TCONS_00008439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008439
Unique NameTCONS_00008439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008439 ID=TCONS_00008439|Name=TCONS_00008439|organism=Clytia hemisphaerica|type=transcript|length=749bp
CAAAATTGGATGATCAGAAGATGAGTGGGGAAAATGTTTTGGAACATGAA
CAGAAAATGTTGCATTTGGAAGTCCTCAAAACGCTCAAGCCGAAATTATC
ACAACTTGAAACATTGAAAGCGAAGATTTTATGTGAAGTTGAACGTTGCT
TGAAAGAAATCTCTACCAGTGAAGAATGTGAGAGAGAAATTCATATTTTG
GAAATGGAGAAAAGATTACATGAAGAAGCTATCAAAAATCTCGATAAAGA
TATTAACGAGTTGAAAACATCGGTGTCACAATCAAAAGTGGAACAAGATA
TCCTGAAATCGCATGCAAAACAACTCGTTGATGAATTCAATCCACTGAAA
CGAGAAGTGAATGAGATTCGTACATCCATTGGACTTGATACCTTGCCCGA
CCTAACGGAAGTTGACGTCAtactgaaaaagaagaaatgatTTTGATGTC
GGTATCATTGTTGGGTTTCACGGAGAACTATATTCTTACGGAGAATGGTA
GAGAAGAAACATTGGAAACACTTAAGAAAAAAGACGATGAAAGTCACAAC
CGGCGTCACTTTGGCTTGGCTTTCTACAATGCAATAATGATGGACCTCGG
AAAGTCTGCTAAGTAAAAAACAATTGATAAAATTCTTTCATTCATGGGAA
AAGATCAAGGTAATAACAGTCTTCTTTACTTGACTATATGATAAAGAACA
TTTGATATTTTCGTTGGAAAGTTGTATACATATTGAAGAAGGAAACATG
Run BLAST on NCBI

protein sequence of TCONS_00008439-protein

>TCONS_00008439-protein ID=TCONS_00008439-protein|Name=TCONS_00008439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
KLDDQKMSGENVLEHEQKMLHLEVLKTLKPKLSQLETLKAKILCEVERCL
KEISTSEECEREIHILEMEKRLHEEAIKNLDKDINELKTSVSQSKVEQDI
LKSHAKQLVDEFNPLKREVNEIRTSIGLDTLPDLTEVDVILKKKK
Run BLAST on NCBI

transcript from alignment at sc0000085:84721..89171-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008439 ID=TCONS_00008439|Name=TCONS_00008439|organism=Clytia hemisphaerica|type=transcript|length=4451bp|location=Sequence derived from alignment at sc0000085:84721..89171- (Clytia hemisphaerica)
CAAAATTGGATGATCAGAAGATGAGTGGGGAAAATGTTTTGGAACATGAA
CAGAAAATGTTGCATTTGGAAGTCCTCAAAACGCTCAAGTAAGTCAAGNA
AAATTGGATAATCAGAAGATGAGTGGGGAAAATGTTTTGGAACATGAACA
GAAAATGTTGCATTTGGAAGTCCTCAAAACGCTCAAGTAAGTCAAGTCCT
TCCTTGAATGTCAAACAATGTTCATTTAACGTTCTCAACACGTCCATAAA
ACGTTGGATGAAAGATAAAACAAGGTTGTGTGTAAGCTCGATTTATGTGA
ATAGGGGAAGAAGGAAGCTTTGTTTTTCGTAGATTCGTCAGATTCTTCAA
TGATTTTTATTTATACACTTAAAGTTGAGCAGGTGTCAGAGGCTATTGTT
TGACATGAAACGAGAATATACTAAGCACTACACTGCAAAATAGCGCATGC
ACAGCACATGCGTCAGTTAATGCACAGTGAGTAAAATGAAATATTTTAAG
TGTACAAACTTTCGTGAGTAGAAACTTTCGCGATTTTCGTGAATTTTGGC
CTTTTTCGCGAAAGTAAATTCGTTTGAAAATTCTTAACAAGGTGATTCGC
GAAAGTTTTTGCTCGCGAAAAATTTTTAAAAAGTTGAAAATCTATGGAGC
TTCGACATCCTGCTAAAAAAAATTAATTGTAACATTTTTATGCCTTAAGA
GCGTTATTGATGTCATAGAATACCAGTTTGAATCAGATTTAATAAGTATT
TGTCACTTTCAAGCCTTTTTTTGGATTAAAATTTTCATTTTGATTACCCA
