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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008430 ID=TCONS_00008430|Name=TCONS_00008430|organism=Clytia hemisphaerica|type=transcript|length=893bp
AAAAGGTAGCAGgcaataaaaaatatcatcacTGCACTTTAATTGATCTT
TGtgagtttgaatgataaaaatTCATTAAAGTGTAAAATGCTGCTATAGA
TCGGCAATAAATTTTCTTGTCATCTTTGCTTGTTTGTATCTCTTTTTGAA
ATGCTACAAGCTTCTGCATTTTTGTAGAATTTTGAATGAAGTTCATTTCT
GTTGTCTTTTGAAATGGAATTGGTTGGAAAGCAAGAAGGCTCGGAAGAAC
CATGCAGTATTTATCTGGTGGCGTTTTGTTTATTCTCTATTTGGTTGGTT
TTCGCAATCATCGCACTACTTGCACCGCCATTATGTTGTCAATGGAAACA
AAATGGCCAGCaagaagaagaggaagaaggCTCAACTTGGAAGAACAATG
AACGACTAGTCAAATTTTCTGATTCTTCTTTTGAGCAAAAGGAAAGAACT
TTTTCAACGATAACAAAACAATCAGATGATATGGACACTTCGCAATTCGA
AATTAGTTACaatacttgaaatttttttgtaatatatttgATGATAAAtg
tcaacttttttaaaaaatctatcTTACTCGATAAAAACCAATTCAGAAAA
TTCAACTCAGAAAATGACATATTCTTGTTGTCTTCTGGTTTcatgattat
gacgtcattggcCAAGACGCGATAGTCAGTTATTAGTTACAATATTACaa
tatttttcgcgaaaaaagGTAATAACAATTGGGTTAGACGGCCTAGATTA
AAATTAACAtaatagtacccttcatgttcagtcacttttttgatcatttt
ctgtATCCTATTCGAAATTATGGTAATTGTCCCTGGAGGGATACTAGGTG
TGCGAGGTATGACGGGTATGTCAAAGTCAAAAGAGAACCTTAG Run BLAST on NCBI transcript from alignment at sc0000085:605799..610579+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008430 ID=TCONS_00008430|Name=TCONS_00008430|organism=Clytia hemisphaerica|type=transcript|length=4781bp|location=Sequence derived from alignment at sc0000085:605799..610579+ (Clytia hemisphaerica)
AAAAGGTAGCAGgcaataaaaaatatcatcacTGCACTTTAATTGATCTT
TGtgagtttgaatgataaaaatTCATTAAAGTGTAAAATGCTGCTATAGA
TCGGCAATAAATTTTCTTGTCATCTTTGCTTGTTTGTATCTCTTTTTGAA
ATGCTACAAGCTTCTGCATTTTTGTAGAATTTTGAATGAAGTTCATTTCT
GTTGTCTTTTGAAATGGAATTGGTTGGAAAGCAAGAAGGTTGGTAAAGAC
TAGACGCTGATTTCTAAAAGCACTGCTATTTTTATCCTTCATAAACCGAG
ACCTATATATTTTATGATTAGATATTTTCTGGTCTAAAATTAGTAAAATG
CGAGAAGATATATAGTTGGTATTTCTATTAAATAATAGTCTCTGCTGAga
tttttcgatgtttttaatTGGGAAAAATATTATCCTTTTTTTTCTCCGAC
CGGCTGTCTTATACCTAATCTGGCCAACAAAACTTGTTGTTGACTTATGC
GCTGGGAGGGGGCACAAGTGATCTAAGGTCCCTTAGGTTAAAACATTTCT
CAGAATTTAATctctacagtatgtggcccccaaaacggcgatcaaatttg
aaatttctctcaaatctagaggaaaagagattttacaaaaatttttgctg
catgaaaacctttaacatctctactttatttctttagttctttttcaaaa
ttttcaatttcaacaatatttttcaatcgctttaTAAAGATAGGTAGCTT
TTTTCTAGTGGCCCCCAAAACGGAGGTTTGAAATTTTagcgatttctcga
gatatctttaagatatgaatacaaaattttgaccatagttttgaaatatg
atttagaggggtttgggcataaatttatttgataaaatttttacagtata
cccctggttgtcaaaatgcaggtgcggggcccccaaaacggaggtgtagt
taaaatcaaactattaagcccagtggtaataggggggaaaactatgaaca
tattacACGTGTTtgcccttaaatttacgacccgatggatgtaaaattta
