TCONS_00008472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008472
Unique NameTCONS_00008472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1181

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008472 ID=TCONS_00008472|Name=TCONS_00008472|organism=Clytia hemisphaerica|type=transcript|length=1181bp
ATCTTTCAATTCATTTGGAACAATATTGGACTCGATTAACAACACTTTAT
AAAAAACTATCGAAATGAATAATTACAGTTCAGGCGGATCCAAAGACTCT
ACATTTCGTCCTGAGCATGATAATACCAAAAGAAGTGCTGAAGTCTACAT
CTTTCTATCGACGCTCGAAGTCATGAAAAATACTGTTTATGAATCATGGG
ATAACTTCAAACATTGGGCTCTCATTTTTTTATTCGATAGCAGAAGATTG
AAATATGAATTGAATAATCCTAGTGGCCAAAAAACTGGAGGAAAAATCGA
GCCTTCATGGGATGATTTTCATGGTGTTggtaCGTTCGAGAAGATGATTT
TTTTGGGTACCATTACAACTTCCCCTAAAGACATCAACGAAGCCGCGAAA
AACAATCGTTTGAACGGCCAAACGTACCATGCAAGCAAAAGAAATTGCCA
AGACTGGGTGATCGAGCTCCTAAATACGATTGATCCGTCAAAAAGTTTAT
TTCGCTCattgaaagaagaagaaatcgtCCCTTTAAAAGATTCAATCTCA
AAATTCCTTGTTGACTCTGCTTGTAAATCGGACAAGCTTAAATCAATTTC
TTCTTCACGAAGATGAGGTGAAGAAGATAGAAAAAAGTACTACGCAAAGA
ATGAAGATTAGACTACAAAGAACGCTATACATTTATTCTACGAAACATAA
CACTGGGATGGACCTAGTTCTTTAGGTTTTTTACGCGATAGGATATGCTA
GGATAAATTTtgttgccccgcaggggcttttgttgcttcacgtagcggac
ctgctcgccagaaaaatattcatattcataTTCATATTCAGATTCATGTT
TCGtccgattctgagcgggccgcgcgcggttaaaaaatgttcgcgcgCGA
TATCTATTTTGCTGCTACTTGTATTGATTTCCTAGCTATGCACGGACAGA
GAAGGTAGCTTCCCGTCTGCACTGCCAGTCCACACAGCTAAaagctttca
caaacaacaaacagcacacaagattttatttttgcttggttaatatcttt
ttaacgtagttggtcaactggatttacttgagggacattgtttgctactg
aatgaataactatcaaactactgatattagATCAAACCTTATACAATTGT
CAGAATGGACGATGGACATCTTTAATGACAG
Run BLAST on NCBI

protein sequence of TCONS_00008472-protein

>TCONS_00008472-protein ID=TCONS_00008472-protein|Name=TCONS_00008472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MNNYSSGGSKDSTFRPEHDNTKRSAEVYIFLSTLEVMKNTVYESWDNFKH
WALIFLFDSRRLKYELNNPSGQKTGGKIEPSWDDFHGVGTFEKMIFLGTI
TTSPKDINEAAKNNRLNGQTYHASKRNCQDWVIELLNTIDPSKSLFRSLK
EEEIVPLKDSISKFLVDSACKSDKLKSISSSRR
Run BLAST on NCBI

transcript from alignment at sc0000085:377023..381009-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008472 ID=TCONS_00008472|Name=TCONS_00008472|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at sc0000085:377023..381009- (Clytia hemisphaerica)
ATCTTTCAATTCATTTGGAACAATATTGGACTCGATTAACAACACTTTAT
AAAAAACTATCGAAATGAATAATTACAGTTCAGGCGGATCCAAAGACTCT
ACATTTCGTCCTGAGCATGATAATACCAAAAGAAGTGCTGAAGTCTACAT
CTTTCTATCGACGCTCGAAGTCATGAAAAATACTGTTTATGAATCATGGG
ATAACTTCAAACATTGGGCTCTCATTTTTTTATTCGATAGCAGAAGATTG
AAATATGAATTGAATAATCCTAGTGGCCAAAAAACTGGAGGAAAAATCGA