ATTCGCGAAAATAAATGTCGTACATTTCGCGAATTTTCGACCCCGCGAAA
GTCTGTACGCCTAAAGTATTCTTGGGGTTTATTTTTATCTTTACTTTTAA
AGAGATAAATTTGTTTATACTTTCCTCTCCATCTTCATCAGGCCGAAATT
ATCACAACTTGAAACATTGAAAGCGAAGATTTTATGTGAAGTTGAACGTT
GCTTGAAAGAAATCTCTACCAGTGAAGAATGTGAGAGAGAAATTCATATT
TTGGAAATGGAGAAAAGATTACATGAAGAAGCTATCAAAAATCTCGATAA
AGATATTAACGAGGTATGCAAAATGAGGCTTACTCTTGTCTTCCGAATAG
ACGCCCCCCCCCGCTAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
CGCCTCACCTGACGGAAACTTACAGCTTGACTGCTCACTTATTAAGGCCG
CTACCCACTCAGTATTTTATGGTCGGCGAACAAGGCGTACAGCTCGGGCG
CTTTGGTCGCAGAACGCTTTTCCCATTCCACTGATCAATAGTCGAACGTG
CGCAACGCACTGGGCTCAACTTCAGTGGCTTCAAATTATTCATAGGCCCA
ATTGTAGACCCCCAGATATTTACGCAATGAACAAGTGTGTCAAATTTCAA
CCAAATCCGACCATTTTGGAGGCCTGTAGGCTGCTTCAAAGCTTTAGCCT
CGTTTTGGCAAAAAAATCGTCCCTAGGCCCCAAAAATCTAAATTTTTGAA
AAATGCAAAAAATACCCCCAGATATTCACCCAAGGAACAAGTGTGCAAAA
TTTTAGCCAAATCAAACAATTTTTGAAGTCTCCAGGCTGCCCCAGAGTTT
TAGCCTCGTTTTGGCGAAAAACTCGTCCCCAGGCCCCAAAAATCAAAATT
TTCAAAACATGAAAAAAAACACCACCAGATATTCACCCAAGGAACAAGTG
TGCAAAATTTTAGCCAAATCAAACAATTTTTGAAGTCTCCAGGCTGCCCC
AGAGTTTTAGCCTCGTTTTGGCGAAAAACTCGTCCCCAGGCCCCAAAAAT
CAAAATTTTCAAAAAACGAAAAAAAACACCACCAGATATTCACCCAAGGA
ACAAGTGTGCAAAATTTCAGCCAGATCGAACAATTTTTGAAGTCTTCAGG
CTGCCCCAAAATATTAGCCTCGTTTTGGCGAAAAACTCGTCCCCAGGCCC
TAAAAATCAAAATTTTTGAAAAATGAAAAAAACTCCCCCAGATATTTACC
CAAGGAACAAGTGTGCAAAATTTCAGCCAAATCGAACAATTTTTAAAGTC
TCCAAGCTGCCCCAAAGTTTTAGCCTCGTTTTGGCGAAAAACTCGTCCCC
CGGCCCTCAAAATCAAAATTTTTGAAAAATGAAAAAAACCCCCCCAGATA
TTCACCCAAGGAACAAGGGTGCAAAATTTCAGCCAGATCGAACAATTTTT
GAAGTCTTCAGGCTGCCCCAAAATATTAACCTCGTTTTGGCGAAAAACTC
GTCCCCCGGCCCTCAAAATCAAAATTTTTGAAAAATGAAAAAAACCCCCC
CAGATATTCACCCAAGGAACAAGGGTGCAAAATTTCAGCCAGATCGAACA
ATTTTTGAAGTCTTCAGGCTGCCCCAAAATATTAACCTCGTTTTGGCGAA
AAACTCGTCCCCCGGCCCTCAAAATCAAAATTTTTGAAAAATGAAAAAAA
CCCCCCCAGATATTCACCCAAGGAACAAGGGTGCAAAATTTCAGCCAGAT
CGAACAATTTTTGAAGTCTTCAGGCTGCCCCAAAATATTAACCTCGTTTT
GGCGAAAAACTCGTCCCCCGGCCCTCAAAATCAAAATTTTTGAAAAATGA
AAAAAACCCCCCCAGATATTCACCCAAGGAACAAGGGTGCAAAATTTCAG
CCAGATCGAACAATTTTTGAAGTCTTCAGGCTGCCCCAAAATATTAACCT
CGTTTTGGCGAAAAACTCGTCCCCCGGCCCTCAAAATCAAAATTTTTGAA
AAATGAAAAAAACTCCCCCAGATATTTACCCAAGGAATAAGTGTGCAAAA
TTTCAGCCAAATCGAACAGTTTTTGAAGTCTCCAGGCTGCCCCAAAGTTT
TGGGACATACACACACACAGACAGACACACACACACACATTGTCAGATTC
TAACTCAACTGAAGTTGAGAAAAATAAAGGGGAGATATGCTGCATTTTCT
TTTTTCTATTGTTGATATCTTTTTGCACACGGTACAAGAGAGTTAAATGT
CTCTTCTGATCGGCTATTTAAAAAAGAACAATAGGGAAGCCGCACAGCCT
AGCGAAAAAAGTTGAAAAGTTTCAACTCTTGTTGCACTCAAGGCGACAGC
CTTGGAAGGCTTGATTTATGTAATTTATGCAATAGTTAAGCCGCGCGCCT
TGTTCGACGACCATAAAATGCTGAGTGGGTAGCGACCTTTAGAATTCTAT
