TCONS_00008479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008479
Unique NameTCONS_00008479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008479 ID=TCONS_00008479|Name=TCONS_00008479|organism=Clytia hemisphaerica|type=transcript|length=1414bp
tattgaaaaagaaaatattaaaaaatcaagttgcTGAATGAACCTTGTAA
AGCCAATACAATGTTCACTACAGTAAtcaaaaaagtcaagaaaagTTTTA
GTACTCTAAACCATTGAATGTCTGGTTGTTTTGATGAAGAAATGATTAAT
TAATATTTTATCAGCAGGATTACATTGATGGATCAATGAAAAATAGCCCA
GTGCATCCTTAATTTGAGCCATGGAGTTGTTGGTGGTCAGTATAGGGAAT
CATAAATTTGATGCAAACCTTATTGTTATTATAAATACTTGTTATGGTAT
ATCAATTTTCGCATTATTATTTACACTgactgttttttatttgaatcttg
aGCAATTGAGTTCTTCAAAACAGTCAATGAATCACCCAAGGTAGAAAGCG
AATGTAAAATTGTATATCTATTTAATGTCAATGCAAATTTTGTTGCTAGC
GTGTATATTGATATTTATCAATTTGAGGTCTGAAAATCCTGGCATTTGTG
CCACTCTTCAGATACTAATTGTTTATCTTTCACtaatgtttcattttatg
tatttttcaaTGTTACTGAGGGCGTACATTGCTACTAAAAACCCTTGGAA
AGCCCGTACGCAAGGAACTATTACCAGAAAATTCAGCTTAGTTGTAATTA
TACCGTCTTCTTTGGTTGTTTTGTTTATCCTTGAATGCTACTACACAAAC
CATAAACAATGGAGTTGTACAATGTTTGATCGTTTCTATATCcgatttgt
tgttctttttattatGGGTGGAACCGTATTTACTGGATTTACCGCAGGAA
CTGCTATGTTGATTATTCGAATCAACAGCTTAAAGgaagtgaattttaga
tttCAGCAGATGGTCAAACAACTAGTACTGGCAAACCAAATTCGGAATAT
TTACAGTCTTTCCATTATACTTACAGTATTACTTGGGATGAACATACATT
TCTTGAAAGACAGGGATATATCCCAATATGTGGTGATGGACGGCATATTT
CATCTCTTCTTGGGATTCCATTTCATACTTTTTGAGTGGTGGTTTCATAA
CGAGGAAATGAGAAAACCATTCAAATGGCAACGTCAAAAAGATGTCCGAG
AAATcgctatgaaaaataaaaacaaacgaaTCATAACGGACACCTCTGTG
ACTGTGACCAGTACAGTCACTTCTAATTTGACTATGATGTAAAGGTCAAT
CCCAATTTGAATGCCATCAGACCTATATGGAATCTACATTTTAACaaatt
tgacatatttttttttaaatcattttgtaAGATGCATAGGGTAGTAGAAT
ATATTTGGAAAGgccttggagagggaatgtgcGAGGGCACTAAAGGTAAG
CGACCTGCGTAGGGAGGAACTTTGAATTCAGAATTACAATTGTGACCCTA
ATTACATGTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000085:429277..432862-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008479 ID=TCONS_00008479|Name=TCONS_00008479|organism=Clytia hemisphaerica|type=transcript|length=3586bp|location=Sequence derived from alignment at sc0000085:429277..432862- (Clytia hemisphaerica)
TATTGAAAAAGAAAATATTAAAAAATCAAGTTGCTGAATGAACCTTGTAA
AGCCAATACAATGTTCACTACAGTAATCAAAAAAGTCAAGAAAAGTTTTA
GTACTCTAAACCATTGAATGTCTGGTTGTTTTGATGAAGAAATGATTAAT
TAATATTTTATCAGCAGGATTACATTGATGGATCAATGAAAAATAGCCCA
GTGCATCCTTAATTTGAGCCATGGAGTTGTTGGTGGTCAGTATAGGGAAT
CATAAATTTGATGCAAACCTTATTGTTATTATAAATACTTGTTATGGTAT
ATCAATTTTCGCATTATTATTTACACTGACTGTTTTTTATTTGAATCTTG
AGCAATTGAGTTCTTCAAAACAGTCAATGAATCACCCAAGGTAGAAAGCG
