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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008483 ID=TCONS_00008483|Name=TCONS_00008483|organism=Clytia hemisphaerica|type=transcript|length=2420bp
GAGAATAAAAAACAACTTTGGTCTTTATAAATTATGGTGTGGATTGATAC
ACCAAGGAGGCAGTTCTGGCCAAATGTGAAGGAGCAAAAAGAGCCTGTAC
CTGGCTGGTTGATCACCAAGGTTGTCAAACAACCTCCACTCAAAGAAGAA
CACACTTCCATAGATGGCAAACGTGAACAAAATGGTAGCCCGTCACCACG
CAACCAACGTAAACATAAACGTGTAATTCACAGACCAGGTACACCTGAAC
AACAAAAGCAAAATACAGACCAGACAAATAATGAGGAGTCAGAGGAACGA
TCTTCATCCGTCTCCGACCGAATACGTCAATTTTCTAAcagaaaaaagaa
tgaagtgTCGACACGCATCCAGACCCCTGAGATCGAAGAAATATTACGTA
ATGTACGAAGCATCAATAAAACTCATCTCAGTGATGACTCAGAAGAAACC
ACGAACGATGAAAATCTCCCGACAACGCCCAAAGGGACGGGCAGCAAATG
GCAGCCACCACAATTTCAAAAGACTAATAGCTATGACTCAAAACCAAGAG
CGTTTATGGATGATACAGATTCTTCTATTTCCAGCACGCCCTCGCCGCCC
TTGATAAATAATGACGAATTTTCAAACGATAGCTGTGATGGCTGCGATGT
CAACAATAACTCGGGAAAGCAAAATGTAGATAAAGCCTTAAACGCAGACA
TGACAAACCCCTCGACAAACAGTAACATTACACCTATAAAAACCATCAAA
ATCTCCAAAAAGACATTAGAGTTGAACGTGAAACAGTTTACGCAGTATAA
CCGTGATCAGAAGAATGAGAATCGATCGAACCTTACATCACATCATCATA
CTTCACTGAAACCCTTACAATTGAAGTTCAATTTTACCGTACGAAAGAAA
AAAgcgtataaagaaaaacaacaaacacgATCCTTAACTGACATTACAAA
CGGCGTTAATAACAAAATGGAAGCGCGGCCGAGCGAAGAACAAATGTTAG
CACCTAAACACAGGTGTAATGAGAGCTGTGATATCGTAAATGGTGAATGC
AAGGAAAAGAGAGATCAGACTATAGAATCAGCTGACTCAGCGAAAATGGA
ACGTACGAACAACAAAAAGACAACCGTCAAAATCATCTCACACAATAGTA
ACCATGGGAACAACAAATCGAACCGCACCAAGGTCTTCTTAACTACCAAA
AAGTCGACCAGTAAAGATCACGGTACCGAAAACGAGAAACAAGATTGTCG
CTTGAATTCGGATAATTGCTCGTTCGATAGCGGATACTTCGGTACAAACT
CGTCAATAACGAATACTACCGAAAATAAAACGAATAGTCATCGTGAAGAA
AACCAagcttcaaaaacaaaacaaacaaaaactccCATAACTCCATCAGA
AATCCATCCAGTTAAATATCGTTGTATACCGGTGTATCAACCGGAGTATG
TGAAAACCGGAACAGTTCATACGaaggaaaatttggaaaagatGGAGGAA
AAAAATGGCGATTCTGCTAATCTTCATAAAAAATGGGGAAGTCAAACGAT
CGAGCCTACTCAAGAACCATTCGATTATTTACCTCGATCAGCAGAATTTA
TAAAGAACATTAAAGAACAATTTCGAcaagaaagagagaaaaagatcGAA
CAGTTGAAAAAAGACGCCGAACGCAAGCCTCTTGTTATCGACTATCGACA
CGCTCgtagccaatcagattcgaaCAAACACGTCCGAAGCCAATTAGATT
CAAATAAGCATGGCTTTCACCAATCAGAAGTAAACAACCAGTTTTCTCGT
AGCCAATCAGAGACGCAAGACGAAGAAAGACAGCCGGGGACAGAATTCAA
AAgatcattttctttgaaacaatATCCAATAGAGCGGACATGTGTTGGTA