GCCTTCATGGGATGATTTTCATGGTGTTGGTAAGAAAAAAAATACTATAA
GAAAAGCTAAGGTTTTTATACCCCCTTTATTCGTGTACGAACCTTTTAAT
AAATTTTGTTGTATGAAAACTTTTGATACCAAATTCGGAATAAGGGGGTA
TACCGAATAGCAGAGCGTCGTTCATGAGAGCTTCTTTTGATTGTTGACGG
CGGCTTTCAATTTTATCGAATGATAGAGCTAATCGAACGGCATCGATAGG
TCATTGTTTGATTTTTCGCTCAGTCACGTCAAATGTTTTTCTTTTTTAAA
GGTACGTTCGAGAAGATGATTTTTTTGGGTACCATTACAACTTCCCCTAA
AGACATCAACGAAGCCGCGAAAAACAATCGTTTGAACGGCCAAACGTACC
ATGCAAGCAAAAGAAATTGCCAAGACTGGGTGATCGAGCTCCTAAATACG
ATTGATCCGTCAAAAAGTTTATTTCGCTCATTGAAAGAAGAAGAAATCGT
CCCTTTAAAAGATTCAATCTCAAAATTCCTTGTTGACTGTGAGTGCTAAG
ATTACTACTTCTAATCTATGCTTCTTTTTATAAGCAGCTCCATTTTTTAG
GCCACGGCTTGAGTTGATTAGCATTGGGCTCTTCCAGAAAATGTTCGTAC
ACCCCGGGTGGAGAATGGCTTAACTGGTCACTGAAAATTAGAAAACTTTC
AATAAATTTTAATAAACGGGGGGTAAATATAGGCTAAAATCACGGTATTT
AGAGCAAAATAAAGGACCTTCTCTTTGAAAGCTGAAATCAATAAACGGGG
GGATTCTAATAAGGTCCGGGGGGAGGGGTTTGGAAAATTTTCGAAAAATT
AAAAAGCGTGGGGCCCGTTTATTTGGCACCTAAGAGTACACGTTTTTTTT
AAGAAACTAGTTTTACCAAGCAACATTTCTTAAGAAATCGGCCTTTTGAG
CCTTACATGTTTCTTACATTCTAAACTTTTTGACATAATCAGCCTATTTT
TCATACAAAGAAAAAAAAACTGTTTTAATTAGAAGGTTCTTAAAAAAACA
GAATTAATTTTTTTTTTTCAGCCTCAGTTTGTTTCTTAGTTTTTAGGCAT
TCTGAGCCTCATGTCTCTTAAAAGTGTGTTTCTTAAAATAAAAAAAAAAA
GTGTAATTTTAGGTAACCAGGTTGCTTATAAAAATGTGTGTCACAGATAT
GAAACTCTTGGATGGGAAATTTAGCGACTTATTTCCGTGAAACGCATGAC
CTGAGTGATTTTCACACCAACGTCGGAATGGAATTTAAGGGCTCTGACCA
TAGTCAAAAGATCGGTTGTAAGATTTGAAGAAAAAACTTGTGTTTTGAGT
TCCTTTACACCTTAAAAAACTGTCTTTTTATACGCTTACGGGAACTTATT
TTGGCGGGAACTAATTTTGACGAGTGGCAAAAATCCTGAAAATTTTTAAT
TTTAGCGAGAACTTATATTTTGGCGAGTGAGCAAAATAGGCGCGCCAAAA
TGAGTCCCCTTAAAGTAAGTTTTTTGTGAATTTATTCTTTAAAAGTAATT
AGCAATTTCATTACAAAAATGACGTAATGAACCTTAAAAGACGTTAATAA
AATGCTAGATTAATCTATTTTACAAAAAGTGATAGGTTTTAAATGGGTAA
CAAACCTTTTTGTTTCAAATTTTTTTTAAATTGTCTGCAAAAAAATTGAA
AAGTTATGACTCTTTTTGTAAGAAAAATCGGGATGAAAAATTGGTCAAAA
AGCACTATTTTTAAGATTTCGAGACAAAGAAGCTTTTGCAAAAATTTTCC
GAAAATTTGTTTTGGTTAAAGATACAGCGTAGTGCATCCGTGTATGAAAA
CGTCCATTCGATTTTTGGTCAATTTTCAATATTTTAGTGACGTGGTGGTA
TTACAAAAAAAGCCTAAAAGCATTTTAGTACCATGTGTACTAAAATCCCA
AATTAGGTGGGGTCTTCAAGAAATGTAAGAAGAAATATGAAAAAACATGA
AAAATCACCAAATTTTAGGAAATTTAACTATTGACCATGCATTTTGGGCA
ACTTTGCCCCAACAATACTAAAAGATTTCAGTAAAGTGCCAAATTTTTTC
TTGAGGTAAGTATTGCATGCTAGATTTTGGCTGGGTTTGTATCCAAATCT
GAGAATACNTTTAGGAAATTTAACTATTGACTGAGCATTTTAGGCAAAAT
GAAAAAATAAAAACTCTCTATATAAGATTTAAATACGTCCCTGTGTCACA
AATTAAGCAAAACTTTTGTCCCCGGTGGTAAAATACCCTTGAATTTCAGC
CCCATTGGGAAATTGACTTTGATTTCATCCCCACTCAAAATTCCATGTTT
AAAAATTGCACTCCAAAACCATATCCCCACTGGGTTTTTAACCTTGGAGC
AATATAATTTCTATCCCCATTAGCATTTCAATAGGAAATTTTATCTCAAC
