501-exon-sc0000085-1510915933:171063..172837Clytia hemisphaericaexon
TCONS_00008501-exon-sc0000085-1575043694:171063..172837TCONS_00008501-exon-sc0000085-1575043694:171063..172837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:171063..172837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.289	14.139	2.51381	0.953635	5.46873	4.80431	8.56322	12.6796	15.54	23.127	9.80074	11.6028	14.5699	13.7227	4.75978	7.64815	7.04091	8.54151	9.60903	14.8433	7.75407	7.14765	27.9499	18.3258	9.17003	9.81215	25.8146	30.6664	20.5688	18.0102
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004843Calcineurin-like_PHP_ApaH
IPR029052Metallo-depent_PP-like
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00008501 vs. Swiss-Prot (Human)
Match: ADPRM (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Homo sapiens GN=ADPRM PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.532e-52
Identity = 113/357 (31.65%), Postives = 183/357 (51.26%), Query Frame = -1 
Query:  405 MAPTEEPLMRFGVIADVQHANIDNAYNFHRTFMRFYRHALHKFKEAVDTWNDNK--VDFAIQLGDIVDGFSGKHGHLENDFRNLTNVVKEFKSVGLPVQKTDSGVYSALDGASEEEKTPYMCHLWGNHEFYNYSRAELWKSELNSFVAPSGXXXXXXXXXAKINNEFGYYYSFT-YKGFRFVALDAYDVGDMSRPVGCDLHTKAVNTLKKYKKDDKY--------PSIVNWNGALSNTQLNWLHNELLTATQQNQ-KVILLTHVPLDARASREASLIWNAAEVMRMVHCFDCVVACLAGHFHAGGYYHDQKNNIHHVTFQGAIERDPATNAFAVIEVYEDFLKINGYGKIDSKILKF 1439
            ++ + E L  FGVIADVQ A++++ +NF  T  R+YRH+L   + A++ WN+        +QLGDI+DG++ ++   +   ++L  V+  FK + +PV                        H WGNHEFYN+SR  L  S+LN+          +      + +E  Y Y F  +  FRF+ LDAYD+  +        + + +  L+++  + +         P  V +NG  S  QLNWL NE+LT +  NQ KV++++H+P+   AS    L WN  + + ++   +CVV   AGH H GGY  D    ++HV  +G IE  P + AF  + VY D + + G G++  +I+ +
Sbjct:   10 LSDSSERLFSFGVIADVQFADLEDGFNFQGTRRRYYRHSLLHLQGAIEDWNNESSMPCCVLQLGDIIDGYNAQYNASK---KSLELVMDMFKRLKVPVH-----------------------HTWGNHEFYNFSREYLTHSKLNT----KFLEDQIVHHPETMPSEDYYAYHFVPFPKFRFILLDAYDLSVLGVDQSSPKYEQCMKILREHNPNTELNSPQGLSEPQFVQFNGGFSQEQLNWL-NEVLTFSDTNQEKVVIVSHLPIYPDASDNVCLAWNYRDALAVIWSHECVVCFFAGHTHDGGYSED-PFGVYHVNLEGVIETAPDSQAFGTVHVYPDKMMLKGRGRVPDRIMNY 334
The following BLAST results are available for this feature:
BLAST of TCONS_00008501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADPRM3.532e-5231.65Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
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