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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008491 ID=TCONS_00008491|Name=TCONS_00008491|organism=Clytia hemisphaerica|type=transcript|length=1227bp
atatttttgaaaatttttttcacattgatgatgatctaagattgaagagt
cactcctgtgNttgaatgaatatttttgaaaatttttttcacattgatga
tgatctaagattgaagagtcactcctgtgaaaatggtaattataccacaa
ttctacaaaaagttgatttttttcttcttcatttttcattttcattttcc
ttttttttctcaagttttTTACTTgttaatattccactcacgaatatctt
tttaacgagcacaaaatcgcaacttgattggaattctatcaaaagttaca
gccatttttttctccagctgcaaattatttcgagacagactttagttttc
tttgtaattgatCATGACTTCCACTGTAAAAGTATCGTTTGGATAAGGAT
TGCCATTACTCAAAGAGACGAAATGATCTATACCACGACCATTCTCAGTA
TGCGGTGGTTTCACAAAGCTTTCCGTAACATCAGCTGTTTGATTAGTATT
GAACGAGATATATGAACGCCTGTTTCCACTTCGGTCCAAAGCGTAAAATT
CAATCATTGCTTTCATAGGCCAATTGATGGTATCATCGAAACTTCCCTGC
ACTGTCCGAGCACATATTGCCATATTCTTATTTCTGCGTGGGCCGTTACC
ATTTGGAAATAATTCAATTTCAAGTTTGTGACCTCTTGAGGTATAAAAAC
ATTTTGTGAGCTCGTAACCAGGGTCATTTTTCGCTTTCTGTTTTTCATCA
CTGAACTGATTAATTTTCCAAATGAAATGATCGGTAANTTACCTTCATTA
TGTAATTTCAAGTTTGTGACCTCTTGAGGTATAAAAACATTTTGTGAGCT
CGTAACCAGGGTCATTTTTCGCTTTCTGTTTTTCATCACTGAACTGATTA
ATTTTCCAAATGAAATGATCGGTAAATGGTGAATTTACTTCTggtttctt
ttcaatttcatttaatttttccaTGATATTTGAAATCTGTATAGCCTGAG
TCTTAATCTCAGTTTCTTGAAATTTGAGCTGTCCTTCCTGCAAAGTGATT
CTTTTAAGAGCTAAGTCTAAATGCAATCCAACAGCTTCTTGATTATGTTT
CAGCAAACCTCCAGAAAGAAtctgaaaaccaaaaaatttcataGTCTAAT
TAGCAGTTTTATTCACAGTCATTGTTAACCCGATTTGATTAAGGATGGGA
GAAGGGTAGAATCTACTACTATCTTCT Run BLAST on NCBI protein sequence of TCONS_00008491-protein >TCONS_00008491-protein ID=TCONS_00008491-protein|Name=TCONS_00008491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MKFFGFQILSGGLLKHNQEAVGLHLDLALKRITLQEGQLKFQETEIKTQA
IQISNIMEKLNEIEKKPEVNSPFTDHFIWKINQFSDEKQKAKNDPGYELT
KCFYTSRGHKLEIT Run BLAST on NCBI transcript from alignment at sc0000085:6..1232 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008491 ID=TCONS_00008491|Name=TCONS_00008491|organism=Clytia hemisphaerica|type=transcript|length=1227bp|location=Sequence derived from alignment at sc0000085:6..1232 (Clytia hemisphaerica)
AGAAGATAGTAGTAGATTCTACCCTTCTCCCATCCTTAATCAAATCGGGT
TAACAATGACTGTGAATAAAACTGCTAATTAGACtatgaaattttttggt
tttcagaTTCTTTCTGGAGGTTTGCTGAAACATAATCAAGAAGCTGTTGG
ATTGCATTTAGACTTAGCTCTTAAAAGAATCACTTTGCAGGAAGGACAGC
TCAAATTTCAAGAAACTGAGATTAAGACTCAGGCTATACAGATTTCAAAT
ATCAtggaaaaattaaatgaaattgaaaagaaaccAGAAGTAAATTCACC
ATTTACCGATCATTTCATTTGGAAAATTAATCAGTTCAGTGATGAAAAAC
AGAAAGCGAAAAATGACCCTGGTTACGAGCTCACAAAATGTTTTTATACC
TCAAGAGGTCACAAACTTGAAATTACATAATGAAGGTAANTTACCGATCA
TTTCATTTGGAAAATTAATCAGTTCAGTGATGAAAAACAGAAAGCGAAAA
ATGACCCTGGTTACGAGCTCACAAAATGTTTTTATACCTCAAGAGGTCAC
AAACTTGAAATTGAATTATTTCCAAATGGTAACGGCCCACGCAGAAATAA
GAATATGGCAATATGTGCTCGGACAGTGCAGGGAAGTTTCGATGATACCA
TCAATTGGCCTATGAAAGCAATGATTGAATTTTACGCTTTGGACCGAAGT
GGAAACAGGCGTTCATATATCTCGTTCAATACTAATCAAACAGCTGATGT
TACGGAAAGCTTTGTGAAACCACCGCATACTGAGAATGGTCGTGGTATAG
ATCATTTCGTCTCTTTGAGTAATGGCAATCCTTATCCAAACGATACTTTT
ACAGTGGAAGTCATGatcaattacaaagaaaactaaagtctgtctcgaaa
taatttgcagctggagaaaaaaatggctgtaacttttgatagaattccaa
tcaagttgcgattttgtgctcgttaaaaagatattcgtgagtggaatatt
aacAAGTAAaaaacttgagaaaaaaaaggaaaatgaaaatgaaaaatgaa
gaagaaaaaaatcaactttttgtagaattgtggtataattaccattttca
caggagtgactcttcaatcttagatcatcatcaatgtgaaaaaaattttc
aaaaatattcattcaaNcacaggagtgactcttcaatcttagatcatcat
caatgtgaaaaaaattttcaaaaatat Coding sequence (CDS) from alignment at sc0000085:6..1232 >TCONS_00008491 ID=TCONS_00008491|Name=TCONS_00008491|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000085:6..1232 (Clytia hemisphaerica)
atgaaattttttggttttcagaTTCTTTCTGGAGGTTTGCTGAAACATAA
TCAAGAAGCTGTTGGATTGCATTTAGACTTAGCTCTTAAAAGAATCACTT
TGCAGGAAGGACAGCTCAAATTTCAAGAAACTGAGATTAAGACTCAGGCT
ATACAGATTTCAAATATCAtggaaaaattaaatgaaattgaaaagaaacc
AGAAGTAAATTCACCATTTACCGATCATTTCATTTGGAAAATTAATCAGT
TCAGTGATGAAAAACAGAAAGCGAAAAATGACCCTGGTTACGAGCTCACA
AAATGTTTTTATACCTCAAGAGGTCACAAACTTGAAATTACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008491-exon-sc0000085-1491911889:6..1232 | TCONS_00008491-exon-sc0000085-1491911889:6..1232 | Clytia hemisphaerica | exon |
| TCONS_00008491-exon-sc0000085-1510915933:6..1232 | TCONS_00008491-exon-sc0000085-1510915933:6..1232 | Clytia hemisphaerica | exon |
| TCONS_00008491-exon-sc0000085-1575043694:6..1232 | TCONS_00008491-exon-sc0000085-1575043694:6..1232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:6..1232 . |
Blast
The following BLAST results are available for this feature:
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