TCONS_00008482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008482
Unique NameTCONS_00008482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008482 ID=TCONS_00008482|Name=TCONS_00008482|organism=Clytia hemisphaerica|type=transcript|length=843bp
TGGTGATGTGTCATAACAAATTCGCTGACCAAGCAATATTACGCAACTTT
TAAGCATTGCACAAATATACAATATTTTCTCGAAAAATCACTTCCACTTT
CCGCTACTCTTTAGCACCCAGTAAAAGAATTATAAGGAAACAgctcaaaa
agtaaaaacgtcgctgtaaaagaaaactttacCAAATTTAAAATGGTTCA
ACAGATCTGTATAGCTTGTGGCAACTTGATGTCAATGCGAGTTCGTTTTT
GTGAATGTGGCCATGTCTTGATGGAAAATGTTACCTTATCATcGACGAGA
CGGTTGCGAAGACATAATGAAAAGCGCATGCGTCAAGTGACATCATCACT
CAAATCGAAGCGATCACTGAATGccaataataaaacaatagaaGAGCGAG
AATTCTATCTTGGGCAAGCAAACCAGCTACAAATTGCTGAAAAAGGAAAG
AACCAATTGTCCATCAATCGTCCGATTACATCTCCGAGACCGAATAAAAG
ACAGATCCGAGAAGAAGAGTTCAAAAGGAAACTAGAAGCTTTGTTCGCTT
CTCCAATGTTCCAAAAACGTCTGAGCAACGCATTATCTTCCATTAACAAC
AAACTGTTAAAACAGCAACGTTTCTTTAAAGTCCTTGACGCTTCTGAGTA
TATGAAacgaagaaaacaaaacaaatcattCATTGGTTGAAAAGTTTCTC
GATTGAGATCAACATGGAGTCAGATGGCAAAGAAGAGTGAAAGAAGCAGC
ACACCAATTTCTCAGCAACCCTCTCCCAGGGAGGCCTCCCAGCGGACCTT
CTATTTGCGCAAtcatcacgcaatttttttcccaaatttacGC
Run BLAST on NCBI

protein sequence of TCONS_00008482-protein

>TCONS_00008482-protein ID=TCONS_00008482-protein|Name=TCONS_00008482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MVQQICIACGNLMSMRVRFCECGHVLMENVTLSSTRRLRRHNEKRMRQVT
SSLKSKRSLNANNKTIEEREFYLGQANQLQIAEKGKNQLSINRPITSPRP
NKRQIREEEFKRKLEALFASPMFQKRLSNALSSINNKLLKQQRFFKVLDA
SEYMKRRKQNKSFIG
Run BLAST on NCBI

transcript from alignment at sc0000085:542146..545354-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008482 ID=TCONS_00008482|Name=TCONS_00008482|organism=Clytia hemisphaerica|type=transcript|length=3209bp|location=Sequence derived from alignment at sc0000085:542146..545354- (Clytia hemisphaerica)
TGGTGATGTGTCATAACAAATTCGCTGACCAAGCAATATTACGCAACTTT
TAAGCATTGCACAAATATACAATATTTTCTCGAAAAATCACTTCCACTTT
CCGCTACTCTTTAGCACCCAGTAAAAGAATTATAAGGAAACAGCTCAAAA
AGTAAAAACGTCGCTGTAAAAGAAAACTTTACCAAATTTAAAATGGTTCA
ACAGATCTGTATAGCTTGTGGCAACTTGGTGAGTATAAAAATTAAAATAT
CGGTGTTTCCGTTTTTAGATCAAAGTTAATTTGTGATATTTTCGGATTTT
TTGTACATATTACTTAGATTGATTTTCTTGGGAATGTTATTATGTTATGT
TTTCGCTCAATTCCCAATTCTAATCTATCAATTCCTGTGTCTTACTGGCG
ACGTATGTTAAAATTTGATGGACAAATTCTTCCCAAACTTACAAAGGTTT
AACGATTTCCAAATCATAATAATTTCAAGGCCTCACTATCTAAATTTTCT
TATTAGATGTCAATGCGAGTTCGTTTTTGTGAATGTGGCCATGTCTTGAT