TCGGGAGACAAGAGTAAGTATGGCGTTCTAAATCTGATTGACACGACTTC
GTAATTTCTCACTTTAAAACCTGAAAACCTTTGGTATATATTAGTATTTC
AATAATTGTACTCGATTTTGTGAGCTGAAGGGTATGTGACGCCCGACCTC
CATTTGCCTAAGTATCCTCCCGGGCAATTATATTTCCAGATTTATCTCTC
TTCTTACACCAGGGCTATATTTTCTTCTAGAAATAAAAATTGACAAGCTT
TTTGGCCAGTTCTTATAAAAGTTTAATAGTTTCTCATTTTCGATCTGCCT
CCTCATTTTCAGTTGAAAACATCGGTGTCACAATCAAAAGTGGAACAAGA
TATCCTGAAATCGCATGCAAAACAACTCGTTGATGAATTCAATCCACTGA
AACGAGAAGTGAATGAGATTCGTACATCCATTGGACTTGATACCTTGCCC
GACCTAACGGAAGTTGACGTCATACTGAAAAAGAAGAAATGATTTTGATG
TCGGTATCATTGTTGGGTTTCACGGAGAACTATATTCTTACGGAGAATGG
TAGAGAAGAAACATTGGAAACACTTAAGAAAAAAGACGATGAAAGTCACA
ACCGGCGTCACTTTGGCTTGGCTTTCTACAATGCAATAATGATGGACCTC
GGAAAGTCTGCTAAGTAAAAAACAATTGATAAAATTCTTTCATTCATGGG
AAAAGATCAAGGTAATAACAGTCTTCTTTACTTGACTATATGATAAAGAA
CATTTGATATTTTCGTTGGAAAGTTGTATACATATTGAAGAAGGAAACAT
G

Coding sequence (CDS) from alignment at sc0000085:84721..89171-

>TCONS_00008439 ID=TCONS_00008439|Name=TCONS_00008439|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000085:84721..89171- (Clytia hemisphaerica)
TTGAAAACATCGGTGTCACAATCAAAAGTGGAACAAGATATCCTGAAATC
GCATGCAAAACAACTCGTTGATGAATTCAATCCACTGAAACGAGAAGTGA
ATGAGATTCGTACATCCATTGGACTTGATACCTTGCCCGACCTAACGGAA
GTTGACGTCATACTGAAAAAGAAGAAATGAGCCGAAATTATCACAACTTG
AAACATTGAAAGCGAAGATTTTATGTGAAGTTGAACGTTGCTTGAAAGAA
ATCTCTACCAGTGAAGAATGTGAGAGAGAAATTCATATTTTGGAAATGGA
GAAAAGATTACATGAAGAAGCTATCAAAAATCTCGATAAAGATATTAACG
AGATGAACAGAAAATGTTGCATTTGGAAGTCCTCAAAACGCTCAAAAATT
GGATGATCAGAAGATGAGTGGGGAAAATGTTTTGGAACTTGAAAACATCG
GTGTCACAATCAAAAGTGGAACAAGATATCCTGAAATCGCATGCAAAACA
ACTCGTTGATGAATTCAATCCACTGAAACGAGAAGTGAATGAGATTCGTA
CATCCATTGGACTTGATACCTTGCCCGACCTAACGGAAGTTGACGTCATA
CTGAAAAAGAAGAAATGAGCCGAAATTATCACAACTTGAAACATTGAAAG
CGAAGATTTTATGTGAAGTTGAACGTTGCTTGAAAGAAATCTCTACCAGT
GAAGAATGTGAGAGAGAAATTCATATTTTGGAAATGGAGAAAAGATTACA
TGAAGAAGCTATCAAAAATCTCGATAAAGATATTAACGAGATGAACAGAA
AATGTTGCATTTGGAAGTCCTCAAAACGCTCAAAAATTGGATGATCAGAA
GATGAGTGGGGAAAATGTTTTGGAACTTGAAAACATCGGTGTCACAATCA
AAAGTGGAACAAGATATCCTGAAATCGCATGCAAAACAACTCGTTGATGA
ATTCAATCCACTGAAACGAGAAGTGAATGAGATTCGTACATCCATTGGAC
TTGATACCTTGCCCGACCTAACGGAAGTTGACGTCATACTGAAAAAGAAG
AAATGAGCCGAAATTATCACAACTTGAAACATTGAAAGCGAAGATTTTAT
GTGAAGTTGAACGTTGCTTGAAAGAAATCTCTACCAGTGAAGAATGTGAG
AGAGAAATTCATATTTTGGAAATGGAGAAAAGATTACATGAAGAAGCTAT
CAAAAATCTCGATAAAGATATTAACGAGATGAACAGAAAATGTTGCATTT
GGAAGTCCTCAAAACGCTCAAAAATTGGATGATCAGAAGATGAGTGGGGA
AAATGTTTTGGAACTTGAAAACATCGGTGTCACAATCAAAAGTGGAACAA
GATATCCTGAAATCGCATGCAAAACAACTCGTTGATGAATTCAATCCACT
GAAACGAGAAGTGAATGAGATTCGTACATCCATTGGACTTGATACCTTGC
