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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008436 ID=TCONS_00008436|Name=TCONS_00008436|organism=Clytia hemisphaerica|type=transcript|length=732bp ctttttgaaaataggaaaatatGTTGAAGTGAAAAGAACATCGCGGTTAT CTTGTTTAGGGTGATTATTTTGAGGTTTTCAAAATGACAGAAATGGACTT CAAAACCAAAATTACTTACTTATTTCTATTTAGCATCTTTTATATCAAAG GCATCCATTCTCTGACATGTTATTCATGTTATGGAGGTGAAAGTTATTGT AATTCATCAAAGATAACCACAGTATGTCGAGGACGACAATATTCATGTCT ACTTTACTTCGCCAACACCAGAGAAATGCAGTCATCTTCAACGGAAAACA TCCGAAAAATGACACAAGGGTGCGCAGTAGAAGATCGAAATTACTGTAAG AAGAAAAAGGATGGAGACCCTGGTATCCTTTCTTGTAAGGCTTATTGGTG TTACAAAAACAAATGTAACTTTCCGAACTACGAAAAAGAAATCGACAACA ACATGGAGCTTGGTAATAACAATGGTTTAATTGGTCCATCTAAAGGCATC GTTGTCAACAAACAAAACTCCTACGAAAAGTTCTTCTCGAATGCTGTGTC AGCAGAATCGATGGTATTTGTCACTTTCATTTGCTGTGTATATGCCTTTT GTTGTTCTTTATGATAGCTGTTATTTTGAAAgattcttttttatcaaaaa gtgtaaACAGCTTTTGTAGAAGAGTCACTGTAtgatttttgattcatttt gaaattgagGAAAATAATAAAGATGGTTCTCG Run BLAST on NCBI protein sequence of TCONS_00008436-protein >TCONS_00008436-protein ID=TCONS_00008436-protein|Name=TCONS_00008436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MTEMDFKTKITYLFLFSIFYIKGIHSLTCYSCYGGESYCNSSKITTVCRG RQYSCLLYFANTREMQSSSTENIRKMTQGCAVEDRNYCKKKKDGDPGILS CKAYWCYKNKCNFPNYEKEIDNNMELGNNNGLIGPSKGIVVNKQNSYEKF FSNAVSAESMVFVTFICCVYAFCCSL Run BLAST on NCBI transcript from alignment at sc0000085:53304..60778- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008436 ID=TCONS_00008436|Name=TCONS_00008436|organism=Clytia hemisphaerica|type=transcript|length=7475bp|location=Sequence derived from alignment at sc0000085:53304..60778- (Clytia hemisphaerica) CTTTTTGAAAATAGGAAAATATGTTGAAGTGAAAAGAACATCGCGGTTAT
CTTGTTTAGGGTGATTATTTTGAGGTTTTCAAAATGACAGAAATGGACTT
CAAAACCAAAATTACTTACTTATTTCTATTTAGCATCTTTTATATCAAAG
GTAAAAGTTCGATTTATTATGCAGATTTCAAGTAAGGCTTAGCGGAACAG
GTTCTCCGAAAGTGGAGTAATTTTTAAGTTTAATTGTTTTCCCAAAAATA
ACAAAATACAATTCTTTCACATTTTTAGGCATCCATTCTCTGACATGTTA
TTCATGTTATGGAGGTGAAAGTTATTGTAATTCATCAAAGATAACCACAG
TATGTCGAGGACGACAATATTCATGTCTACTTTACTTCGCCAACACCAGA
GAAATGCAGTCATCTTCAACGGAAAACATCCGAAAAATGACACAAGGGTG
CGCAGTAGAAGATCGAAATTACTGTAAGAAGAAAAAGGATGGAGACCCTG
GTATCCTTTCTTGTAAGGTAAAACCTATCTTAATATGATATGCAGCGGAG
ACAAAAACGGATGTAGATTTTTAGCAAGAATTCGAATTCGATAGCGGTTT
TGTGCTTGTGGAAAAGATTTTCAGGTATAAATCGAATTGAAAAGCTAAAT
AGGAATTTAATTCTTCATATTTGATCTTCGTTTTCGAATTTTCTTGAAAA
AATTTTCAAATTATGATATCCCAATCACGATTATCACGATTGCTATATCT