GGAAAATGTTACCTTATCATGTAAGTCGTTTGTTTTATCTTGCCAGAAAA
TATTGACATTCTTAAAACATCTTGTAAAAAAACTTTTTGTTGACAAAAAG
CTTGGCATGATCTACTTATATATACTGTTTCGTATTTCAATAACTTGATT
GAAACGCAGCCGTTTCATTGCACTCGGGTAAGTTATGGCATGTCTCAAAA
ACCTGAAAATTACCATAATTTTTGAAGGCCATTAGCCGGCAGAAAATGGG
GAAACCAATGATTTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATCATTAGAAGGATCATTTTGCAAAAAAAAAC
TTTTCGAAATTTTGCTTTCGTCAGCAGAAATCAACAAAATACGAAATTTT
GCAATAAAGTGCTGATGTCAGCAAAGTTTCAAAAATATTTTTTTAGCAAA
ATGATCCTTTTAATGATACGCAACTTCAGTCCAAATTTCATGCTTCTATC
TTTAGCCAAACTGGAGTTATTTAAAAAACAAGTTTTGCTGACGTCAGCAT
TTTTTAGTTTTTGCGGTTTTTCGCGAAAATAAGGGCGTAAACAATTAGGT
AACACCTCTACAGCGAAACTTCATCGTGGTACCTTTCGTAGCAAATCATT
GGTTTCCTCATTTTCTGCCGGCTAATGGCCTTCAAAAATTATGGTAATTT
TCAGGTTTTTGAGACATGCCATAACTTACCTGAGCAGCCGTTTCATTCTT
TCGACGTCATTTCTTTCTAGAAAAACTTTGTAAAACCCAGAGAGTAGTTT
TGTAGCCTTTTCCTTTGTTAATAAGACCCCTGTAGCTTTATGTTAAGCAA
TCTCATTTGTGAAAAAAGAAGTATTTAAAAAAAATTTAAGTATTTGGACC
CGGCTATATACCTCCTCCTTTCAAAAAATCGGAAATGTCACTGGTTATCC
GAGGTTGAGTTTTTTCTCTCTACTTTGATATTTCATCCTCTATTCAGCGC
TGCCCTCTAATGAGTCCTTGTGCATTATGACTTTTTCAAATTTGTATTGA
TGAAGTTAGAGCTATCAAAGGAAAACTTTTATCATTTTTTCAGTACGAGA
AGCCGGCAACAAAAACCTATTCACTTATCCCAGAGCTCTTAAAGAGGTTC
TTCATTAATTGATTATATATGTGCCAAGGTACCTTATCGGGGAAAACTTC
GTCGGGAAAAATTTTCGTCGGGGAAAAATTCGTCACTTGCTGGTAGTTGG
TAAACGCATTAAGGCCGGGGAAAATTTTCTTCGGGGAAAATATTCGTCAC
TTGTCCAAAATTTCGTCATTTTTCCCCGACGAAGTTTTCCCCGATAAGGT
ATGCCTGGAGATTTTACTTGATATTGATATTAGATAACAGAACATTTTAT
GATGCGTACTCTCTCTGATATCCTTATTGGCTTGTGTATCAATAATTCAC
AGAATGTTTTTGTTACGTTTTTTTATATATAGCGACGAGACGGTTGCGAA
GACATAATGAAAAGCGCATGCGTCAAGTGACATCATCACTCAAATCGAAG
CGATCACTGAATGCCAATAATAAAACAATAGAAGTAAGAATTCCTTTCCA
TTGCTGTTCATATGCAAGCTTAGACAGATTGAAAACTAAGTTATTCTTGC
CTCAAGTTGGATTTTCATCTTGCAGCCTGTGTAAAGAAACAAAAGACTCT
AAAGTATTTTCTTTGGGTATTTGTTAAATATTAAGCATTAAATACTAGTG
AGTTTTCAGGTGAATTTAGTTAAAGTGAAATCTTTCGGAGGTTCAAAATC
GCATAATTTAACACAAGCCAAAAAGAATCAGGTAATATAACTTGCTAAAA
GTTAGAACCCGGGAAAAATGTACACTTGAGTTATCATCTTTTAAAAGAAC
AAAATTATATAACCAGTACCTGTAGCATTAATAACAACTATGTCCATTAT
GATTTTCTAGATCTTTTAGATCTGCCAACTTTCATTCTCTATTCTTTTGA
ATTAAATAGGAGCGAGAATTCTATCTTGGGCAAGCAAACCAGCTACAAAT
TGCTGAAAAAGGAAAGAACCAATTGTCCATCAATCGTCCGATTACATCTC
CGAGACCGAATAAAAGACAGATCCGAGAAGAAGAGTTCAAAAGGAAACTA
GAAGCTTTGTTCGCTTCTCCAATGTTCCAAAAACGTCTGAGCAACGCATT
ATCTTCCATTAACAACAAACTGTTAAAACAGCAACGTTTCTTTAAAGTCC
