TCONS_00008477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008477
Unique NameTCONS_00008477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008477 ID=TCONS_00008477|Name=TCONS_00008477|organism=Clytia hemisphaerica|type=transcript|length=468bp
GATACAAGAAGTATCGAAACGTCaagaatgaacaaaattttgtttttcgt
ctTTACTTTTTTGTTGAGAATAATCTGGcccagaagaaaattttttaaag
ataagaATGAAATGAGAAAACCATTCAAATGGCAACGTCAAAAAGATGTC
CGAGAAATcgctatgaaaaataaaaacaaacgaaTCATAACGGACACCTC
TGTGACTGTGACCAGTACAGTCACTTCTAATTTGACTATGATGTAAAGGT
CAATCCCAATTTGAATGCCATCAGACCTATATGGAATCTACATTTTAACa
aatttgacatatttttttttaaatcattttgtaAGATGCATAGGGTAGTA
GAATATATTTGGAAAGgccttggagagggaatgtgcGAGGGCACTAAAGG
TAAGCGACCTGCGTAGGGAGGAACTTTGAATTCAGAATTACAATTGTGAC
CCTAATTACATGTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000085:429277..431042-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008477 ID=TCONS_00008477|Name=TCONS_00008477|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at sc0000085:429277..431042- (Clytia hemisphaerica)
GATACAAGAAGTATCGAAACGTCAAGAATGAACAAAATTTTGTTTTTCGT
CTTTACTTTTTTGTTGAGAATAATCTGGCCCAGAAGAAAATTTTTTAAAG
ATAAGAATGTATGAAACTCCTCATTATTGTATGGATTTATTATTAGGGAT
TTTTCTAAGCACTTTTTTATGTCCGCATACCAGCCAAAGATGCTAATCAA
AAATTAACCCCTGTTTTGTGACATTTTTCATGTCATCCACTATTTTGCTC
ATAGAATGAGGCCATCATGTGGCTTACATGTCAAAATACATCCATGGTTA
AGCTGAATAATTTATCTACCTGTTGCAAAAAGAACAAATTTTGTGGCTTA
CTCAACTTAAATATATTAAAGCATTAAGTGTGAGTAAAATATGTGGCTGA
CAAAAAAGCCACAAAAAAGTACATTTAACAACGCAAAAGTACTGTATGTA
CATTTAACACTTTTTGGAAAATTCAGCCTTTCTTCTTTCAAGTCAAGAAG
GTCCCATTCAGAGATCACTTTTCAATATCGTGTGGCTTACACTTTAAAAA
AAACTAGAATTTTTGAACTGCAGCCACAATTTTGACTCAAATAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGTGAAATCTCTATGGCTGACTCAAAACATATGA
AGAGTTATTCCAAAAAGTTGATTTTGAGCATTTTTTACAATGTCACACTA
TTTTTGATTAGCATCCAAAATATTCAATCTATGAGTTTTTGAAACTCAAT
TCAAAATAAATGAGATATTTTCTAGCGAAATTGACGAAATTTTTTTGTTG
GTTATTAGCAACAATAACTAATTATAATCTACATATTCAAGAGTTTTTGA
GAGCTTTGCCCTCTGAACATCTCAAGACCCCCAGCTTCATCAATGCACAG
CTTTGCTGAGAAAATTCCTTTTCAGGCATATTAGAAATTCAATCTAAGTT
TACAAAAACGGCCTGATTATGACTTAAAGTTGCTCAATTTCCTTTCTTAT
TCTTGGGAAAAAATCTGTTGCTTGAACAAAGAAATTCGATCTTTATTTCA
ATCATTCGAAACTATAGTGAGGAATTAGGAATTCAGTTTAAAGATATTGG
CTATAGATTTCACTGAATTTCGTCCAAGACAGCATGAAACTGCCAGTAGG
AAAAATTCTAAGAAGCCAAAAGAAACTTTATCTGTAAAACCTGTTTTTCT
TTATTCTAGTAAACTGTATATTTTCTCAAACAAATTCATTATTCAAATCT
TTTCAGGAAATGAGAAAACCATTCAAATGGCAACGTCAAAAAGATGTCCG
AGAAATCGCTATGAAAAATAAAAACAAACGAATCATAACGGACACCTCTG
TGACTGTGACCAGTACAGTCACTTCTAATTTGACTATGATGTAAAGGTCA
ATCCCAATTTGAATGCCATCAGACCTATATGGAATCTACATTTTAACAAA
TTTGACATATTTTTTTTTAAATCATTTTGTAAGATGCATAGGGTAGTAGA
ATATATTTGGAAAGGCCTTGGAGAGGGAATGTGCGAGGGCACTAAAGGTA
AGCGACCTGCGTAGGGAGGAACTTTGAATTCAGAATTACAATTGTGACCC
TAATTACATGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004735XLOC_004735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008477-exon-sc0000085-1575043694:430935..431042TCONS_00008477-exon-sc0000085-1575043694:430935..431042Clytia hemisphaericaexon
TCONS_00008477-exon-sc0000085-1575043694:429277..429636TCONS_00008477-exon-sc0000085-1575043694:429277..429636Clytia hemisphaericaexon
TCONS_00008477-exon-sc0000085-1510915933:430935..431042TCONS_00008477-exon-sc0000085-1510915933:430935..431042Clytia hemisphaericaexon
TCONS_00008477-exon-sc0000085-1510915933:429277..429636TCONS_00008477-exon-sc0000085-1510915933:429277..429636Clytia hemisphaericaexon
TCONS_00008477-exon-sc0000085-1491911889:430935..431042TCONS_00008477-exon-sc0000085-1491911889:430935..431042Clytia hemisphaericaexon
TCONS_00008477-exon-sc0000085-1491911889:429277..429636TCONS_00008477-exon-sc0000085-1491911889:429277..429636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:429277..431042 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.368461	0.504896	0.694597	0.841399	2.50829	0.604551	0.351838	0.803153	0.673707	0	0	0.101128	0.334902	0.455779	0	0.389833	0	0	0.657103	0.905845	0.238722	0.193798	1.47878	1.6895	0	0	0.829464	0.427956	0.567163	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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