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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008427 ID=TCONS_00008427|Name=TCONS_00008427|organism=Clytia hemisphaerica|type=transcript|length=212bp
TATAGAAATAAGGAATACTTTAAAAGCAAATATAAAATGGCTAAGAATGG
TAAATTCAAGACGCTGTTGTGGTTGTATGTTTTGATCAATCAATCTCACC
TTAAAGAATTTCCTTCACCCAAAAGGGTGATTCTCCACTCGGCCACCGGT
TCCAGTAAACGCATTAACAGATCACGGCATGCTAAAATGGATGATTTTCA
AAAGAAGAGTGT Run BLAST on NCBI transcript from alignment at sc0000085:576652..586319+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008427 ID=TCONS_00008427|Name=TCONS_00008427|organism=Clytia hemisphaerica|type=transcript|length=9668bp|location=Sequence derived from alignment at sc0000085:576652..586319+ (Clytia hemisphaerica)
TATAGAAATAAGGAATACTTTAAAAGCAAATATAAAATGGCTAAGAATGG
TAAATTCAAGACGCTGTTGTGGTAATGTATAAATCTATTTTTCGTGTGTT
TTACCTACAGAATTTCTGCCACAGCGAATCTTCAGTCATTCAGTCATCTT
CCAATGTTGTTAGATATATCAGTTATTTTATGTCCGCCCTTATTAATGTC
GTTTTATTACAGTCATTTTCAACTAGCACTGATTTTGGAGGGAGGTCGGT
AACGCCATGGTCTAATCAATATGaagcaagggggggggggggttggtact
aaaatctcagacatgttgtttagtgacgtggtggtNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTATGTAAAACAGCCACATACAGCTATA
TTTAGCGGTCCCACAAGCTGtggaaaaacacaaaaagttcTCGATCTAAT
CGAAAAAGAATATCAGCATcatagaccagcgtccgagtttcagaaaaggc
cttaaaacaggttttcgtagggcaccccttagatcagggcaaatttttga
tattttgtcaatTTCGCCTTATAGAagtcacaaaaaaaatttgcctctGA
AAAaccctgcagttttcgagtaaTTCGATGTTTAAAATCACATTTTACTC
GATTTTACTCGATTACTGGTAGCAATCGAGTTTTGCTTATACGAAGGGTT
TACTCAAtggaaaaagaataaaaattgcCAGGATGGATAATAACATTGTA
AAGATCATTTCTATAATCATCAAAAGTCTCTTGTTACCAAAgtgattttc
atcatttttatatcattttcacAATTCTTtcgtgatttttcaaaaaaatt
aaaagttttctcGTTCTAAATAAAACTTCTTAAGTTCAATTACTTTATTA
TTCAGTCAAATGTTTTTAGTGTTTAATCAATTCATAAAATAGCATCAATT
AAAAGTATTAATTCTTGCAAAAATGAATATCATATTGCAAAAAATCAGCA
CGGACAATGGTCCCGAGAAGACCTCCTTTTGTCAAAATGTCTctataaat
tttattacatgtgtACCAAAATAACACTTCTCTAAAATGGGGTGGTGGTA
AGCAAAAAAGTCTCGAAAATGCTTTTAGTATTCAGATATGCCTGATGATT
TAGTACCAACCCCACCCCCTGTATGAAGATGGCTGTAGAAATGATTacca
aatgttttgatatttttaatgaattgtattttctacaaaacaataataaa
ttttgatgtaaaatTTCTGACTTAAAAATATTAATATACGTCATAAAGGT
