TCONS_00008440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008440
Unique NameTCONS_00008440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008440 ID=TCONS_00008440|Name=TCONS_00008440|organism=Clytia hemisphaerica|type=transcript|length=1224bp
TATAAGCTCCTTTAAAGTGATATACAAACTTTGGTATCATTTCAGAGAAA
ACTAATATTAATACTACtataaaaatgtcattttgCTTAAAGGGAAAAGT
TGCTTTGATCACAGGGGCAAGCTCAGGTATTGGAAGAGGTACAGCTCTCT
ATTTCGCAAAGAATGGAGCCAGATTAGCCATCGCTGGAAGAAAGGAAGAC
AATTTAAAAGCAGTTGCAAAAGAATGTGAAGAAATTAATCCAAATAAAGA
AAAGGTGTTGTCAGTAGTTGGTGATTTAAGCAAGGAAGATGCCACAGAGA
GAACTATGAACGAAACAATGGATCACTTCAAACAGTTGGATATCTTGGTG
AATTCTGCAGGAATAGTGATGAATGGTACAGCAGAATCAACTCCTCTTCA
AGATTACGATTTACAAATGAACATCAACGTCCGgtcaattttttatttga
cgaaATTGGCCATCCCTCATTTGATTAGAAGTAAAGGAAATATTGTGAAT
GTATCAAGTGTTACAGGATTACGTTCGTTCCCTGGTGCTTCAACATAATT
GCATGTCAAAAGCAGCAATTGATCAATACACAAGAACAACAGCTTTGGAG
CTTGCACCACACCAAGTCAGATGTAATGCAGTCAATCCTGGAGTCATTGT
AACACAACTCCATAGAAGAGCTGGAATGTCGGAAGAGGACTACCAGAAGT
TTCTAATAAAATGTCAGTCAACACATGCATTGGGACGTGCTGGCAATGTT
GATGAAGTAGCATCGGTCATTGCATTCCTGGCTTCAGATAGTGCTTCGTT
CGTCACTGGTGCAACCATTCCTGTGGATGGTGGAAGACATGCTATGTGTC
CAAGATGAGGAGCATTTGAAGATTTGTTTgtacaaaatgaaaaagtgaCA
TATTTCTTCTTGAGGAAGCTGCAAAGCTTCCAATTCGAGTACTTTTATTA
ATTTGTAGGAGGTGGACTGTTTCGACATATTTCTTCTTGAGGGAGCTTGA
AACTTTTAAGTTCAAGtactttattgattttgtagaaGTGAATTATGGAT
GTGACTCAATGGCTCAAGGAACCTAAATTGGGAGAATTTTTGGAGACGAA
ATTTTAATGTTTCATATTATTGAAGCTATAGTTTTTTATGTAAtatgtag
tttttttttttaattttgataatttatttAAAGATTTGACATTGGAaaat
aaacaatagaaaaataaactagAA
Run BLAST on NCBI

transcript from alignment at sc0000085:89302..93227-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008440 ID=TCONS_00008440|Name=TCONS_00008440|organism=Clytia hemisphaerica|type=transcript|length=3926bp|location=Sequence derived from alignment at sc0000085:89302..93227- (Clytia hemisphaerica)
TATAAGCTCCTTTAAAGTGATATACAAACTTTGGTATCATTTCAGAGAAA
ACTAATATTAATACTACTATAAAAATGTCATTTTGCTTAAAGGGAAAAGT
TGCTTTGATCACAGGTAATAATTTATAATTTTTAAACGTTACTTTTTTCT
GATTTTCTAATACAATGAATTGAATTGAAATATCTCGGTTACTCCTTTTC
TTCCGAATTTACACCATTTCAGGGGCAAGCTCAGGTATTGGAAGAGGTAC
AGCTCTCTATTTCGCAAAGAATGGAGCCAGATTAGCCATCGCTGGAAGAA
AGGAAGACAATTTAAAAGCAGTTGCAAAAGAATGTGAAGAAATTAATCCA
AATAAAGAAAAGGTATTGGACGGAAAAGAGTAATATAAATAGGTCGAAGG
GCCTCTAATTGATTTATATTTAGCTGCCAATGGTCAAAAAGTAATTTCGA
CATTGGACCTTTAACTTCGATGTCAGCAATTTGATCTGTTTGTTATTGAA
TGTCTCATGGGTGAATGAAATTTTTTAAATAAAATTATTTACAGGTGTTG
TCAGTAGTTGGTGATTTAAGCAAGGAAGATGCCACAGAGAGAACTATGAA
CGAAACAATGGATCACTTCAAACAGTTGGATATCTTGGTAAGATTTTCGT
TCGTTTACAAAAGTAACAACCATTAGAAGGCGAAGTTACACGCAAGAAAG
ATATCAGTTTTAGCTCCTTGTTGACTAAAGGCCAAGGTAAACGATTCCAA
CATTCCATCCAACATGCCATTTTCTCTCTGTTGGACAAAATGTTGGAATC