TTCCAACGAGCACAAAATCGCAATCTGATTGAATCTCTATCAAAAGTTGT
TCACGCTGTAATTTTACTGAGAGCTAATTTGAAAATACTTCTTTCGAATT
CTATCGGAAGTTACAAGCCTTTTTTTGTCTCTGCTATATGTTATATTTAT
AATACCAGTGGATAACCCTTAAAACCTATAACAAAAAAGGTACCCCTTAT
ATGCTGATAGAAAAAACAGAAACTGAAACTTTTTCTGGTGAGTCTACTGG
GCTACAGTATGAATTTCTACCCTGGGTATGGTTTTTTTGTAAATGCTGCT
AAGAAAATTTTTATTGCTTCGTGAAAAAATGCAATTTTAGCTATTTACGC
CTTAAAACCTACAAAATGGTTTTCTTGAATAACTTTCATATAAAATAGTC
CTTTTGGTCTCAAATTTTAACAGTGATTCACTGCAAAGCTAATAATGCTA
CAATTAGATCATTGGTACCTAAATATTTTCAAAACTGTACGTTAAAATAA
AATTACACCTTACAACATACACTATTACACCTTAAAACCTACAAACATTG
ACCCCTTGCTAACAACTCACTGAAACTGTGAAATTGCAATTTAAGTGCTG
AACCGTGATTCAATTGATCAATACATTACATCATCAAATACTTGCTAGAA
ATCCATTCCCAAAACAATATTTGTATTTTTCAGGATTTCATACCCATGAT
GCAATTGCGCCTGTTTTTTGTGTGTCAAAAAACGGCCTTGAAGGATCAAA
ACTTTTATTCACCTCATTTTTGACGTATTTTACTAATGTCTTTTTAAATC
TCCATCAAAGAGGCCTCCCAGTCGACCCTCAATTCACGTAATCACGCACA
AAATTTTGCCAATTCACGTATTCACGCGCGAAAAAAACTATTTTTACGTT
CACGCGCCAATTTTGCTTTTATATCTTTGGTTAAAACATGAACATATAAA
CGACTGGACGTCCATCTCCTTTGTCTTTTTGTAGAAAGGGCTGCTACAAT
CATCTGTGAAAATTGTGAGACTTTCCAGTTAATTCAGGGTCCCCCGCTCC
CCCAAATCAATGTTGTGGATATCGGAGGAAATTTGACCATCAACGCTTTT
CGTATTCAAACAACATTGACTTGGGGGAGTGGGGGGAGGTGTCAGTCTCA
CAATATTATGCAGATGATGGNNACAGAGGCAAAATCATCGTCAGCTTGTC
AAAACTCCGACTAATATTTCTAAATTTTGACTTAAAAGTGTCTAATAATT
TTAGAGAGTGTCGCATTCTACTTTCGATATTCTTATAACACAGGCTCTAA
ACTTTGGCAAGCTATTTTATTCAAGTCATAAAAAAAATTATTGGAGTGAC
AAAAGGGATTCAAAAGTATACACGCAGTTGAAATTCTGCATTTTAGAGTT
GAAAATGTTGATAAAATATGTTACAAACTTGTGAAAAAATTCGAAAATAA
TTTTTTTGTACATTAGGAGTAATGTTCAAGCTCTATCAATCCTTTTACCT
AAATGATTCAAAGAAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCGAAGTTTTATCTAATTTTCGTATATTAAAAGGCTAGA
ATCTTCAATACTGATTATTAGAATGTTCAGAGCAAACTTGAGTTCTACTA
AAAAGTCTTATTTCATCGCTCGGGCGAGCTTAGAATTTATTTTGATACAT
TTTATAAAAGAAATCAAAAGACTTTAACGACCAATTACCGACACATTCAA
CTCCTGTTTTCTTTATACCTCTTTCCGGCAACGAAGCTCGCTTCAAAGAG
ACAATAAAAGATAGATGTCCAGTCGTTTATATGTTCATGGTGAAAACAAT
TGTGACCTTATTGGGCTAAATATGACCTTATTATGGTTTTTTAAGCAGTT
TGAGCTATTTATATGCCAAACATTTTCATCAATATGAAGTTTTCTGCAGT
TTTGTGACCTTATTCTCGATAAGGTCGACCCTTTAAGGGCTCTGACCATC
GTCGGAAAATTGATTTTAGTATTTGAACATAAAAGTTATGTTTTAGGTTC
TTTAACACTTTTAACAAAGAATTTCCTTATAAATCGCTTTTTAATCAAAT
TCCCTTGAGAGCAATTAAAAATTTAATTGCAAAAATGACGTTATGAACTT
TAAAAAGACGTTAATAATATGTGACATCACCTTCTTTTATAAAAAGTGCT
AAGTTTTAATGGGTAATTAACCTTTTTGTTTCGAAATTTTCTCAAACTGT
CCGCAAAGAATTGAACTTTTTTAGATTTTTCGAAAAAATTTTCTAAATTA
ATGCATCAAAAGTTATGGCTGTTTTCCTATGAAAAATTGGGTTGGAAAAT