TTTCTGTTTAAATACTGgtattaaaaaaaagagaactttggccctttttt
ataagaattattaCTCTGTTAAAACTTTAACTTAATTTACTTCAGGTTGT
ATGTTTTGATCAATCAATCTCACCTTAAAGAATTTCCTTCACCCAAAAGG
TATGTCGATTTGCTTTGTTTTGTTCTGGTCAAAATAatcctgaaaaaaat
atttttaaaaatatgtttattttacaaaaaatgtatGATATAATATTcta
tttacaataaatttaaattGTGTTTGACTGCTAATGAACGAGAGTTATTA
TTGAAGATCACCAATTCGAGGCTAGGACTGGTTTTTTACGAAAAGCTGCT
CCTCCCAAAGCGTTTGCGAATGCAGCAACTTTCCCTTGCTCCATTCTTGA
ATCATAACCATTTGGGGTACGAGGTTGTGTTTTTGTTCGATTGGTTGGAT
GGTATGTTGCCCGGCGATGAAATTTCGGACTTGGTGTACCAACACATGTC
CGCTCTATTGGATattgtttcaaagaaaatgatcTTTTGAATTCTGTCCC
CGGCTGTCTTTCTTCGTCTTGCGTCTCTGATTGGCTACGAGAAAACTGGT
TGTTTACTTCTGATTGGTGAAAGCCATGCTTATTTGAATCTAATTGGCTT
CGGACGTGTTTGttcgaatctgattggctacGAGCGTGTCGATAGTCGAT
AACAAGAGGCTTGCGTTCGGCGTCTTTTTTCAACTGTTCgatctttttct
ctctttcttgTCGAAATTGTTCTTTAATGTTCTTTATAAATTCTGCTGAT
CGAGGTAAATAATCGAATGGTTCTTGAGTAGGCTCGATCGTTTGACTTCC
CCATTTTTTATGAAGATTAGCAGAATCGCCATTTTTTTCCTCCatctttt
ccaaattttccttCGTATGAACTGTTCCGGTTTTCACATACTCCGGTTGA
TACACCGGTATACAACGATATTTAACTGGATGGATTTCTGATGGAGTTAT
GggagtttttgtttgttttgtttttgaagctTGGTTTTCTTCACGATGAC
TATTCGTTTTATTTTCGGTAGTATTCGTTATTGACGAGTTTGTACCGAAG
TATCCGCTATCGAACGAGCAATTATCCGAATTCAAGCGACAATCTTGTTT
CTCGTTTTCGGTACCGTGATCTTTACTGGTCGACTTTTTGGTAGTTAAGA
AGACCTTGGTGCGGTTCGATTTGTTGTTCCCATGGTTACTATTGTGTGAG
ATGATTTTGACGGTTGTCTTTTTGTTGTTCGTACGTTCCATTTTCGCTGA
GTCAGCTGATTCTAAAGAATAAAGTATATAAGTTCATCAAAGATGCagaa
atttgtaaataatattAAAATTCGATTTCCAGATTGACTGAAAGCAAGAA
TTTTAGTTCATATTACATAATAAGGTCGAATAAAATCCTCCTAAAGCTCT
CTAAGTGTCTCAAAGTGCCTTTCCCGCTTGTCTCAAAAAGGGATACAAac
gttttattttataagcTAATTCTCATActgacttttttagttgcagtgaa
ttgaaaattgtgaagattttgtttcaaaattttgagaccACAGTTAAGGC
TCTGGAAACATTCATTTTTACGTTACCATTTTTGATTGTGCCAAAGCAAG
TTTTTGACTGTCTTTTTTTGCTAAAACAGTATGGGCCATTTCGTAATTAA
TTAATAGGAGAAACTTTATGACTGTTTAAATtgcttttgttaaatttgga
aatctaaaattgatttgaaagAGTGAGAACACTGGATCAATGAGAcaggt
ttgaattttttttttgaacggCACTAAAAATTTCACACGCATAGACGTTT
AGATATGTTCTAGCataattcgtcgaaaaattaagaacatcgtaagaaca
tgcccagcctcagttttgaaaaaaaaatacaagaaactacaattgttTCC
TCTTTTCAGGCAGTGTTAactgaacttagggatggattttctaaaatcga
gagtcagatattttccaaattttaccaattttaagtgctctttattttgc