AATGTAAAATTGTATATCTATTTAATGTCAATGCAAATTTTGTTGCTAGC
GTGTATATTGATATTTATCAATTTGAGGTCTGAAAATCCTGGCATTTGTG
CCACTCTTCAGATACTAATTGTTTATCTTTCACTAATGTTTCATTTTATG
TATTTTTCAATGTTACTGAGGGCGTACATTGCTACTAAAAACCCTTGGAA
AGCCCGTACGCAAGGAACTATTACCAGAAAATTCAGCTTAGTTGTAATTA
TACCGTCTTCTTTGGTTGTTTTGTTTATCCTTGAATGCTACTACACAAAC
CATAAACAATGGAGTTGTACAATGTTTGATCGTTTCTATATCCGATTTGT
TGTTCTTTTTATTATGGGTGGAACCGTATTTACTGGATTTACCGCAGGAA
CTGCTATGTTGATTATTCGAATCAACAGCTTAAAGGAAGTGAATTTTAGA
TTTCAGCAGATGGTCAAACAACTAGTACTGGCAAACCAAATTCGGAATAT
TTACAGTCTTTCCATTATACTTACAGTATTACTTGGGATGAACATACATT
TCTTGAAAGACAGGGATATATCCCAATATGTGGTGATGGACGGCATATTT
CATCTCTTCTTGGTATGGAAATAATTTTTAACACCCCTGTCTCACAGGGC
CGGTGGACCTTTTTTCCTCAGTGGGGATAAAAACTCCTATTGAAATCCCA
ATGGGGATAGAAATTCTATTGTTCCAAGGTTAAAAAATCAAGTGGGGATG
GGTATGGAGTGCAATTTTTAAACATTGAATTTCGAATGGGGATGAAATCA
AAGTAAAAACTCCGGGTATTTTCCCAACGGGGACGAATTTTTTGCCAAAT
TTTCCAGTGGGTCTGGGGTCCCAGCGGGTCTGTGAAACAGGGGTGTTTTT
TAAACTTGCAAAGAATATATACCAGAATCCTAGGGGGGGCACTCAAGGTA
AACGACCTATCGTTCGTTCGGCCCTAAAAGGTCATTTTCCAGGGTTCACA
AAGTGCACTGTAAGGGTCGAAATGAGCAAAGATGAGAAAAAATGCACTCT
AAAGGTGTAAAATTTGGAAAATCTGGCCATATTTTGCCTTATTATATATC
TACATAGTTCAGCTCTTTCTTACTCTATGGTATTAAACCCTGAAATACAT
AAATAAAGATCGCTGACATGCCTTAAATGGAGATTTGTATGTCAAATAAA
CTACCACTCGTACTCCACCCATCATTATTTTCAATCTTTCTGCATGGGGT
TCTAATTCATTTTTTATCCCATTTCAGGGATTCCATTTCATACTTTTTGA
GTGGTGGTTTCATAACGAGGTAAGCAAAGATCAGGTTTATGACCTATAAT
TGCTAGATGTGATTTTGAAATTTTGATTTATCAACACGTTTTTTGCTTGT
AACTATTTGCTTGTGATCATGATACAAGAAGTATCGAAACGTCAAGAATG
AACAAAATTTTGTTTTTCGTCTTTACTTTTTTGTTGAGAATAATCTGGCC
CAGAAGAAAATTTTTTAAAGATAAGAATGTATGAAACTCCTCATTATTGT
ATGGATTTATTATTAGGGATTTTTCTAAGCACTTTTTTATGTCCGCATAC
CAGCCAAAGATGCTAATCAAAAATTAACCCCTGTTTTGTGACATTTTTCA
TGTCATCCACTATTTTGCTCATAGAATGAGGCCATCATGTGGCTTACATG
TCAAAATACATCCATGGTTAAGCTGAATAATTTATCTACCTGTTGCAAAA
AGAACAAATTTTGTGGCTTACTCAACTTAAATATATTAAAGCATTAAGTG
TGAGTAAAATATGTGGCTGACAAAAAAGCCACAAAAAAGTACATTTAACA
ACGCAAAAGTACTGTATGTACATTTAACACTTTTTGGAAAATTCAGCCTT
TCTTCTTTCAAGTCAAGAAGGTCCCATTCAGAGATCACTTTTCAATATCG
TGTGGCTTACACTTTAAAAAAAACTAGAATTTTTGAACTGCAGCCACAAT
TTTGACTCAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAATCTCTAT
GGCTGACTCAAAACATATGAAGAGTTATTCCAAAAAGTTGATTTTGAGCA
TTTTTTACAATGTCACACTATTTTTGATTAGCATCCAAAATATTCAATCT
ATGAGTTTTTGAAACTCAATTCAAAATAAATGAGATATTTTCTAGCGAAA
TTGACGAAATTTTTTTGTTGGTTATTAGCAACAATAACTAATTATAATCT
ACATATTCAAGAGTTTTTGAGAGCTTTGCCCTCTGAACATCTCAAGACCC
CCAGCTTCATCAATGCACAGCTTTGCTGAGAAAATTCCTTTTCAGGCATA
