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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008434 ID=TCONS_00008434|Name=TCONS_00008434|organism=Clytia hemisphaerica|type=transcript|length=1584bpRun BLAST on NCBI protein sequence of TCONS_00008434-protein >TCONS_00008434-protein ID=TCONS_00008434-protein|Name=TCONS_00008434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp MSFGEGIQEKVETIGDFTVTIQEKEGEGKKIGSLVTFHDIGLNHNSYQKFRun BLAST on NCBI transcript from alignment at sc0000085:16937..46752- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008434 ID=TCONS_00008434|Name=TCONS_00008434|organism=Clytia hemisphaerica|type=transcript|length=29816bp|location=Sequence derived from alignment at sc0000085:16937..46752- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000085:16937..46752- >TCONS_00008434 ID=TCONS_00008434|Name=TCONS_00008434|organism=Clytia hemisphaerica|type=CDS|length=13146bp|location=Sequence derived from alignment at sc0000085:16937..46752- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008434 vs. Swiss-Prot (Human)
Match: NDRG1 (Protein NDRG1 OS=Homo sapiens GN=NDRG1 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.885e-33 Identity = 93/306 (30.39%), Postives = 157/306 (51.31%), Query Frame = 3
Query: 207 QEKVETI-GDFTVTIQEKEGEGKKIGSLVTFHDIGLNHNS-YQKFFQNEYNMQFYDKFVVYHIDMPGQQKGAEKFSAQYQFPSLSRMAEMLVPVMEHFSLSDXXXXXXXXXXXXXXHLSMLKPELFLGIAVIDPAGKSPGFKEWGEEKLAAWQLETKGFNSMTEKFLIWHLFGTKGKKVNMEMVDEHIKEITANQNPHNLAQYVKAYMNRTDVMNEAGQ------KIKCQVLIMTSAFSPYKEDAHAFKSKLAIGKSSVLECTESINIF-FEDPGKCGEGILLLMQGLGLVPT------LRTRTAS 1079
++ +ET+ G VT+ + + ++T+HDIG+NH + Y F E + F V H+D PGQQ GA F A Y +PS+ ++AEML V++ F L IG+G GAGA +L ++ PE+ G+ +I+ + G+ +W K++ W T+ M ++ HLFG + + N+E+V + + I + NP NL ++ AY +R D+ E ++C L++ SP + SKL K+++L+ + + P K E +QG+G +P+ +R+RTAS
Sbjct: 34 EQDIETLHGSVHVTLCGTPKGNRPV--ILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW---TQALPDM----VVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTAS 330 The following BLAST results are available for this feature:
BLAST of TCONS_00008434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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