atgatattgtcgatttagagtagtctgaaaaattaagaacgcatttaaga
acattttaggctgaaaatttctaaaaaaataagcacatccgggctcagcc
aaattttaggtgttctaataaaaagaaCGTGTACATCTAAATTCAGTTGA
GTTTTGTTGGATTTCTGTTGGAtgctcatttaaaaaaaagttgtttgttT
TTGTCACATGTTCGATGAAACTTTAgtctttaatcttttttttttgaaaa
ccccCTGATTAAATTTCATGAGTTGTTAACATCACTCTAACAGTTCATCT
CACTTTGACATCTCATCTAGCACCTTATCTATAGATAACATATTTTGTCT
TACCCATTATACTGAATAACAAACCTAACAtaaattatgttaattatttc
TAAATCTTTGATAGACAGATAACGCTTTGATatattatcttttcaaaaca
tttagcCTCTAATCTAATGAACTTTGGAACACAGGCTAGTCAAACTTTTT
TCGTGAACAGCGGCTATACTAAACTTTGATATACATTTTATACAAACATG
AATTAAAAATTGCTATTGTCTTTTTTTCATAACTTAATGATGAGGAGCTA
TAGAGATCACACATAGTAGAAAAAAACATCGAATTATTTGAATAGTCAAT
AGCCTATAGCGGGCAGATTATTTATGATAAAGGGGAGATTAACCCAAGTC
AAAACATAGAGATTATTTCTTGATGAGGTTCAAGTCAAgccaatttcttt
tttactGCGGTTTGTCTTTGCTAATACTTGATTAACATAAATTAGCataa
attatcaatttattcggttcaatttttttactcaatttggtcaaaatatt
tggGATAGTTCACACAGCACAAATTCTTTCCATtacaaacaaaactttta
acatTGAACACATTCCAAAAGTATAAAGAAAGATTTTAGACCTTATTTTC
TTATGAAATTCCATTTATTTAGTTCTAATATATAAATTCTGCTCAGATAA
ATATGAAGTTTAAAACTTTGAATACAGTGAAAACCATAAAGGAAGCCCAT
TGCCACACCCttttaaaaactgaaattgAGAAAATATTGCATGTTTCGAT
TGCCACACCCttttaaaaactgaaattgAGAAAATATTGCATGTTTCGAT
TGCCACACCCttttaaaaactaaaattgagaaaatattgCATGTTTACAA
CCATCAAAGGCTTCCTTTGTGTTTCTCATAAGAACTTCatctttttattt
acaaattaaatTTCACACATAATGTCATGAAAAATGAACGGTGGGGATTT
TTGGTACGTGTGTGAGTGAGAGGGGATCTGATCGTGCTTCAAGTATACTT
GTTGTATTTATCTCACGAGATAAAGTCATTATATTTACATCTGATGGAAA
AAATGTAACGAATTTCGTTGAACCAAAGTATTCGTAGAAAGTATTCAAAT
ATTGCTTTAAATTCTAAACCTTTTCAATTCATCTAACTTCAAAGTTGAAA
GATTTCTTAGCTTACTTTTAACTTACCACAGGCGAAAATCCCAAAATTGC
AAGTCTTCACTCTGTTAACAATTTCGTCTTAGCTACTTCTCAAGCTCTTA
TGACTTAATGAATACACTTGGCTTTCGCTAAAGGCTCATTCTCTAATTGC
AAAATTACCTTTAAATCTACCCACGTATTGCAGAATAAACATCACTGTCA
AGTTAATTATCATATCAATTACTTCTCAATCCTTCCTTAAACAAATATTA
CAAAACTTAACTTTCAAAATACCAAACGTCTGATTCAATGTCTGAAAGCC
CTACGATGGAGATCTGTACTATATTAAGCCCACTTCCTGGCAACTGTCAC
TCTAAATGCACTTCACCATCGTTCTCTAATGACGTTTGTTGACCCGCAAT
TTGGTCACCtttcgaaaattcgaaaaatttctaATTAGGAACTTAGGGTA
AGACCAGCCATTAAACCATTGTCTTTTCCAAAACAAACCTTAAATACTTG
AGTGTCATGAACTTTAGGGAAGCGATTTCACGTGTCGCGTGCTATTTTTC