CACCAAGTCCGAAATTTCATCGCCGGGCAACATACCATCCAACCAATCGA
ACAAAAACACAACCTCGTACCCCAAATGGTTATGATTCAAGAATGGAGCA
AGGGAAAGTTGCTGCATTCGCAAACGCTTTGGGAGGAGCAGCTTTTCGTA
AAAAACCAGTCCTAGCCTCGAATTGGTGATCTTCAATAATAACTCTCGTT
CATTAGCAGTCAAACACaatttaaatttattgtaaatagAATATTATATC
atacattttttgtaaaataaacatatttttaaaaatatttttttcaggat
TATTTTGACCAGAACAAAACAAAGCAAATCGACATACCTTTTGGGTGAAG
GAAATTCTTTAAGGTGAGATTGATTGATCAAAACATACAACCTGAAGTAA
ATTAAGTTAAAGTTTTAACAGAGtaataattcttataaaaaagggccaaa
gttctcttttttttaatacCAGTATTTAAACAGAAAACCTTTATGACGTA
TATTAATATTTTTAAGTCAG Run BLAST on NCBI transcript from alignment at sc0000085:578068..584159- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008483 ID=TCONS_00008483|Name=TCONS_00008483|organism=Clytia hemisphaerica|type=transcript|length=6092bp|location=Sequence derived from alignment at sc0000085:578068..584159- (Clytia hemisphaerica)
GAGAATAAAAAACAACTTTGGTCTTTATAAATTATGGTGTGGATTGATAC
ACCAAGGAGGCAGTTCTGGGTTAGTAACTTTATGCAGTTGTCACAGTCAA
AAACATGTTTATATATTACGCTTCTTTTCCAGTCAGAAAAGAAATCGTTC
TGAAGCCATCATATTGGCTTTTCACACACACACACAGAACAAATTATTCT
AGTCAACGAAATGGCTTTATCGAACTTTTGAAATGGAAACAGAGCCGTAA
TGAAACCTCAAAGAGCTCTAAAAGTTTCCACTTTGGCAAACCTGTATAAC
AGGCAAAGCTAAAGGTTCATTCTAAGTTCATCTATACAGTTGATTATAGT
TGATAAAATTTGTGCTAAAAGAATTTAGGACAATATTAACGTTACTTTCC
AAAGATTTGTTACTTAATCTAAATATTCTTTCATTTTGTAGCCAAATGTG
AAGGAGCAAAAAGAGCCTGTACCTGGCTGGTTGATCACCAAGGTTGTCAA
ACAACCTCCACTCAAAGAAGAACACACTTCCATAGATGGCAAACGTGAAC
AAAATGGTAGCCCGTCACCACGCAACCAACGTAAACATAAACGTGTAATT
CACAGACCAGGTACACCTGAACAACAAAAGCAAAATACAGACCAGACAAA
TAATGAGGAGTCAGAGGAACGATCTTCATCCGTCTCCGACCGAATACGTC
AATTTTCTAACAGAAAAAAGAATGAAGTGTCGACACGCATCCAGACCCCT
GAGATCGAAGAAATATTACGTAATGTACGAAGCATCAATAAAACTCATCT
CAGTGATGACTCAGAAGAAACCACGAACGATGAAAATCTCCCGACAACGC
CCAAAGGGACGGGCAGCAAATGGCAGCCACCACAATTTCAAAAGACTAAT
AGCTATGACTCAAAACCAAGAGCGTTTATGGATGATACAGATTCTTCTAT
TTCCAGCACGCCCTCGCCGCCCTTGATAAATAATGACGAATTTTCAAACG
ATAGCTGTGATGGCTGCGATGTCAACAATAACTCGGGAAAGCAAAATGTA
GATAAAGCCTTAAACGCAGACATGACAAACCCCTCGACAAACAGTAACAT
TACACCTATAAAAACCATCAAAATCTCCAAAAAGACATTAGAGTTGAACG
TGAAACAGTTTACGCAGTATAACCGTGATCAGAAGAATGAGAATCGATCG
AACCTTACATCACATCATCATACTTCACTGAAACCCTTACAATTGAAGTT