TTGACGCTTCTGAGTATATGAAACGAAGAAAACAAAACAAATCATTCATT
GGTTGAAAAGTTTCTCGATTGAGATCAACATGGAGTCAGATGGCAAAGAA
GAGTGAAAGAAGCAGCACACCAATTTCTCAGCAACCCTCTCCCAGGGAGG
CCTCCCAGCGGACCTTCTATTTGCGCAATCATCACGCAATTTTTTTCCCA
AATTTACGC

Coding sequence (CDS) from alignment at sc0000085:542146..545354-

>TCONS_00008482 ID=TCONS_00008482|Name=TCONS_00008482|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000085:542146..545354- (Clytia hemisphaerica)
GAGCGAGAATTCTATCTTGGGCAAGCAAACCAGCTACAAATTGCTGAAAA
AGGAAAGAACCAATTGTCCATCAATCGTCCGATTACATCTCCGAGACCGA
ATAAAAGACAGATCCGAGAAGAAGAGTTCAAAAGGAAACTAGAAGCTTTG
TTCGCTTCTCCAATGTTCCAAAAACGTCTGAGCAACGCATTATCTTCCAT
TAACAACAAACTGTTAAAACAGCAACGTTTCTTTAAAGTCCTTGACGCTT
CTGAGTATATGAAACGAAGAAAACAAAACAAATCATTCATTGGTTGACGA
CGAGACGGTTGCGAAGACATAATGAAAAGCGCATGCGTCAAGTGACATCA
TCACTCAAATCGAAGCGATCACTGAATGCCAATAATAAAACAATAGAAAT
GTCAATGCGAGTTCGTTTTTGTGAATGTGGCCATGTCTTGATGGAAAATG
TTACCTTATCATATGGTTCAACAGATCTGTATAGCTTGTGGCAACTTGGA
GCGAGAATTCTATCTTGGGCAAGCAAACCAGCTACAAATTGCTGAAAAAG
GAAAGAACCAATTGTCCATCAATCGTCCGATTACATCTCCGAGACCGAAT
AAAAGACAGATCCGAGAAGAAGAGTTCAAAAGGAAACTAGAAGCTTTGTT
CGCTTCTCCAATGTTCCAAAAACGTCTGAGCAACGCATTATCTTCCATTA
ACAACAAACTGTTAAAACAGCAACGTTTCTTTAAAGTCCTTGACGCTTCT
GAGTATATGAAACGAAGAAAACAAAACAAATCATTCATTGGTTGACGACG
AGACGGTTGCGAAGACATAATGAAAAGCGCATGCGTCAAGTGACATCATC
ACTCAAATCGAAGCGATCACTGAATGCCAATAATAAAACAATAGAAATGT
CAATGCGAGTTCGTTTTTGTGAATGTGGCCATGTCTTGATGGAAAATGTT
ACCTTATCATATGGTTCAACAGATCTGTATAGCTTGTGGCAACTTGGAGC
GAGAATTCTATCTTGGGCAAGCAAACCAGCTACAAATTGCTGAAAAAGGA
AAGAACCAATTGTCCATCAATCGTCCGATTACATCTCCGAGACCGAATAA
AAGACAGATCCGAGAAGAAGAGTTCAAAAGGAAACTAGAAGCTTTGTTCG
CTTCTCCAATGTTCCAAAAACGTCTGAGCAACGCATTATCTTCCATTAAC
AACAAACTGTTAAAACAGCAACGTTTCTTTAAAGTCCTTGACGCTTCTGA
GTATATGAAACGAAGAAAACAAAACAAATCATTCATTGGTTGACGACGAG
ACGGTTGCGAAGACATAATGAAAAGCGCATGCGTCAAGTGACATCATCAC
TCAAATCGAAGCGATCACTGAATGCCAATAATAAAACAATAGAAATGTCA
ATGCGAGTTCGTTTTTGTGAATGTGGCCATGTCTTGATGGAAAATGTTAC
CTTATCATATGGTTCAACAGATCTGTATAGCTTGTGGCAACTTGGAGCGA
GAATTCTATCTTGGGCAAGCAAACCAGCTACAAATTGCTGAAAAAGGAAA
GAACCAATTGTCCATCAATCGTCCGATTACATCTCCGAGACCGAATAAAA
GACAGATCCGAGAAGAAGAGTTCAAAAGGAAACTAGAAGCTTTGTTCGCT
TCTCCAATGTTCCAAAAACGTCTGAGCAACGCATTATCTTCCATTAACAA
CAAACTGTTAAAACAGCAACGTTTCTTTAAAGTCCTTGACGCTTCTGAGT
ATATGAAACGAAGAAAACAAAACAAATCATTCATTGGTTGACGACGAGAC
GGTTGCGAAGACATAATGAAAAGCGCATGCGTCAAGTGACATCATCACTC