GTTTACTCGAATGCAAAACTCGGAAAGGAAGAAAAAATTATGTTGGAAGA
AGAAAAAAAGTGTTGGATGGGAGTTTGATCGCAATCAAACATTTTGTCCG
ACATTTACTTCTTTTTTTCGTGTTGGATCATGTTGGATTCGTTTACTCAG
CTCACATTCAACATTTGAAAGGGAATGACGTCATTAGAAAGAGAATCGAA
TGTTTTTTTGTCAAAAATTCGAAAAATCTCGTAACAAATTTAAAAAGATG
GTAGAGAAGCTACTAGCTCGAATGTTGTTTTTTTCGGAAAATAGACCAAG
GGGCACTGAAATTAAGCGATCTATCGTAGAGGTGTGACCCTTTAAAGGTA
CGTTTTTCAGGCTTCCCAAAATACACTGTAAGTGTGTAAAAAATGAGAAC
ATAGTTTCTGTTACAAAATTTTCGAAAATTTGACCATTTTTTGCCTTGAA
ATAGATAGATAAACTTCAAGAAATTGCACCATAAGAGTCGATTTTTCGCC
AGAATTTTCTCTGCATTGTAAGGGTCCAATTGTTAGACTATAATTTTTGT
CCGCATGAACAGCAGTAGTGGCACTTGTTACACTGGGTATAAAAATCCTA
GCCATTTCTAATTTGAAAAGAATGAATTAAAAAAAGAATGAATGAACACC
TATGTTGCGATGAAAACGATGTTGGACAATGTAGGTAAACGATTTTTAGG
AGATCCAACATCATTCCTAAATTCATCCAACATTTGTCCAACATTTCAAT
TTCTATGTTGGATGAAATGTTGGAATCGTTTACCTCGGCCTTAAACCAAC
TAACTAAGTTTTTCGACTTTAAAAGCTTTCCGATAGTCGAATCTTCCAAA
GTGATGTAGATTCTAGGGGGGGGGGCGTACGGGTTTGACGGTGTAACGGT
ATTAACCCTTTTTTCTATCGGTGTTTCGGTGTTTGAAGAAAAAAGTGACG
GTATTTCGGTGTCAAACATGCCATGCGGTGACAAAATTAAGGAATTTACC
AAACTTTGCTGTCGGTGTTGACGGTAATCCAAGAAATATGCGTCGGTATT
TCGGTGTCTGCGACCCCCGTACGCCCCCCTCTTCTAGTTACCTTTGATGA
ATTAAGTTGATTGGAGCAAAATTTGATCGAATTCATAGCAAAGCTTAAGA
TCTCTTTGAAAAGACTTAATCTTCCTTTCAGGTGAATTCTGCAGGAATAG
TGATGAATGGTACAGCAGAATCAACTCCTCTTCAAGATTACGATTTACAA
ATGAACATCAACGTCCGGTATCAGTTTTTCATTGTATAGTGAAAGTGAAA
GTTATTATTTTTTACTTTTTTTTAAAGCTATAAATAATCCGATTGAGGGG
CTAAGATATGGAAGAACTTGCTGCTGGCGGGAGTCAATGGTTATTTTCTA
TTTTCTATTGGACATCATTACAGGCAAAGTGATTAATCGATCTTCTAACT
CTCTCACTTCATTCCATTTCAGGTCAATTTTTTATTTGACGAAATTGGCC
ATCCCTCATTTGATTAGAAGTAAAGGTATCAAAACTGCCAAAAATCTTCC
ATCTTACTCAGTTCACGAGTCTTATCGTCTACGAGAAAAAACTTGGACCG
ATGGTTTAAAAACGATTGTTTTCTTCTTCAGGAAATATTGTGAATGTATC
AAGTGTTACAGGATTACGTTCGGTGAGAAATTTAACATTTCCTTCAAAGC
AAAGCACTGAATCGCACGAATCCTTAATATCTGTGCATGTTCACAAAAAA
GTAACCTTCAAATGTTAAGATTACAAATGCGAATAACATTTGATAGAGTT
TGAATGATATTGCTATTTTGTACCCATTGAAAAGATCATCGTGGATGGAA
TATTATCATGTGGCATTTTTGGAGTGATCCAAATTTCTTCACTTTCAGTT
CTCTTTCAGTTTTGATTCTCCTCGTGAATCTTTTTTTTTGAATGAGCACA
AAATCCCAGACTAACCCGCACTAAATTATTCGTCGCATTTGTTATTTGAA
TGACAGCTGTACTTTAGTCTAATATTATGTTATACCAGGTTATGCATGAT
GTTAACGATTGAAGTCAGATTTTTACCTAATACAAATTTTGTTAAATTTT
TATCAGTTCCCTGGTGCTTCAACATAATTGCATGTCAAAAGCAGCAATTG
ATCAATACACAAGAACAACAGCTTTGGAGCTTGCACCACACCAAGTCAGA
TGTAATGCAGTCAATCCTGGAGTCATTGTAACACAACTCCATAGAAGAGC
TGGAATGTCGGAAGAGGACTACCAGAAGGTTTGTCGAAATGTGTCGAAAA
AAACTTGACACTGTCTTCTCAGAAATTAGTATGGATTTTAAGTAAAACAA
ACTTTTGATGAAGACTTAGTTGCATTAGCTTACCTCTGTTGCATAAGTAC
AGTAATCAAAATTTTTATTTCTTTGACATTACAGCATTGACCAAAATCAG
TAATTTCAGAATTGGCTTTTACGGAGACTGTAATATTCAAAACAATAGAA
CCACCATCGTTATTTTCACGAGGATAAGAAAACAAAAATTCAAAACTGCA
TTACGAGGATAGGGATCAAGTTAATTTTTTTCATTCTCCATTTTATTGCA
