TCONS_00008432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008432
Unique NameTCONS_00008432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008432 ID=TCONS_00008432|Name=TCONS_00008432|organism=Clytia hemisphaerica|type=transcript|length=747bp
TNTGGCGGAGATAAGAAAGATAAGAAATCTTCTTCAGGAACCAAAACATG
GATTATGGAGGGAGACGAGACTGTTGATCTTATGGACCCCAAAATCGCAC
AAAATATCGTCGGAACTCGTCCAAAGCTTCACGCAAGGAAACGTGGAGGT
GCGTCCGCAGGTTTTGAAATGTCATCCGACGGTAAATTCATGATTGATAA
CAAAACAAATGATCAGACCAACAATGAAGATGATATTACTGAAAAACCAC
TCGATATCGGTCAACAAGACATGTTAGCAGGGTTCGACAAGACTCCGAAA
CAACTGAAAGCTGGTAAGCGTAAAATGTTGGAGGACATGCCAGAGAGCGA
AGGAGGGAAATTTGAATATCAACCTGGTGGTCGTGGTATCCATCGTGATC
GAGACATGGATGATGATGATCAACCGGCACCAAAAAGAAGATTCGGTGGC
GAATATAAAGCTAAAAAAGCCGGAGGTGACATGAAGTTGAAAGGAAAACC
GGACCCTTACGCTTACATACCTCTTGATcgacaaaaattaaataaaagAA
AACGAGCCAAGTTGACAGGTCAGTTCAACAGTATGGTAAAAGCGACAAAA
CGAGGAGCAGCCAAAAgtaaacaacaaaagaaacataagaaataaatttc
atttgattttatagatttttataCTGCTTagatattattttttgcttttg
ctaAAACTGAAATATACTTTAAATGACGTGGACTATCAAAATAATGA
Run BLAST on NCBI

transcript from alignment at sc0000085:664394..667946+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008432 ID=TCONS_00008432|Name=TCONS_00008432|organism=Clytia hemisphaerica|type=transcript|length=3553bp|location=Sequence derived from alignment at sc0000085:664394..667946+ (Clytia hemisphaerica)
TNTGGCGGAGATAAGAAAGATAAGGTTGGTCCTGTATTTGTActtatttt
tctttagttttcctCCTTTTAACTGAGTATTGTTTAGCTTTTAGGCTGGC
TATCTTTCTTCTTATGAATGAAATGAATAGCTTTTTCATGAACCTTATTA
GGGAACCGACATATTTTTATTAACCAGACTAGATATCATTGTTCAAACCT
TCGCCCTGCAAATGTCCCTTCATTTCTTAATGGCTAACGGAACCAACTGA
TAACTAGCCAGACTGATGTCATTTTGTTTAAACCTTCGCCCCTTCTTTTC
TCTATAGAAATCTTCTTCAGGAACCAAAACATGGATTATGGAGGGAGACG
AGACTGTTGATCTTATGGACCCCAAAATCGCACAAAATATCGTCGGTACG
TAATCCTTTCTCAATGGTGGCGTTCCTAGGCGTTAATCATCGAGAAAAAT
ACTCAGCttaacattgaaaatgtttagaaaaacgNTTGGTGGTGTTCCTA
GGCGTTAATcatcgagaaaaaaatactCAGCttaactttgaaaatgttta
gaaaaacgTCTCATCTTGTCCTGGAAGGTTCACCAGAATTTTAAACGGTT
TTTGGAATTGTCTGTAAAAAGACTCTATATCTACtgagatttcaaaattc
attgccgaaGACTTCGCGGCGAAGAGACCCTTGGTAGCACGAGCAATAAA
CTTAAGATACACTCCGTTACAGAGTAATTTGATTTATAATCGTCTTTatc
aatttagaaaaaacaaaagtatCTAATCTTCATATTTTAAATATCACCAG
GAACTCGTCCAAAGCTTCACGCAAGGAAACGTGGAGGTGCGTCCGCAGGT
TTTGAAATGTCATCCGACGGTAAATTCATGATTGATAACAAAACAAATGA
TCAGACCAACAATGAAGATGATATTACTGAAAAACCACTCGATATCGGTC
AACAAGACATGTTAGCAGGTCAGTATATTACCATTCAAATATTAATTCAT
TACTAACCAGTTGTCTTATATCCTAAGTAAATCCTAAGTTGTCCTGCCTT
CTTGACTCAAATGGgcctttccagaaaaaaaaaaccgtatacccacTTTT
GATAAGGTCCTAGAGgttcaaattttgatatgtgACAGAATTCaagaggg
gtttaaacctaaAATTGCCTGAATTTCCAGGAGGTTACAGCCACAAaggg
ttggacctcctcaacagagGGTGTACTTTTTTTTCTGGTAAAGCTCGATT
GCTGTGAGTAAACTTTcaattttccatttcttttgtttttcttacaAGGG
TTCGACAAGACTCCGAAACAACTGAAAGCTGGTAAGCGTAAAATGTTGGA
GGACATGCCAGAGAGCGAAGGAGGGAAATTTGAATATCAACCTGGTGGTC
GTGGTATCCATCGTGATCGAGACATGGATGATGATGATCAACCGGCACCA