TGAGGAAAAAGGTTCCTCTGGCTGCCTCTGGGGTTGTGAAACACCCATGT
TTCAATTTAATTGTTCTGCTTTTATATAATATGGAATAAAAAGTTCGAAG
TTGAATGCTTTGTTTTTTGTAAAGAACCGTGGATAACTGGATAGAAAAGA
AATAGGAAGCTGTAAATTAGAGGTGAAAAACCCGTGAAAAATAACCAATC
AATCTTTGCAATAACTAATAAAGTAGAGCAGAGCAAAAGTGTCTTGACTG
TTTCTGAGTCTTTATCTAGAATAGATAGAGATAGATCAGGTTCATTGACA
GCTTAAACAACCAGAGTTGGCATTTTGTTGAAAGTCCAAAGACCCGCATT
CTTCGAACCGAATTCCAAAATAAGCCTTATTTAGGTGGTCACTATGCTAA
AATGTCAAAATAAATTTTAGTACATGTGTACTAAAATTCCTTTTTCAAAA
ATTAGGTGGGGGTATGTCAAAAATCGTCAAAAAACCTTGTAGTACTCATT
ATATGTCTTGGATTTTAGTACCGACCCCCCCCCTAGATTCAGGAATAGTT
CATAGCATAGTTTTGTTGGTTACATCAGTCAGAAATATTACTTAATAATT
TTTTTTTTCTTGCTTGTTTCAGCTGCTTGTAAATCGGACAAGCTTAAATC
AATTTCTTCTTCACGAAGATGAGGTGAAGAAGATAGAAAAAAGTACTACG
CAAAGAATGAAGATTAGACTACAAAGAACGCTATACATTTATTCTACGAA
ACATAACACTGGGATGGACCTAGTTCTTTAGGTTTTTTACGCGATAGGAT
ATGCTAGGATAAATTTTGTTGCCCCGCAGGGGCTTTTGTTGCTTCACGTA
GCGGACCTGCTCGCCAGAAAAATATTCATATTCATATTCATATTCAGATT
CATGTTTCGTCCGATTCTGAGCGGGCCGCGCGCGGTTAAAAAATGTTCGC
GCGCGATATCTATTTTGCTGCTACTTGTATTGATTTCCTAGCTATGCACG
GACAGAGAAGGTAGCTTCCCGTCTGCACTGCCAGTCCACACAGCTAAAAG
CTTTCACAAACAACAAACAGCACACAAGATTTTATTTTTGCTTGGTTAAT
ATCTTTTTAACGTAGTTGGTCAACTGGATTTACTTGAGGGACATTGTTTG
CTACTGAATGAATAACTATCAAACTACTGATATTAGATCAAACCTTATAC
AATTGTCAGAATGGACGATGGACATCTTTAATGACAG

Coding sequence (CDS) from alignment at sc0000085:377023..381009-

>TCONS_00008472 ID=TCONS_00008472|Name=TCONS_00008472|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0000085:377023..381009- (Clytia hemisphaerica)
CTGCTTGTAAATCGGACAAGCTTAAATCAATTTCTTCTTCACGAAGATGA
GTACGTTCGAGAAGATGATTTTTTTGGGTACCATTACAACTTCCCCTAAA
GACATCAACGAAGCCGCGAAAAACAATCGTTTGAACGGCCAAACGTACCA
TGCAAGCAAAAGAAATTGCCAAGACTGGGTGATCGAGCTCCTAAATACGA
TTGATCCGTCAAAAAGTTTATTTCGCTCATTGAAAGAAGAAGAAATCGTC
CCTTTAAAAGATTCAATCTCAAAATTCCTTGTTGACTATGAATAATTACA
GTTCAGGCGGATCCAAAGACTCTACATTTCGTCCTGAGCATGATAATACC
AAAAGAAGTGCTGAAGTCTACATCTTTCTATCGACGCTCGAAGTCATGAA
AAATACTGTTTATGAATCATGGGATAACTTCAAACATTGGGCTCTCATTT
TTTTATTCGATAGCAGAAGATTGAAATATGAATTGAATAATCCTAGTGGC
CAAAAAACTGGAGGAAAAATCGAGCCTTCATGGGATGATTTTCATGGTGT
TGCTGCTTGTAAATCGGACAAGCTTAAATCAATTTCTTCTTCACGAAGAT
GAGTACGTTCGAGAAGATGATTTTTTTGGGTACCATTACAACTTCCCCTA
AAGACATCAACGAAGCCGCGAAAAACAATCGTTTGAACGGCCAAACGTAC
CATGCAAGCAAAAGAAATTGCCAAGACTGGGTGATCGAGCTCCTAAATAC
GATTGATCCGTCAAAAAGTTTATTTCGCTCATTGAAAGAAGAAGAAATCG
TCCCTTTAAAAGATTCAATCTCAAAATTCCTTGTTGACTATGAATAATTA
CAGTTCAGGCGGATCCAAAGACTCTACATTTCGTCCTGAGCATGATAATA
CCAAAAGAAGTGCTGAAGTCTACATCTTTCTATCGACGCTCGAAGTCATG
AAAAATACTGTTTATGAATCATGGGATAACTTCAAACATTGGGCTCTCAT