TTAGAAATTCAATCTAAGTTTACAAAAACGGCCTGATTATGACTTAAAGT
TGCTCAATTTCCTTTCTTATTCTTGGGAAAAAATCTGTTGCTTGAACAAA
GAAATTCGATCTTTATTTCAATCATTCGAAACTATAGTGAGGAATTAGGA
ATTCAGTTTAAAGATATTGGCTATAGATTTCACTGAATTTCGTCCAAGAC
AGCATGAAACTGCCAGTAGGAAAAATTCTAAGAAGCCAAAAGAAACTTTA
TCTGTAAAACCTGTTTTTCTTTATTCTAGTAAACTGTATATTTTCTCAAA
CAAATTCATTATTCAAATCTTTTCAGGAAATGAGAAAACCATTCAAATGG
CAACGTCAAAAAGATGTCCGAGAAATCGCTATGAAAAATAAAAACAAACG
AATCATAACGGACACCTCTGTGACTGTGACCAGTACAGTCACTTCTAATT
TGACTATGATGTAAAGGTCAATCCCAATTTGAATGCCATCAGACCTATAT
GGAATCTACATTTTAACAAATTTGACATATTTTTTTTTAAATCATTTTGT
AAGATGCATAGGGTAGTAGAATATATTTGGAAAGGCCTTGGAGAGGGAAT
GTGCGAGGGCACTAAAGGTAAGCGACCTGCGTAGGGAGGAACTTTGAATT
CAGAATTACAATTGTGACCCTAATTACATGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004735XLOC_004735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008479-exon-sc0000085-1575043694:431851..432862TCONS_00008479-exon-sc0000085-1575043694:431851..432862Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1575043694:431144..431185TCONS_00008479-exon-sc0000085-1575043694:431144..431185Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1575043694:429277..429636TCONS_00008479-exon-sc0000085-1575043694:429277..429636Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1510915933:431851..432862TCONS_00008479-exon-sc0000085-1510915933:431851..432862Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1510915933:431144..431185TCONS_00008479-exon-sc0000085-1510915933:431144..431185Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1510915933:429277..429636TCONS_00008479-exon-sc0000085-1510915933:429277..429636Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1491911889:431851..432862TCONS_00008479-exon-sc0000085-1491911889:431851..432862Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1491911889:431144..431185TCONS_00008479-exon-sc0000085-1491911889:431144..431185Clytia hemisphaericaexon
TCONS_00008479-exon-sc0000085-1491911889:429277..429636TCONS_00008479-exon-sc0000085-1491911889:429277..429636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:429277..432862 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.917528	2.33189	0.692581	0.338791	1.88632	0.723989	6.30519	7.58808	3.60155	3.40951	2.29682	1.76262	1.06372	1.00013	1.38761	1.80004	1.1051	1.4272	1.23586	1.47559	0.591412	1.16633	3.36175	4.24047	1.32765	1.60807	1.35581	0.895128	6.31575	8.62319
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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