AAAAGAAGATTCGGTGGCGAATATAAAGCTAAAGTATGTATCAATCATTT
ATCAATAAAGTCCCTAGATATTGGAACATCATTAACAATAAATAAACTAT
GCCAGAACAACCCTTATTTTTATCAACTTGATAGTCTGATTCATATTGTA
ACATATTGTTACCAAGCTATATACACCAAATGTCGAGCCaaatatcaatt
ttaaattatttttagctAAATATGAGGGCTTAAGGTATTGCATACTTAGT
GATGGCCCTAAAAGATCGAACAATAGATTTTCCTAAGAGCTTTATTGAGA
CCTGAAATGTTTATTGTGCTCTACATGTTTATTTATAAGCAACCCCAATT
TTCGGCTCAGGGCTTGAGGTGTTAAGGATTTTCTggatttcagccaaaaa
gttGCTTATGGATTTTGAGCCAATAATGCTTagtaactttgaaaatttta
gctttttatCTCATTTAATATCCAAAATACCTTAAATTTGGTATTCAAAT
CCCATCGGTACACATTTTAATACCGAAGATGCATCTTTCAATCTTAggta
ttttttggttgctttccCGGTTCATACTCAGTTTCAGGGCTAAGTTGCTA
AGGCCAAGTTGCTTAATTTTCGGCCATTCTCAGTGCTGGACCCCTAGCAA
CTcgtttgcttataaaaaaagtgttatCATATTATTACCTTGAATTTTGC
TAatcaacatttttgattttgtttcacAGAAAGCCGGAGGTGACATGAAG
TTGAAAGGAAAACCGGACCCTTACGCTTACATACCTCTTGATcgacaaaa
attaaataaaaggtGAGTAAGTTCTCGAAGACGTATGAATAGGCTTTTtc
gtaaattattttgagttcaacgactgcctcgttttgaaaccattacctaG
GTGATTAAATTCCTTGAGCCTTCAAATGTTAATCTTTTAAATAGAGTAAA
CTTCTTATGAACTATTTTGgaaatcaattaccatagcGATATCTTGAACA
CGAGGCGGGcgttgttcgtgacgtaatttatgaaaaggtctatagcaATA
ATTTCAGGTTTGATTAATATTATTAATGcaatgtcaaattttcattGACT
GTAAAACCCGGGgtgggcactgggtttgcggactgacggtatgtgcgggc
caaaaattggcttttaaaattgcacccttacagtgcagcaaaaatcagtg
aaaatcatacccttagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccgggtttt
aaAATTATTCAGGTTCTTTTTTACAAGACTTGCACCATTCCCACACACGC
ATTCGTGTTAATGACCTGGTGATTGATCAAGATATTCTCTTCACTTACCT
TTAGAAAACGAGCCAAGTTGACAGGTCAGTTCAACAGTATGGTAAAAGCG
ACAAAACGAGGAGCAGCCAAAAgtaaacaacaaaagaaacataagaaata
aatttcatttgattttatagatttttataCTGCTTagatattattttttg
cttttgctaAAACTGAAATATACTTTAAATGACGTGGACTATCAAAATAA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004722XLOC_004722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008432-exon-sc0000085-1491911889:664394..664417TCONS_00008432-exon-sc0000085-1491911889:664394..664417Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1510915933:664394..664417TCONS_00008432-exon-sc0000085-1510915933:664394..664417Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1575043694:664394..664417TCONS_00008432-exon-sc0000085-1575043694:664394..664417Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1491911889:664701..664788TCONS_00008432-exon-sc0000085-1491911889:664701..664788Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1510915933:664701..664788TCONS_00008432-exon-sc0000085-1510915933:664701..664788Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1575043694:664701..664788TCONS_00008432-exon-sc0000085-1575043694:664701..664788Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1491911889:665194..665361TCONS_00008432-exon-sc0000085-1491911889:665194..665361Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1510915933:665194..665361TCONS_00008432-exon-sc0000085-1510915933:665194..665361Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1575043694:665194..665361TCONS_00008432-exon-sc0000085-1575043694:665194..665361Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1491911889:665692..665876TCONS_00008432-exon-sc0000085-1491911889:665692..665876Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1510915933:665692..665876TCONS_00008432-exon-sc0000085-1510915933:665692..665876Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1575043694:665692..665876TCONS_00008432-exon-sc0000085-1575043694:665692..665876Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1491911889:666573..666655TCONS_00008432-exon-sc0000085-1491911889:666573..666655Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1510915933:666573..666655TCONS_00008432-exon-sc0000085-1510915933:666573..666655Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1575043694:666573..666655TCONS_00008432-exon-sc0000085-1575043694:666573..666655Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1491911889:667748..667946TCONS_00008432-exon-sc0000085-1491911889:667748..667946Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1510915933:667748..667946TCONS_00008432-exon-sc0000085-1510915933:667748..667946Clytia hemisphaericaexon
TCONS_00008432-exon-sc0000085-1575043694:667748..667946TCONS_00008432-exon-sc0000085-1575043694:667748..667946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:664394..667946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.72689	9.53082	2.52796	1.22999	13.862	13.7175	8.59415	10.3559	12.4745	6.86571	15.0133	12.1795	25.3559	34.9797	25.8562	20.9212	18.8532	18.9316	10.1753	9.64497	18.3894	13.7017	19.8965	14.4256	15.2386	10.5465	10.2617	10.2626	8.66999	11.0468
Blast
[Close]
BLAST of TCONS_00008432 vs. Swiss-Prot (Human)
Match: RRP12 (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.037e-21
Identity = 71/195 (36.41%), Postives = 109/195 (55.90%), Query Frame = 1 
Query:   49 WIMEG--DETVDLMDPKIAQNIVGTRPKL-HARKRGGASAGFEMSSDGKFMIDNKTNDQTNNEDDIT----EKPLDIGQQDMLAGFDKTPKQLKAGKRKMLEDMPESEGGKFEYQPGGRGIHXXXXXXXXXQPAPKRRF-GGEYKAKKAGGDMKLKGKPDPYAYIPLDRQKLNKRKRAKLTGQFNSMVKATKRGA 609
            W+ EG  DE ++ +DPK+AQ ++ T+P     RK+     GF++S+DG+ +I  + +     E++      E+  D  +  ++        + +    +   ++P       +YQ GG GIH         +P  K+   G EYKAKKA GD+K KG+PDPYAYIPL+R KLN+RK+ KL GQF  +VKA +RG+
Sbjct: 1108 WLKEGGGDEPLNFLDPKVAQRVLATQPGPGRGRKK---DHGFKVSADGRLIIREEADGNKMEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPP------QYQAGGSGIH---------RPVAKKAMPGAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRGS 1284
The following BLAST results are available for this feature:
BLAST of TCONS_00008432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP123.037e-2136.41RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 S... [more]
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