AAATCGAAGCGATCACTGAATGCCAATAATAAAACAATAGAAATGTCAAT
GCGAGTTCGTTTTTGTGAATGTGGCCATGTCTTGATGGAAAATGTTACCT
TATCATATGGTTCAACAGATCTGTATAGCTTGTGGCAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004737XLOC_004737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008482-exon-sc0000085-1575043694:545127..545354TCONS_00008482-exon-sc0000085-1575043694:545127..545354Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1575043694:544785..544848TCONS_00008482-exon-sc0000085-1575043694:544785..544848Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1575043694:543022..543122TCONS_00008482-exon-sc0000085-1575043694:543022..543122Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1575043694:542146..542595TCONS_00008482-exon-sc0000085-1575043694:542146..542595Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1510915933:545127..545354TCONS_00008482-exon-sc0000085-1510915933:545127..545354Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1510915933:544785..544848TCONS_00008482-exon-sc0000085-1510915933:544785..544848Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1510915933:543022..543122TCONS_00008482-exon-sc0000085-1510915933:543022..543122Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1510915933:542146..542595TCONS_00008482-exon-sc0000085-1510915933:542146..542595Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1491911889:545127..545354TCONS_00008482-exon-sc0000085-1491911889:545127..545354Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1491911889:544785..544848TCONS_00008482-exon-sc0000085-1491911889:544785..544848Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1491911889:543022..543122TCONS_00008482-exon-sc0000085-1491911889:543022..543122Clytia hemisphaericaexon
TCONS_00008482-exon-sc0000085-1491911889:542146..542595TCONS_00008482-exon-sc0000085-1491911889:542146..542595Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008482-proteinTCONS_00008482-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:542146..545354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.981023	1.31191	2.08636	3.16558	1.32035	4.90639	10.3749	1.41619	5.32193	4.56064	0.985029	1.09119	0.672126	1.85144	16.8938	26.0815	2.32647	2.05842	0.705771	1.51662	2.46329	4.61134	58.0849	60.6795	1.11797	0.696079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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