ggatttttatgaaatatttgaagattttcgatatttcaaagtccaaactg
aaaatttagaaattttcaaaatgataattttgatttaacaacgtcttaat
caagtttttgaaaaaaatcccttttgaaaatagttccattcatgtatgga
ataagctgtgaaaattttagaaaaaaagcttaactgaaactgaaaatatt
aagctttaaagatattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgtta
taaactattaactcaaggtgataggaatagaatcccaaaattttttgctt
tttctcatatttagaattttcggttttgtcaatgctgattctagggctcc
aaaatactggttgaccttcaagatgctatatcttttacccagcctctaaa
gtcacagatgtatttgcactttctgaacggcattaggtgtagaaagtttc
ctttaccccgttttcataacttatttttaatATCCAAGgtgctagagtga
gttatatgcaatttttatctaattttggtgttaaaatatttcctttagac
gcaaatatgttattttgaatctgtctcaaaccagcaaaaacatgctcatt
tttaagtataaccatcattctttcaaaataaacaaaaatcgattaattct
gataaatctacaagtcagaatcttcattttaatgaaaacctccgttttgg
gggccgtctccgttttgggggccatatactgtatgcTTATGTGAAAATTG
CGATTTTagtacagtaaaacctctaattaacggacactctaaaaggcgga
cacctctgattagcggacaatttcattttccccggccgtttcctagtcaa
atcctcataaaaaagtttctaaaaggcggacactcaattagcggaccctc
cgattagcggacaaattttttcgcacgaaattgccaaaacccctatttta
gctctccaattagcggacattgaatatcaaacggatcacagacgtccaaa
atcgaaaaaaaaatttttagatatttttatttcaagcacttaataatttt
ttttttcttattattcaaattatttctacaaatttctaGTTTTCCTTTGA
ACCATTCAACGAACTTAGGTGGGCCAAAGaatcataaatcactggtacAT
CAAGTCCGTACCCACCACCTCGATTTAACCTCTTGCCACTCACTCGAGCT
CTgttttaataacctttctctNTCAAGTCCGTACCCACCACCTCGATTTA
ACCTCTTGCCACTCACTCGAGCTCTgttttaataacctttctcttgttct
tctatggcctagtgtctgcagataagtactttagaccccaattttgtatt
tttgactccctgggatggcctaatttcaaaattggagctccgagatcaaa
agtttctaaaaggcagacacttctaattagcggacactaacacctttccc
cgatggtgtccgctaatagCACACCGtggtgaatctaaaaatagacatca
cTTTCTTTATTTGCCCGAGTTTCAATCACATCGTTCATNatctaaaaata
gacatcacTTTCTTTATTTGCCCGAGTTTCAATCCCATCGTTCATTGCGT
TAATTTCTTGTGCACATTAATTACACTTATAACAAAGAAAATGTAACAAC
TCTCAcgattttgaaatcaaagtgaaAGGGATTATGGGATTGAATGTCgg
acaaatttgaaaagtaataattatgacgtttgcataacggAGCGctatta
gaggttccactgtactTCCATGGTACTTTCCACAttatttcattggatat
ttcgattttggagttATTATTTATTGATTATTAGAAGCATTTTGAGTTTT
GGATCCTGAAGTCTCGTGTTAAACCTTAGAATTAAAACTCCACACGTTCC
AGGATTAACTCAGAGCATTTAAATATCATTTGCGGTGTTTAATATTTTGC
AGGggatcactttttttatcaaatatNAGAgcatttaaaaatcatttgcg
gtgtttaaaaattttgcaggCGGAATCACTTTATTTATCAAAACCATGCC
TTTGATTGTAGTCGTGTGCATTTGCTGCCGGTTTAATTTTAAGAAATGTC
AAAAGATGGTTGGTTAATGTAAAACGGGGCCAATTATCTTCCCTGAGTAT
CAAAGGCCAGTGatcagagaaaatattttgaccagGCTGTGATACTCACA
GTACGATAGTATCAAGGTCAGCCAGTCTCAAAACACTAGGACTGCGATTT
AGAATTGGGCTGGGCCCTTAGGCAACCCAATtggtaaaaatgttttttaa
aactttttgtaaTCTTTTCATAACATCGACCTTCTGCATAgtaagtaagt
agtaagtaatTCGTCTGGTGGCTATCAGCGGAGCCGGGAGTgggggagtc
tatccccttttttATTTGCGCTATACTTGGGAGGTCAAATgttgaggtgg