GTTTCTAATAAAATGTCAGTCAACACATGCATTGGGACGTGCTGGCAATG
TTGATGAAGTAGCATCGGTCATTGCATTCCTGGCTTCAGATAGTGCTTCG
TTCGTCACTGGTGCAACCATTCCTGTGGATGGTGGAAGACATGCTATGTG
TCCAAGATGAGGAGCATTTGAAGATTTGTTTGTACAAAATGAAAAAGTGA
CATATTTCTTCTTGAGGAAGCTGCAAAGCTTCCAATTCGAGTACTTTTAT
TAATTTGTAGGAGGTGGACTGTTTCGACATATTTCTTCTTGAGGGAGCTT
GAAACTTTTAAGTTCAAGTACTTTATTGATTTTGTAGAAGTGAATTATGG
ATGTGACTCAATGGCTCAAGGAACCTAAATTGGGAGAATTTTTGGAGACG
AAATTTTAATGTTTCATATTATTGAAGCTATAGTTTTTTATGTAATATGT
AGTTTTTTTTTTTAATTTTGATAATTTATTTAAAGATTTGACATTGGAAA
ATAAACAATAGAAAAATAAACTAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004727XLOC_004727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008440-exon-sc0000085-1575043694:93114..93227TCONS_00008440-exon-sc0000085-1575043694:93114..93227Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1575043694:92866..93005TCONS_00008440-exon-sc0000085-1575043694:92866..93005Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1575043694:92591..92683TCONS_00008440-exon-sc0000085-1575043694:92591..92683Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1575043694:91161..91246TCONS_00008440-exon-sc0000085-1575043694:91161..91246Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1575043694:90903..90955TCONS_00008440-exon-sc0000085-1575043694:90903..90955Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1575043694:90756..90796TCONS_00008440-exon-sc0000085-1575043694:90756..90796Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1575043694:90150..90321TCONS_00008440-exon-sc0000085-1575043694:90150..90321Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1575043694:89302..89826TCONS_00008440-exon-sc0000085-1575043694:89302..89826Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:93114..93227TCONS_00008440-exon-sc0000085-1510915933:93114..93227Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:92866..93005TCONS_00008440-exon-sc0000085-1510915933:92866..93005Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:92591..92683TCONS_00008440-exon-sc0000085-1510915933:92591..92683Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:91161..91246TCONS_00008440-exon-sc0000085-1510915933:91161..91246Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:90903..90955TCONS_00008440-exon-sc0000085-1510915933:90903..90955Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:90756..90796TCONS_00008440-exon-sc0000085-1510915933:90756..90796Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:90150..90321TCONS_00008440-exon-sc0000085-1510915933:90150..90321Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1510915933:89302..89826TCONS_00008440-exon-sc0000085-1510915933:89302..89826Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