TCONS_00008497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008497
Unique NameTCONS_00008497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length846

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008497 ID=TCONS_00008497|Name=TCONS_00008497|organism=Clytia hemisphaerica|type=transcript|length=846bp
AGAACATGCAGCAAAGGATATAGTACCGAAGAATCAAACCATTATAGATC
ACTCATCTATACCAATCAACTCTAACAAGGTCGATTCATGGATAGATGAG
CTCGACGTCAACAAACCACCGTATCAACTCGCCACATGGTTCGTACAGCA
AGGTCTGCCAAGGATCAGAATACCATGGTTTGATGGCACTCCATCAAGCT
ACGTAGAATTCGTAACCAGTTTTAGAGATCTTGTCCACAACCAAGGATAT
TTGACCACGCTTCAGAAATGCATTTATCTACATCAAGCTGTACAAGGGGA
AGTCAAGAGGTCGATCCAAGGCTTCAGAAATGACCATGAAGGCTACGTCC
TCGCACTCAGAAGAATAAAGTACATGTTTGGTTAACGATCAAGAATTGCT
GAGTCCGTCATCAGAAAGATTTTCGACTACGAACCGATTGGCAACAGAGA
TCAAACTTCGCTCACTGAGTTCTACTACACATTAAGTGACGGTGACGCTT
GGTGACGCTAAATTATTGTCTTACCCTTAGAAGTTCCTGTGAACCAAATC
TCACCCACTTGGAAGCCTGGCTTCAAGAAAGGATTCTTGCNTCCTGTGAA
TCAAATCTCACCCACTTGGAAGCCTGGCTTCAAGAAAGGATTCTTGCATC
CAAAGACTCTTATCTACCAAGAAAGAATGATGATAGAAAGGATCACAGGG
ACCATAAAGGTCAAAGAGATTCAAGAAGTGGACAAGGACAGGGGAAGCAA
AATCAATCACAATACAATGGCCATCGATCAAATTGGTCTGGCAAAATTGG
GGATGGAAAAGGAACAGGACAGcaaggaaaaaaaacaaaatccaaA
Run BLAST on NCBI

protein sequence of TCONS_00008497-protein

>TCONS_00008497-protein ID=TCONS_00008497-protein|Name=TCONS_00008497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
EHAAKDIVPKNQTIIDHSSIPINSNKVDSWIDELDVNKPPYQLATWFVQQ
GLPRIRIPWFDGTPSSYVEFVTSFRDLVHNQGYLTTLQKCIYLHQAVQGE
VKRSIQGFRNDHEGYVLALRRIKYMFG
Run BLAST on NCBI

transcript from alignment at sc0000085:103035..103880

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008497 ID=TCONS_00008497|Name=TCONS_00008497|organism=Clytia hemisphaerica|type=transcript|length=846bp|location=Sequence derived from alignment at sc0000085:103035..103880 (Clytia hemisphaerica)
TttggattttgttttttttccttgCTGTCCTGTTCCTTTTCCATCCCCAA
TTTTGCCAGACCAATTTGATCGATGGCCATTGTATTGTGATTGATTTTGC
TTCCCCTGTCCTTGTCCACTTCTTGAATCTCTTTGACCTTTATGGTCCCT
GTGATCCTTTCTATCATCATTCTTTCTTGGTAGATAAGAGTCTTTGGATG
CAAGAATCCTTTCTTGAAGCCAGGCTTCCAAGTGGGTGAGATTTGATTCA
CAGGANGCAAGAATCCTTTCTTGAAGCCAGGCTTCCAAGTGGGTGAGATT
TGGTTCACAGGAACTTCTAAGGGTAAGACAATAATTTAGCGTCACCAAGC
GTCACCGTCACTTAATGTGTAGTAGAACTCAGTGAGCGAAGTTTGATCTC
TGTTGCCAATCGGTTCGTAGTCGAAAATCTTTCTGATGACGGACTCAGCA
ATTCTTGATCGTTAACCAAACATGTACTTTATTCTTCTGAGTGCGAGGAC
GTAGCCTTCATGGTCATTTCTGAAGCCTTGGATCGACCTCTTGACTTCCC
CTTGTACAGCTTGATGTAGATAAATGCATTTCTGAAGCGTGGTCAAATAT
CCTTGGTTGTGGACAAGATCTCTAAAACTGGTTACGAATTCTACGTAGCT
TGATGGAGTGCCATCAAACCATGGTATTCTGATCCTTGGCAGACCTTGCT
GTACGAACCATGTGGCGAGTTGATACGGTGGTTTGTTGACGTCGAGCTCA
TCTATCCATGAATCGACCTTGTTAGAGTTGATTGGTATAGATGAGTGATC
TATAATGGTTTGATTCTTCGGTACTATATCCTTTGCTGCATGTTCT

Coding sequence (CDS) from alignment at sc0000085:103035..103880

>TCONS_00008497 ID=TCONS_00008497|Name=TCONS_00008497|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000085:103035..103880 (Clytia hemisphaerica)
TTAACCAAACATGTACTTTATTCTTCTGAGTGCGAGGACGTAGCCTTCAT
GGTCATTTCTGAAGCCTTGGATCGACCTCTTGACTTCCCCTTGTACAGCT
TGATGTAGATAAATGCATTTCTGAAGCGTGGTCAAATATCCTTGGTTGTG
GACAAGATCTCTAAAACTGGTTACGAATTCTACGTAGCTTGATGGAGTGC
CATCAAACCATGGTATTCTGATCCTTGGCAGACCTTGCTGTACGAACCAT
GTGGCGAGTTGATACGGTGGTTTGTTGACGTCGAGCTCATCTATCCATGA
ATCGACCTTGTTAGAGTTGATTGGTATAGATGAGTGATCTATAATGGTTT
GATTCTTCGGTACTATATCCTTTGCTGCATGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004746XLOC_004746Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008497-proteinTCONS_00008497-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008497-exon-sc0000085-1491911889:103035..103880TCONS_00008497-exon-sc0000085-1491911889:103035..103880Clytia hemisphaericaexon
TCONS_00008497-exon-sc0000085-1510915933:103035..103880TCONS_00008497-exon-sc0000085-1510915933:103035..103880Clytia hemisphaericaexon
TCONS_00008497-exon-sc0000085-1575043694:103035..103880TCONS_00008497-exon-sc0000085-1575043694:103035..103880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:103035..103880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.254297	0.162934	0.0630608	0.0745099	0	0.0593513	0	0.134071	0.0469331	0.0664744	0.16928	0.0416109	0.0402169	0	0	0	0.20905	0	0	0	0	0.11303	0	0.0799271	0.0597973	0.0568023	0	0	0.0865331	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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