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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008493 ID=TCONS_00008493|Name=TCONS_00008493|organism=Clytia hemisphaerica|type=transcript|length=1123bp
tgaagaagaagaagacacAAATTTTAATCATAGCTTTGCTTTTCGTGTTA
ACTTCTCAATAAATTAAAAACAGAGGGAGGATGAAGAAAGCAGCACAgac
tttcaaaattgttttgatttttttgctttatGGAGCTTGGTGTTCCGAAA
ACAGTCCTTCGATCAAACATACAGAATTTCCGTTATCACAGATATATATC
CATGCAGAAGCTGTTGAAACAACCAGCGATGATGACGAGAGTTGGAATCT
GTGCAGTGCAGGAAAACCTAAATGCTGTTCATGTGATGACTCTTGTTACA
AACTCAAAAATTGTTGCGTTGACAAATTCTGGCAAAAAGATGAAAACGCA
AAAacttattttgatcattttatcCGGCAGATGACGAGTGGCCGGGATTT
AGGATATCAATGTCACCAGATATTTAACAGTGCCATCATGGAATATGATC
TTGGAATGGCGAAACAGCAGAATTATCTAATGATCTCAACGTGTAACAAC
AACCTAACAGAACCTACTCATTAGAAATGTTTAACCTCCTACCACACGTC
CACATTTTCAGACTCACAGCCGGTCTTCGATGCAGAAGGAAATCTTTATA
GAAGTTCATTTTGTGCTGAATGCAACAATATTATAAATTTCACCAACGTT
GACATCAAGATCACTGAATTACCgaattcctttaaggtaaaatTGGATAA
GAACTTTGATTTGTTTCAATGTATGCAAACTGTTTTAAAACGTGATTGTA
TAAGCGAAGAATTCAGTGACCAGTGTTTATCCTACACAGCACCTATCAAA
GCAGGTATCGAAATTTACCCAAATTACCATTGCTTGAAATGCATGAGTGA
TTTAGGCCAATATGAACACCTGTCGTATGCATGTAATGAATTGGGAAGAT
ATGAATTTCCAAGTTGGTCCCTCACCGTTGACTATTCAGGAAAAATTCAT
CTTTTCCAAGACAGGGCTGCAACTATAAAGACCCAGGACGTTCTCAATAA
CACACAAAACTCCACTTTCAATAACTCAACGAACAACCTCCCTGCAGGTT
CGGAATATGAAATCTTTGGTGAAATCGAACGTTATATTGTCATGGTGGGT
ACCAGCATCAGTTTAGTTTGTTA Run BLAST on NCBI protein sequence of TCONS_00008493-protein >TCONS_00008493-protein ID=TCONS_00008493-protein|Name=TCONS_00008493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MKKAAQTFKIVLIFLLYGAWCSENSPSIKHTEFPLSQIYIHAEAVETTSD
DDESWNLCSAGKPKCCSCDDSCYKLKNCCVDKFWQKDENAKTYFDHFIRQ
MTSGRDLGYQCHQIFNSAIMEYDLGMAKQQNYLMISTCNNNLTEPTH Run BLAST on NCBI transcript from alignment at sc0000085:64944..66066 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008493 ID=TCONS_00008493|Name=TCONS_00008493|organism=Clytia hemisphaerica|type=transcript|length=1123bp|location=Sequence derived from alignment at sc0000085:64944..66066 (Clytia hemisphaerica)
TAACAAACTAAACTGATGCTGGTACCCACCATGACAATATAACGTTCGAT
TTCACCAAAGATTTCATATTCCGAACCTGCAGGGAGGTTGTTCGTTGAGT
TATTGAAAGTGGAGTTTTGTGTGTTATTGAGAACGTCCTGGGTCTTTATA
GTTGCAGCCCTGTCTTGGAAAAGATGAATTTTTCCTGAATAGTCAACGGT
GAGGGACCAACTTGGAAATTCATATCTTCCCAATTCATTACATGCATACG
ACAGGTGTTCATATTGGCCTAAATCACTCATGCATTTCAAGCAATGGTAA
TTTGGGTAAATTTCGATACCTGCTTTGATAGGTGCTGTGTAGGATAAACA
CTGGTCACTGAATTCTTCGCTTATACAATCACGTTTTAAAACAGTTTGCA
TACATTGAAACAAATCAAAGTTCTTATCCAattttaccttaaaggaattc
GGTAATTCAGTGATCTTGATGTCAACGTTGGTGAAATTTATAATATTGTT
GCATTCAGCACAAAATGAACTTCTATAAAGATTTCCTTCTGCATCGAAGA
CCGGCTGTGAGTCTGAAAATGTGGACGTGTGGTAGGAGGTTAAACATTTC
TAATGAGTAGGTTCTGTTAGGTTGTTGTTACACGTTGAGATCATTAGATA
ATTCTGCTGTTTCGCCATTCCAAGATCATATTCCATGATGGCACTGTTAA
ATATCTGGTGACATTGATATCCTAAATCCCGGCCACTCGTCATCTGCCGg
ataaaatgatcaaaataagtTTTTGCGTTTTCATCTTTTTGCCAGAATTT
GTCAACGCAACAATTTTTGAGTTTGTAACAAGAGTCATCACATGAACAGC
ATTTAGGTTTTCCTGCACTGCACAGATTCCAACTCTCGTCATCATCGCTG
GTTGTTTCAACAGCTTCTGCATGGATATATATCTGTGATAACGGAAATTC
TGTATGTTTGATCGAAGGACTGTTTTCGGAACACCAAGCTCCataaagca
aaaaaatcaaaacaattttgaaagtcTGTGCTGCTTTCTTCATCCTCCCT
CTGTTTTTAATTTATTGAGAAGTTAACACGAAAAGCAAAGCTATGATTAA
AATTTgtgtcttcttcttcttca Coding sequence (CDS) from alignment at sc0000085:64944..66066 >TCONS_00008493 ID=TCONS_00008493|Name=TCONS_00008493|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000085:64944..66066 (Clytia hemisphaerica)
CTAATGAGTAGGTTCTGTTAGGTTGTTGTTACACGTTGAGATCATTAGAT
AATTCTGCTGTTTCGCCATTCCAAGATCATATTCCATGATGGCACTGTTA
AATATCTGGTGACATTGATATCCTAAATCCCGGCCACTCGTCATCTGCCG
gataaaatgatcaaaataagtTTTTGCGTTTTCATCTTTTTGCCAGAATT
TGTCAACGCAACAATTTTTGAGTTTGTAACAAGAGTCATCACATGAACAG
CATTTAGGTTTTCCTGCACTGCACAGATTCCAACTCTCGTCATCATCGCT
GGTTGTTTCAACAGCTTCTGCATGGATATATATCTGTGATAACGGAAATT
CTGTATGTTTGATCGAAGGACTGTTTTCGGAACACCAAGCTCCataaagc
aaaaaaatcaaaacaattttgaaagtcTGTGCTGCTTTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008493-exon-sc0000085-1491911889:64944..66066 | TCONS_00008493-exon-sc0000085-1491911889:64944..66066 | Clytia hemisphaerica | exon |
| TCONS_00008493-exon-sc0000085-1510915933:64944..66066 | TCONS_00008493-exon-sc0000085-1510915933:64944..66066 | Clytia hemisphaerica | exon |
| TCONS_00008493-exon-sc0000085-1575043694:64944..66066 | TCONS_00008493-exon-sc0000085-1575043694:64944..66066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:64944..66066 . |
Blast
The following BLAST results are available for this feature:
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