:93114..93227TCONS_00008440-exon-sc0000085-1491911889:93114..93227Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:92866..93005TCONS_00008440-exon-sc0000085-1491911889:92866..93005Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:92591..92683TCONS_00008440-exon-sc0000085-1491911889:92591..92683Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:91161..91246TCONS_00008440-exon-sc0000085-1491911889:91161..91246Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:90903..90955TCONS_00008440-exon-sc0000085-1491911889:90903..90955Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:90756..90796TCONS_00008440-exon-sc0000085-1491911889:90756..90796Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:90150..90321TCONS_00008440-exon-sc0000085-1491911889:90150..90321Clytia hemisphaericaexon
TCONS_00008440-exon-sc0000085-1491911889:89302..89826TCONS_00008440-exon-sc0000085-1491911889:89302..89826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:89302..93227 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.5892	30.3848	20.7984	18.8881	6.9679	4.6724	9.55895	7.95682	11.6211	10.3835	8.73868	13.3037	6.80394	7.14997	10.0637	12.8789	14.892	15.6874	4.42064	5.62835	7.09456	9.26376	19.9875	18.4416	7.26555	7.40425	14.0797	10.4558	9.29034	9.56492
Blast
[Close]
BLAST of TCONS_00008440 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.934e-28
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:  550 CMSKAAIDQYTRTTALELAPHQVRCNAVNPGVIVTQLHRRAGMSEEDYQKFLIKCQSTHALGRAGNVDEVASVIAFLASDSASFVTGATIPVDGGRHA 843
            C +K A+D  T+  ALEL PH++R NAVNP V++T +  +A  S+    K ++   +   LG+   V+ V + I FL SD +   TG+T+PV+GG  A
Sbjct:  150 CSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMG-QATWSDPHKAKTML---NRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWA 243

HSP 2 Score: 70.8626 bits (172), Expect = 1.934e-28
Identity = 47/153 (30.72%), Postives = 73/153 (47.71%), Query Frame = 3 
Query:   75 MSFCLKGKVALITGASSGIGRGTALYFAKNGARLAIAGRKEDNLKAVAKECEEINPNKEKVLSVVGDLSKEDATERTMNETMDHFKQLDILVNSAGIVMNGTAESTPLQDYDLQMNINVRSIFYLTKLAIPHLIRS--KGNIVNVSSVTGLRS 527
            M   L G+  L+TGA  GIGRGT       GAR+    R + +L ++ +EC  I P       V  DL   +ATER +         +D+LVN+A + +         + +D    +N+R++  ++++    LI     G IVNVSS    R+
Sbjct:    1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEP-------VCVDLGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA 142
The following BLAST results are available for this feature:
BLAST of TCONS_00008440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCXR1.934e-2839.80L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
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