CAATTTTACCGTACGAAAGAAAAAAGCGTATAAAGAAAAACAACAAACAC
GATCCTTAACTGACATTACAAACGGCGTTAATAACAAAATGGAAGCGCGG
CCGAGCGAAGAACAAATGTTAGCACCTAAACACAGGTGTAATGAGAGCTG
TGATATCGTAAATGGTGAATGCAAGGAAAAGAGAGATCAGACTATAGGTA
AGCGAACGACTGGACATACGAAACGAACTGTGATTAAACCACCGCGTATT
CAACATTATTCATTTTTATCGATTCCTGAAAGCACGTTATAACATCTCTT
AAATGGATTGACCCTTTTCACTCAGACTCTAACCACTAACACTGAACAGT
GATTTAAAATCTTCAAAGCTAACCAACTTTTGATTCTTAAAGAACATAAC
TTAACCCCTCGCTTGCAATTTGTCCAATCAACAATTCAGCAGGCTAAATG
TTGTTTTTAACTTTAAGGTGAACTTTGTTTTGTCATTTTGTGCAAGCCAT
AACAAGTACAATATTTTGATTCAACTAACACTCTGGACTTTTGATACCGA
GCCCTCCTTTGGTATAAGAGACTACTGAATAAGGGTCAATCCAACACAAA
TTGCTATTTTACAAAACTTGCAAACACACTCCGCATTTCCGCATTTAAGC
AATATTTTACACCACGCATACACACAACACAAACATATACACTAGCCAAT
CAGAATCTGAAAAATAGCACGCGACACGTGAAATCGCTTCCCTAAAGTTC
ATGACACTCAAGTATTTAAGGTTTGTTTTGGAAAAGACAATGGTTTAATG
GCTGGTCTTACCCTAAGTTCCTAATTAGAAATTTTTCGAATTTTCGAAAG
GTGACCAAATTGCGGGTCAACAAACGTCATTAGAGAACGATGGTGAAGTG
CATTTAGAGTGACAGTTGCCAGGAAGTGGGCTTAATATAGTACAGATCTC
CATCGTAGGGCTTTCAGACATTGAATCAGACGTTTGGTATTTTGAAAGTT
AAGTTTTGTAATATTTGTTTAAGGAAGGATTGAGAAGTAATTGATATGAT
AATTAACTTGACAGTGATGTTTATTCTGCAATACGTGGGTAGATTTAAAG
GTAATTTTGCAATTAGAGAATGAGCCTTTAGCGAAAGCCAAGTGTATTCA
TTAAGTCATAAGAGCTTGAGAAGTAGCTAAGACGAAATTGTTAACAGAGT
GAAGACTTGCAATTTTGGGATTTTCGCCTGTGGTAAGTTAAAAGTAAGCT
AAGAAATCTTTCAACTTTGAAGTTAGATGAATTGAAAAGGTTTAGAATTT
AAAGCAATATTTGAATACTTTCTACGAATACTTTGGTTCAACGAAATTCG
TTACATTTTTTCCATCAGATGTAAATATAATGACTTTATCTCGTGAGATA
AATACAACAAGTATACTTGAAGCACGATCAGATCCCCTCTCACTCACACA
CGTACCAAAAATCCCCACCGTTCATTTTTCATGACATTATGTGTGAAATT
TAATTTGTAAATAAAAAGATGAAGTTCTTATGAGAAACACAAAGGAAGCC
TTTGATGGTTGTAAACATGCAATATTTTCTCAATTTTAGTTTTTAAAAGG
GTGTGGCAATCGAAACATGCAATATTTTCTCAATTTCAGTTTTTAAAAGG
GTGTGGCAATCGAAACATGCAATATTTTCTCAATTTCAGTTTTTAAAAGG
GTGTGGCAATGGGCTTCCTTTATGGTTTTCACTGTATTCAAAGTTTTAAA
CTTCATATTTATCTGAGCAGAATTTATATATTAGAACTAAATAAATGGAA
TTTCATAAGAAAATAAGGTCTAAAATCTTTCTTTATACTTTTGGAATGTG
TTCAATGTTAAAAGTTTTGTTTGTAATGGAAAGAATTTGTGCTGTGTGAA
CTATCCCAAATATTTTGACCAAATTGAGTAAAAAAATTGAACCGAATAAA
TTGATAATTTATGCTAATTTATGTTAATCAAGTATTAGCAAAGACAAACC
GCAGTAAAAAAGAAATTGGCTTGACTTGAACCTCATCAAGAAATAATCTC
TATGTTTTGACTTGGGTTAATCTCCCCTTTATCATAAATAATCTGCCCGC