TGGTCAAAAAGCACTATTTTCAAGATTTTGAAGGAAATAAGCTTTTAGAA
AAATTTTCCGAAAAAATAATTTTAGTTTGATAAAAGATACACCATTTACC
GCAAAAAAAATTTTCAAAATGTTTTTTCTTCGCCGAAACTAAGCTCTTCA
AAGTTGAAATACTCTTCTTTACAAAAATCTTCATTTGCTTCTTCATCAAA
TTTTTTCATTGCGATTCTTAAATTTTCAAACTCACGGATAATTGGCCTAA
CCGAATATGTATAACATGCCATATTTTTGTGTGCTACATTAAGTAGAAAT
TTATACTTTGTAAGTGGCAAATATTAAAAATTCACTATGGTCAAAGCCCT
TAAGGCATTTTTTACAGATATTTGAGCTTTAATAAAGCAATGTTTTAGGT
CTGCCGCGCCAAAGTTTCAAAGAACTACCCCTTTGTCTTAGGGTGGGCTT
TTGGTGTGGGATTTCTTCCTCGCAGAGCCTTAGAAAGTCTTTTCTAATTT
TAAATCGAGGTTAGGGCAATCATGGTTTGAGGAGCCATAGACTTCAAAAC
AAGCTTCGAAGAGGTGGAGCGGTAGTACAACCAGAGGACACCAATTCCAA
TGTTTCACCTCTATGTCATGAAAGGAAATGTATGGAAAACAACAAGGCGA
GCGTAGCATGCGCGAAATTATTCGACAACTTTCGCTCTTTTATGACTGAA
CAACGGCCCTAATACTATTGGCTATTGTTAGTCAAGTATGCCTTGTTTGG
TCACACAATTCTTTTGAAAATCTTTGATTTTATTTAACACTGACCATTTG
TTGGCAAAAATCTGGTACGGCGAGCGACGTACCTGCCTTACCCGGTGCGA
CGTTCCAAGAGTTTCGCTCAAGAGGAAACTTTTAAGATTTAGAATGACTA
GATTGTTTGAAAACGCATCACGTGTCCATTATCTATGAGAATTATTTTTT
AATTGTTCGATGCTGCATACATACAAGATGTTTTAGAACTACCTACTTTT
GCAAATTATTGAAGGAGCAAAAATCCTCTAAGTTAATGCGGTATCATTTT
GTGTATTGCAGTAACAATATAAGTGACTACGTAAAGTCGACCATTATTAA
ATGCTTACGGAGAAAATTTTCTCTAGACTATTTTGACTATTTGCTTTTCA
CGTTCAAGCTAAAAATCTCGATTCACGAATTCACGGTGGAAAAATGTTAT
TTTCACGTTCACTCTGATATCTCAATTCACGTATTCACGCGCTAAAAAAG
TCCAATTCACGTATTCACGTCAGAAAAAATGCTCATTTACGTGTCACGCC
AGCGCCTAGGGGAGCCCTATCAAATTTGTGACAATTTGGTATGCAATATG
ACAAAGTTTTGAGAAAGTTAATTTTCAGATTTTATTGGTTACTACCATAA
ATGAGCTTTAAAATAGAACTTTGAGGGCCTTACGATTTCTTTAGGGTGTA
ACCATAGAGAAGAAAATGATTTCTTCGTACCTACCATAAGTATAGGTACC
TAAATAGTATAGGTTTTATGACATTAATTTCATTTGTGTAATCTCTAGGT
CCGAAATATAAACTTGATTTTTTGAAGGGATTTTTGATAAAATTTTCAAT
AACTTCGAATTTTACGACACTTTGCGATGATTAAAATTCTTGAAATTAGG
TATTTTATGAAAGTACCTATATTAGAGATTGTAAAAAAGTGAATTAAACA
ATATTAAATTAAGTTTGGTGGTTAAGAGAGGCCAAATAACTTGTTGGTTT
TAAGGGGTATGTGGTTTTAAGGGTACCACTGGTAGAGACTGACTTCTTTT
TTTAAGGTACGTGTACACCTTTTTCCGATTTTTTGTCAAAAAATTCTTTT
TCAGTCAAAGTGGAAGAAAAGTTATTGGATTTCATTTTGGTAAAATCGCG
ATCTTAAAATCTTTTTTTGATCCAGAGTTATAACCATTTAAATTTCAAAA
CAAAGTTCGTCTTATGATGGATTATTTACTCAAATAATTGTCTCTTTCGG
AAACAACAAAGGGCCCCAACAAAGACAAAAGAGAGAATTCAGCTGATGTT
TATTCTCACCTCTATTGAATAGTAATATTTTTGACACATTTCACTGATTA
CTCAAATAAACAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACA
GCAATCATCTCGTTAAAAATTTCAAATTGATGTAGAAAAAAAACGAAATT
TTACCACACCATACTACTTTTAACGAAGTTAAAGTCACCCATAGCATTTT
TTTATGAGATTCCCAAAAGATCAAACTTAAAAAGTGTCTTAGGATTTTAT
TTCTAAGCGAGTTGTTTTTCCTCAATTTACAGATGATTGAAAAATTCACA