TTTTTTATTCGATAGCAGAAGATTGAAATATGAATTGAATAATCCTAGTG
GCCAAAAAACTGGAGGAAAAATCGAGCCTTCATGGGATGATTTTCATGGT
GTTGCTGCTTGTAAATCGGACAAGCTTAAATCAATTTCTTCTTCACGAAG
ATGAGTACGTTCGAGAAGATGATTTTTTTGGGTACCATTACAACTTCCCC
TAAAGACATCAACGAAGCCGCGAAAAACAATCGTTTGAACGGCCAAACGT
ACCATGCAAGCAAAAGAAATTGCCAAGACTGGGTGATCGAGCTCCTAAAT
ACGATTGATCCGTCAAAAAGTTTATTTCGCTCATTGAAAGAAGAAGAAAT
CGTCCCTTTAAAAGATTCAATCTCAAAATTCCTTGTTGACTATGAATAAT
TACAGTTCAGGCGGATCCAAAGACTCTACATTTCGTCCTGAGCATGATAA
TACCAAAAGAAGTGCTGAAGTCTACATCTTTCTATCGACGCTCGAAGTCA
TGAAAAATACTGTTTATGAATCATGGGATAACTTCAAACATTGGGCTCTC
ATTTTTTTATTCGATAGCAGAAGATTGAAATATGAATTGAATAATCCTAG
TGGCCAAAAAACTGGAGGAAAAATCGAGCCTTCATGGGATGATTTTCATG
GTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004731XLOC_004731Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008472-proteinTCONS_00008472-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008472-exon-sc0000085-1575043694:380681..381009TCONS_00008472-exon-sc0000085-1575043694:380681..381009Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1575043694:380172..380408TCONS_00008472-exon-sc0000085-1575043694:380172..380408Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1575043694:377023..377637TCONS_00008472-exon-sc0000085-1575043694:377023..377637Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1510915933:380681..381009TCONS_00008472-exon-sc0000085-1510915933:380681..381009Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1510915933:380172..380408TCONS_00008472-exon-sc0000085-1510915933:380172..380408Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1510915933:377023..377637TCONS_00008472-exon-sc0000085-1510915933:377023..377637Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1491911889:380681..381009TCONS_00008472-exon-sc0000085-1491911889:380681..381009Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1491911889:380172..380408TCONS_00008472-exon-sc0000085-1491911889:380172..380408Clytia hemisphaericaexon
TCONS_00008472-exon-sc0000085-1491911889:377023..377637TCONS_00008472-exon-sc0000085-1491911889:377023..377637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:377023..381009 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93597	1.39037	2.73539	3.2465	6.0543	5.05735	3.85514	5.36272	9.92757	64.1956	15.5987	30.167	59.3515	54.7049	25.3254	15.7901	6.93225	8.45374	17.994	19.1394	2.59637	3.56609	6.11499	4.27876	13.2282	14.1996	19.8598	22.113	4.86623	5.01244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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