agcgccactcCTACTCTCAGATCCCCGTGACTTACCGCTTAGGTCAGATT
ACCCAACATTCATTGGATTGTAAGGCAAAtactctaccgactgagctaca
cGGCCACAATCTGCATATCTAATGCCAATCAAAGCATTCCCTATTGAAAC
TTCTAGCGTATAATCGCAACCTCTTTTTGCTAATTTCCAGGCTCGGAAGA
ACCATGCAGTATTTATCTGGTGGCGTTTTGTTTATTCTCTATTTGGTTGG
TTTTCGCAATCATCGCACTACTTGCACCGCCATTATGTTGTCAATGGAAA
CAAAATGGCCAGCaagaagaagaggaagaagGTACCAATCACTATTTTTC
AGTGTATCAATTTTTTATCCGTAGAATAAAGTTAGAATTTGCATTTTGGA
CAGCTCGCCGTCAAGTAAGACTATAAACATCAAGGCTCTATCaaatggct
gaaatttttaACTGAAGACTTAAGACGGCAGCCTTAAAAGTAGTTGTAAA
AGATACCTCTAtttttacaatataattttcaatgataaaaaaaagcctaa
aattttctaattttcaggCTCAACTTGGAAGAACAATGAACGACTAGTCA
AATTTTCTGATTCTTCTTTTGAGCAAAAGGAAAGAACTTTTTCAACGATA
ACAAAACAATCAGATGATATGGACACTTCGCAATTCGAAATTAGTTACaa
tacttgaaatttttttgtaatatatttgATGATAAAtgtcaactttttta
aaaaatctatcTTACTCGATAAAAACCAATTCAGAAAATTCAACTCAGAA
AATGACATATTCTTGTTGTCTTCTGGTTTcatgattatgacgtcattggc
CAAGACGCGATAGTCAGTTATTAGTTACAATATTACaatatttttcgcga
aaaaagGTAATAACAATTGGGTTAGACGGCCTAGATTAAAATTAACAtaa
tagtacccttcatgttcagtcacttttttgatcattttctgtATCCTATT
CGAAATTATGGTAATTGTCCCTGGAGGGATACTAGGTGTGCGAGGTATGA
CGGGTATGTCAAAGTCAAAAGAGAACCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008430-exon-sc0000085-1491911889:605799..606036 | TCONS_00008430-exon-sc0000085-1491911889:605799..606036 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1510915933:605799..606036 | TCONS_00008430-exon-sc0000085-1510915933:605799..606036 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1575043694:605799..606036 | TCONS_00008430-exon-sc0000085-1575043694:605799..606036 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1491911889:609689..609829 | TCONS_00008430-exon-sc0000085-1491911889:609689..609829 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1510915933:609689..609829 | TCONS_00008430-exon-sc0000085-1510915933:609689..609829 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1575043694:609689..609829 | TCONS_00008430-exon-sc0000085-1575043694:609689..609829 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1491911889:610066..610579 | TCONS_00008430-exon-sc0000085-1491911889:610066..610579 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1510915933:610066..610579 | TCONS_00008430-exon-sc0000085-1510915933:610066..610579 | Clytia hemisphaerica | exon |
| TCONS_00008430-exon-sc0000085-1575043694:610066..610579 | TCONS_00008430-exon-sc0000085-1575043694:610066..610579 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:605799..610579 + |
Blast
The following BLAST results are available for this feature:
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