TTTAAATTTACTTTTTTATCGATATTTTTACAGAATTTAGGATTTGAAGA
GTTAGAGTCAATCCCAAAAAAAATCCCAAGATGCTTTTTTAGTTCAATCT
ATTGGGAACATAGTATCGAAATTATTTTTTCAAAATTCAAAAGCTATGGG
TTAACTTCTTTGAAGTAGGTAAGGTTAAAATTCTTAAGATTTTAATTATA
TCCTGCCCAGTTTTTTAAATTCAGCTGAAACCATTACCATTAGAAAGAGA
ATATTATTGGCTTTCAGAAAATATATTCTTTTGATATATAAAAATTTGTT
GTTCTAAAGATATGATCAATTAAAGAGAATGTGTCAAGAAAGGTGAACTC
ATACCTTAAGGGCTCTGGTCATAGTGAAAAATCAATTTCAGAATTTGAAG
ATAAAACCTTATGTTTTCGCTTCTTTGACATGTTTAAGAACAAACTGCTT
TTGAAAAAATGAATTTAAGTAATTACATCATGACTAATTAAGGAATAAGT
GTGGCATGGACCTTAATAAAGCGTCATAACGACGCTATTCATATACTTAT
CACAAAAAAGCCTCTGTAATCTCCTTGGGGAAATCATTTTATTGTTTCAA
ACTTTTTTAAATTGATGACAAATAATTTCTTTATTTAGACTTTTCCGGAA
AAATTTTCTATTTGGCCACATCCCAAGTTATAGCTGTTTTCGTATGGAAA
TTTAGTGGAGAAAATTGCCAAAAATGAGGTTTTTTGGAGATTTTCCGAAA
TTATATATTTTTAGATACTAAATAGATACATCACCTGAACCAAAAAAAAA
TCCAAAATGTTTCATTTTTACTGAGATTAGGGCTTTGAAAGGTGAAATAC
TCTTCTTCGAAAAACTCTTCGTTTTCTTCTTGATTTATTTTTTTCATTTC
AATTTTTCGATTTTTAAATTCTAAAAAGGTAGGTTTAACAGGACATATAA
AAAAAGTTACACATTAATCTTTTTAAAATGCAGAAATTGCCATTTAAGTT
GGTGTAAAATCGAAAAATTGTCCAGAGCCCTTATTTGCCAAACAAACTTA
AGTTTGAAACAAGCAATGGAAGAATTTTTTTTTCGTTTTTTATTGAACAA
ATTATCTTTTTGGCTAAAAATATACAAATCCATAGCGATTTTTGCGAAAT
TCTAACTGCTTTTTACGATATTTTTTTTCTAGGCTTATTGGTGTTACAAA
AACAAATGTAACTTTCCGAACTACGAAAAAGAAATCGACAACAACATGGA
GCTTGGTAATAACAATGGTTTAATTGGTCCATCTAAAGGCATCGTTGTCA
ACAAACAAAACTCCTACGAAAAGTTCTTCTCGAATGCTGTGTCAGCAGAA
TCGATGGTATTTGTCACTTTCATTTGCTGTGTATATGCCTTTTGTTGTTC
TTTATGATAGCTGTTATTTTGAAAGATTCTTTTTTATCAAAAAGTGTAAA
CAGCTTTTGTAGAAGAGTCACTGTATGATTTTTGATTCATTTTGAAATTG
AGGAAAATAATAAAGATGGTTCTCG Coding sequence (CDS) from alignment at sc0000085:53304..60778- >TCONS_00008436 ID=TCONS_00008436|Name=TCONS_00008436|organism=Clytia hemisphaerica|type=CDS|length=1593bp|location=Sequence derived from alignment at sc0000085:53304..60778- (Clytia hemisphaerica) GCTTATTGGTGTTACAAAAACAAATGTAACTTTCCGAACTACGAAAAAGA AATCGACAACAACATGGAGCTTGGTAATAACAATGGTTTAATTGGTCCAT CTAAAGGCATCGTTGTCAACAAACAAAACTCCTACGAAAAGTTCTTCTCG AATGCTGTGTCAGCAGAATCGATGGTATTTGTCACTTTCATTTGCTGTGT ATATGCCTTTTGTTGTTCTTTATGAGCATCCATTCTCTGACATGTTATTC ATGTTATGGAGGTGAAAGTTATTGTAATTCATCAAAGATAACCACAGTAT GTCGAGGACGACAATATTCATGTCTACTTTACTTCGCCAACACCAGAGAA ATGCAGTCATCTTCAACGGAAAACATCCGAAAAATGACACAAGGGTGCGC AGTAGAAGATCGAAATTACTGTAAGAAGAAAAAGGATGGAGACCCTGGTA TCCTTTCTTGTAAGATGACAGAAATGGACTTCAAAACCAAAATTACTTAC TTATTTCTATTTAGCATCTTTTATATCAAAGGCTTATTGGTGTTACAAAA ACAAATGTAACTTTCCGAACTACGAAAAAGAAATCGACAACAACATGGAG