CCGACCTAACGGAAGTTGACGTCATACTGAAAAAGAAGAAATGAGCCGAA
ATTATCACAACTTGAAACATTGAAAGCGAAGATTTTATGTGAAGTTGAAC
GTTGCTTGAAAGAAATCTCTACCAGTGAAGAATGTGAGAGAGAAATTCAT
ATTTTGGAAATGGAGAAAAGATTACATGAAGAAGCTATCAAAAATCTCGA
TAAAGATATTAACGAGATGAACAGAAAATGTTGCATTTGGAAGTCCTCAA
AACGCTCAAAAATTGGATGATCAGAAGATGAGTGGGGAAAATGTTTTGGA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004726XLOC_004726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008439-exon-sc0000085-1575043694:89127..89171TCONS_00008439-exon-sc0000085-1575043694:89127..89171Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1575043694:88986..89028TCONS_00008439-exon-sc0000085-1575043694:88986..89028Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1575043694:88059..88230TCONS_00008439-exon-sc0000085-1575043694:88059..88230Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1575043694:84721..85209TCONS_00008439-exon-sc0000085-1575043694:84721..85209Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1510915933:89127..89171TCONS_00008439-exon-sc0000085-1510915933:89127..89171Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1510915933:88986..89028TCONS_00008439-exon-sc0000085-1510915933:88986..89028Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1510915933:88059..88230TCONS_00008439-exon-sc0000085-1510915933:88059..88230Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1510915933:84721..85209TCONS_00008439-exon-sc0000085-1510915933:84721..85209Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1491911889:89127..89171TCONS_00008439-exon-sc0000085-1491911889:89127..89171Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1491911889:88986..89028TCONS_00008439-exon-sc0000085-1491911889:88986..89028Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1491911889:88059..88230TCONS_00008439-exon-sc0000085-1491911889:88059..88230Clytia hemisphaericaexon
TCONS_00008439-exon-sc0000085-1491911889:84721..85209TCONS_00008439-exon-sc0000085-1491911889:84721..85209Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008439-proteinTCONS_00008439-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:84721..89171 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.32307	30.4377	18.9402	1.25995	0.221491	0.0866068	0.603179	0.447219	5.5225	5.53061	4.15172	4.05223	2.65688	0.135313	0.327688	0.274367	0.570732	0.488432	0.137847	0.187697	4.76415	0.28078	1.81088	1.3227	0.354679	0.400306	0.16086	0.190207	0.658242	0.83172
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018482Znf-C4H2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top