TATAGGCTATTGACTATTCAAATAATTCGATGTTTTTTTCTACTATGTGT
GATCTCTATAGCTCCTCATCATTAAGTTATGAAAAAAAGACAATAGCAAT
TTTTAATTCATGTTTGTATAAAATGTATATCAAAGTTTAGTATAGCCGCT
GTTCACGAAAAAAGTTTGACTAGCCTGTGTTCCAAAGTTCATTAGATTAG
AGGCTAAATGTTTTGAAAAGATAATATATCAAAGCGTTATCTGTCTATCA
AAGATTTAGAAATAATTAACATAATTTATGTTAGGTTTGTTATTCAGTAT
AATGGGTAAGACAAAATATGTTATCTATAGATAAGGTGCTAGATGAGATG
TCAAAGTGAGATGAACTGTTAGAGTGATGTTAACAACTCATGAAATTTAA
TCAGGGGGTTTTCAAAAAAAAAAGATTAAAGACTAAAGTTTCATCGAACA
TGTGACAAAAACAAACAACTTTTTTTTAAATGAGCATCCAACAGAAATCC
AACAAAACTCAACTGAATTTAGATGTACACGTTCTTTTTATTAGAACACC
TAAAATTTGGCTGAGCCCGGATGTGCTTATTTTTTTAGAAATTTTCAGCC
TAAAATGTTCTTAAATGCGTTCTTAATTTTTCAGACTACTCTAAATCGAC
AATATCATGCAAAATAAAGAGCACTTAAAATTGGTAAAATTTGGAAAATA
TCTGACTCTCGATTTTAGAAAATCCATCCCTAAGTTCAGTTAACACTGCC
TGAAAAGAGGAAACAATTGTAGTTTCTTGTATTTTTTTTTCAAAACTGAG
GCTGGGCATGTTCTTACGATGTTCTTAATTTTTCGACGAATTATGCTAGA
ACATATCTAAACGTCTATGCGTGTGAAATTTTTAGTGCCGTTCAAAAAAA
AAATTCAAACCTGTCTCATTGATCCAGTGTTCTCACTCTTTCAAATCAAT
TTTAGATTTCCAAATTTAACAAAAGCAATTTAAACAGTCATAAAGTTTCT
CCTATTAATTAATTACGAAATGGCCCATACTGTTTTAGCAAAAAAAGACA
GTCAAAAACTTGCTTTGGCACAATCAAAAATGGTAACGTAAAAATGAATG
TTTCCAGAGCCTTAACTGTGGTCTCAAAATTTTGAAACAAAATCTTCACA
ATTTTCAATTCACTGCAACTAAAAAAGTCAGTATGAGAATTAGCTTATAA
AATAAAACGTTTGTATCCCTTTTTGAGACAAGCGGGAAAGGCACTTTGAG
ACACTTAGAGAGCTTTAGGAGGATTTTATTCGACCTTATTATGTAATATG
AACTAAAATTCTTGCTTTCAGTCAATCTGGAAATCGAATTTTAATATTAT
TTACAAATTTCTGCATCTTTGATGAACTTATATACTTTATTCTTTAGAAT
CAGCTGACTCAGCGAAAATGGAACGTACGAACAACAAAAAGACAACCGTC
AAAATCATCTCACACAATAGTAACCATGGGAACAACAAATCGAACCGCAC
CAAGGTCTTCTTAACTACCAAAAAGTCGACCAGTAAAGATCACGGTACCG
AAAACGAGAAACAAGATTGTCGCTTGAATTCGGATAATTGCTCGTTCGAT
AGCGGATACTTCGGTACAAACTCGTCAATAACGAATACTACCGAAAATAA
AACGAATAGTCATCGTGAAGAAAACCAAGCTTCAAAAACAAAACAAACAA
AAACTCCCATAACTCCATCAGAAATCCATCCAGTTAAATATCGTTGTATA
CCGGTGTATCAACCGGAGTATGTGAAAACCGGAACAGTTCATACGAAGGA
AAATTTGGAAAAGATGGAGGAAAAAAATGGCGATTCTGCTAATCTTCATA
AAAAATGGGGAAGTCAAACGATCGAGCCTACTCAAGAACCATTCGATTAT
TTACCTCGATCAGCAGAATTTATAAAGAACATTAAAGAACAATTTCGACA
AGAAAGAGAGAAAAAGATCGAACAGTTGAAAAAAGACGCCGAACGCAAGC
CTCTTGTTATCGACTATCGACACGCTCGTAGCCAATCAGATTCGAACAAA