CTTGGTAATAACAATGGTTTAATTGGTCCATCTAAAGGCATCGTTGTCAA CAAACAAAACTCCTACGAAAAGTTCTTCTCGAATGCTGTGTCAGCAGAAT CGATGGTATTTGTCACTTTCATTTGCTGTGTATATGCCTTTTGTTGTTCT TTATGAGCATCCATTCTCTGACATGTTATTCATGTTATGGAGGTGAAAGT TATTGTAATTCATCAAAGATAACCACAGTATGTCGAGGACGACAATATTC ATGTCTACTTTACTTCGCCAACACCAGAGAAATGCAGTCATCTTCAACGG AAAACATCCGAAAAATGACACAAGGGTGCGCAGTAGAAGATCGAAATTAC TGTAAGAAGAAAAAGGATGGAGACCCTGGTATCCTTTCTTGTAAGATGAC AGAAATGGACTTCAAAACCAAAATTACTTACTTATTTCTATTTAGCATCT TTTATATCAAAGGCTTATTGGTGTTACAAAAACAAATGTAACTTTCCGAA CTACGAAAAAGAAATCGACAACAACATGGAGCTTGGTAATAACAATGGTT TAATTGGTCCATCTAAAGGCATCGTTGTCAACAAACAAAACTCCTACGAA AAGTTCTTCTCGAATGCTGTGTCAGCAGAATCGATGGTATTTGTCACTTT CATTTGCTGTGTATATGCCTTTTGTTGTTCTTTATGAGCATCCATTCTCT GACATGTTATTCATGTTATGGAGGTGAAAGTTATTGTAATTCATCAAAGA TAACCACAGTATGTCGAGGACGACAATATTCATGTCTACTTTACTTCGCC AACACCAGAGAAATGCAGTCATCTTCAACGGAAAACATCCGAAAAATGAC ACAAGGGTGCGCAGTAGAAGATCGAAATTACTGTAAGAAGAAAAAGGATG GAGACCCTGGTATCCTTTCTTGTAAGATGACAGAAATGGACTTCAAAACC AAAATTACTTACTTATTTCTATTTAGCATCTTTTATATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008436-exon-sc0000085-1575043694:60629..60778 | TCONS_00008436-exon-sc0000085-1575043694:60629..60778 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1575043694:60262..60500 | TCONS_00008436-exon-sc0000085-1575043694:60262..60500 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1575043694:53304..53646 | TCONS_00008436-exon-sc0000085-1575043694:53304..53646 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1510915933:60629..60778 | TCONS_00008436-exon-sc0000085-1510915933:60629..60778 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1510915933:60262..60500 | TCONS_00008436-exon-sc0000085-1510915933:60262..60500 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1510915933:53304..53646 | TCONS_00008436-exon-sc0000085-1510915933:53304..53646 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1491911889:60629..60778 | TCONS_00008436-exon-sc0000085-1491911889:60629..60778 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1491911889:60262..60500 | TCONS_00008436-exon-sc0000085-1491911889:60262..60500 | Clytia hemisphaerica | exon |
TCONS_00008436-exon-sc0000085-1491911889:53304..53646 | TCONS_00008436-exon-sc0000085-1491911889:53304..53646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000085 | supercontig | sc0000085:53304..60778 - |
Blast
The following BLAST results are available for this feature:
|