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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008484 ID=TCONS_00008484|Name=TCONS_00008484|organism=Clytia hemisphaerica|type=transcript|length=4293bpRun BLAST on NCBI protein sequence of Putative cnidarian restricted protein >TCONS_00008484-protein ID=TCONS_00008484-protein|Name=Putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=1285bp METLPREVTSVSKYEIEPFKQGRRVGCYLLGKTLGEGSFAKVKEGLHIITRun BLAST on NCBI transcript from alignment at sc0000085:578068..600516- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008484 ID=TCONS_00008484|Name=TCONS_00008484|organism=Clytia hemisphaerica|type=transcript|length=22449bp|location=Sequence derived from alignment at sc0000085:578068..600516- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000085:578068..600516- >TCONS_00008484 ID=TCONS_00008484|Name=TCONS_00008484|organism=Clytia hemisphaerica|type=CDS|length=38580bp|location=Sequence derived from alignment at sc0000085:578068..600516- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008484 vs. Swiss-Prot (Human)
Match: HUNK (Hormonally up-regulated neu tumor-associated kinase OS=Homo sapiens GN=HUNK PE=2 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 3.131e-107 Identity = 177/368 (48.10%), Postives = 253/368 (68.75%), Query Frame = 2
Query: 104 LPREVTSVSKYEIEPFKQGRRVGCYLLG-KTLGEGSFAKVKEGLHIITGERVAVKIIDKKRAREDRYISKNLRREARIHQLVRHPNIIQLYEVLETDHYYYLIMEYSDGGELLDYICSRKRLDEHVVRRLVSQLVSAVDGMHKSGVVHRDLKIENFLLSHNEDLKIIDFGLSNTLSQDCMQEFERTGVFPQLLNTHCGSPAYAAPELLAQKKYGPQVDIWSIGINMYAMLTGFLPYMMEPFNVMEMYEKMMQRKMTPVPSFLSQACRDLLMRLLEPVAEWRITLKQVMKHKWFTG--TEYIPRSIPLGDMMYQKKELCEPVLAYMKMTLRIRTKDTINAVVSNRAVHASAVYHLLVARLDRYLKNKKE 1198
LP V+ V + + F+ +RVG YL+G + LGEGSFAKV+EGLH++TGE+VA+K+IDKKRA++D Y++KNLRRE +I Q++RHPNI QL ++LET++ YYL+ME GG L+ I +KRL+E RR + QL+SAV+ +H++GVVHRDLKIEN LL + ++K+IDFGLSN C + F +T CGSPAYAAPELLA+KKYGP++D+WSIG+NMYAMLTG LP+ +EPF++ +Y+KM+ ++M P+P+ LS L LLEP R ++Q + ++W T +P ++ + + ++L V+ +M L + D IN V+SNRA H A+Y LL +L+RYL K +
Sbjct: 37 LPAWVSGVPRERLRDFQHHKRVGNYLIGSRKLGEGSFAKVREGLHVLTGEKVAIKVIDKKRAKKDTYVTKNLRREGQIQQMIRHPNITQLLDILETENSYYLVMELCPGGNLMHKIYEKKRLEESEARRYIRQLISAVEHLHRAGVVHRDLKIENLLLDEDNNIKLIDFGLSN-----CAGILGYSDPF----STQCGSPAYAAPELLARKKYGPKIDVWSIGVNMYAMLTGTLPFTVEPFSLRALYQKMVDKEMNPLPTQLSTGAISFLRSLLEPDPVKRPNIQQALANRWLNENYTGKVPCNVTYPNRI-SLEDLSPSVVLHMTEKLGYKNSDVINTVLSNRACHILAIYFLLNKKLERYLSGKSD 394 The following BLAST results are available for this feature:
BLAST of TCONS_00008484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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