CACGTCCGAAGCCAATTAGATTCAAATAAGCATGGCTTTCACCAATCAGA
AGTAAACAACCAGTTTTCTCGTAGCCAATCAGAGACGCAAGACGAAGAAA
GACAGCCGGGGACAGAATTCAAAAGATCATTTTCTTTGAAACAATATCCA
ATAGAGCGGACATGTGTTGGTACACCAAGTCCGAAATTTCATCGCCGGGC
AACATACCATCCAACCAATCGAACAAAAACACAACCTCGTACCCCAAATG
GTTATGATTCAAGAATGGAGCAAGGGAAAGTTGCTGCATTCGCAAACGCT
TTGGGAGGAGCAGCTTTTCGTAAAAAACCAGTCCTAGCCTCGAATTGGTG
ATCTTCAATAATAACTCTCGTTCATTAGCAGTCAAACACAATTTAAATTT
ATTGTAAATAGAATATTATATCATACATTTTTTGTAAAATAAACATATTT
TTAAAAATATTTTTTTCAGGATTATTTTGACCAGAACAAAACAAAGCAAA
TCGACATACCTTTTGGGTGAAGGAAATTCTTTAAGGTGAGATTGATTGAT
CAAAACATACAACCTGAAGTAAATTAAGTTAAAGTTTTAACAGAGTAATA
ATTCTTATAAAAAAGGGCCAAAGTTCTCTTTTTTTTAATACCAGTATTTA
AACAGAAAACCTTTATGACGTATATTAATATTTTTAAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008483-exon-sc0000085-1575043694:584091..584159 | TCONS_00008483-exon-sc0000085-1575043694:584091..584159 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1575043694:582713..583718 | TCONS_00008483-exon-sc0000085-1575043694:582713..583718 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1575043694:578068..579412 | TCONS_00008483-exon-sc0000085-1575043694:578068..579412 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1510915933:584091..584159 | TCONS_00008483-exon-sc0000085-1510915933:584091..584159 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1510915933:582713..583718 | TCONS_00008483-exon-sc0000085-1510915933:582713..583718 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1510915933:578068..579412 | TCONS_00008483-exon-sc0000085-1510915933:578068..579412 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1491911889:584091..584159 | TCONS_00008483-exon-sc0000085-1491911889:584091..584159 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1491911889:582713..583718 | TCONS_00008483-exon-sc0000085-1491911889:582713..583718 | Clytia hemisphaerica | exon |
| TCONS_00008483-exon-sc0000085-1491911889:578068..579412 | TCONS_00008483-exon-sc0000085-1491911889:578068..579412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:578068..584159 - |
Blast
The following BLAST results are available for this feature:
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