AGATTCTGATTGGCTAGTGTATATGTTTGTGTTGTGTGTATGCGTGGTGT
AAAATATTGCTTAAATGCGGAAATGCGGAGTGTGTTTGCAAGTTTTGTAA
AATAGCAATTTGTGTTGGATTGACCCTTATTCAGTAGTCTCTTATACCAA
AGGAGGGCTCGGTATCAAAAGTCCAGAGTGTTAGTTGAATCAAAATATTG
TACTTGTTATGGCTTGCACAAAATGACAAAACAAAGTTCACCTTAAAGTT
AAAAACAACATTTAGCCTGCTGAATTGTTGATTGGACAAATTGCAAGCGA
GGGGTTAAGTTATGTTCTTTAAGAATCAAAAGTTGGTTAGCTTTGAAGAT
TTTAAATCACTGTTCAGTGTTAGTGGTTAGAGTCTGAGTGAAAAGGGTCA
ATCCATTTAAGAGATGTTATAACGTGCTTTCAGGAATCGATAAAAATGAA
TAATGTTGAATACGCGGTGGTTTAATCACAGTTCGTTTCGTATGTCCAGT
CGTTCGCTTACCTATAGTCTGATCTCTCTTTTCCTTGCATTCACCATTTA
CGATATCACAGCTCTCATTACACCTGTGTTTAGGTGCTAACATTTGTTCT
TCGCTCGGCCGCGCTTCCATTTTGTTATTAACGCCGTTTGTAATGTCAGT
TAAGGATcgtgtttgttgtttttctttatacgcTTTTTTCTTTCGTACGG
TAAAATTGAACTTCAATTGTAAGGGTTTCAGTGAAGTATGATGATGTGAT
GTAAGGTTCGATCGATTCTCATTCTTCTGATCACGGTTATACTGCGTAAA
CTGTTTCACGTTCAACTCTAATGTCTTTTTGGAGATTTTGATGGTTTTTA
TAGGTGTAATGTTACTGTTTGTCGAGGGGTTTGTCATGTCTGCGTTTAAG
GCTTTATCTACATTTTGCTTTCCCGAGTTATTGTTGACATCGCAGCCATC
ACAGCTATCGTTTGAAAATTCGTCATTATTTATCAAGGGCGGCGAGGGCG
TGCTGGAAATAGAAGAATCTGTATCATCCATAAACGCTCTTGGTTTTGAG
TCATAGCTATTAGTCTTTTGAAATTGTGGTGGCTGCCATTTGCTGCCCGT
CCCTTTGGGCGTTGTCGGGAGATTTTCATCGTTCGTGGTTTCTTCTGAGT
CATCACTGAGATGAGTTTTATTGATGCTTCGTACATTACGTAATATTTCT
TCGATCTCAGGGGTCTGGATGCGTGTCGAcacttcattcttttttctgTT
AGAAAATTGACGTATTCGGTCGGAGACGGATGAAGATCGTTCCTCTGACT
CCTCATTATTTGTCTGGTCTGTATTTTGCTTTTGTTGTTCAGGTGTACCT
GGTCTGTGAATTACACGTTTATGTTTACGTTGGTTGCGTGGTGACGGGCT
ACCATTTTGTTCACGTTTGCCATCTATGGAAGTGTGTTCTTCTTTGAGTG
GAGGTTGTTTGACAACCTTGGTGATCAACCAGCCAGGTACAGGCTCTTTT
TGCTCCTTCACATTTGGCTACaaaatgaaagaatatttaGATTAAGTAAC
AAATCTTTGGAAAGTAACGTTAATATTGTCCTAAATTCTTTTAGCACAAA
TTTTATCAACTATAATCAACTGTATAGATGAACTTAGAATGAACCTTTAG
CTTTGCCTGTTATACAGGTTTGCCAAAGTGGAAACTTTTAGAGCTCTTTG
AGGTTTCATTACGGCTCTGTTTCCATTTCAAAAGTTCGATAAAGCCATTT
CGTTGACTAGAATAATTTgttctgtgtgtgtgtgtgaaaAGCCAATATGA
TGGCTTCAGAACGATTTCTTTTCTGACTGGAAAAGAAGCGTAATATATAA
ACATGTTTTTGACTGTGACAACTGCATAAAGTTACTAACCCAGAACTGCC
TCCTTGGTGTATCAATCCACACCATAATTTATAAAGACCAAAGTTGTTTT
TTATTCTCAACGTAGTATCACCACTAGTGTTTAAACAAGTTACTGAACTT
TATGAGGGGACGTGTTTGTGGTTTATATAGTGGCCTCCAGATAAGTGACT
AGTAAATTCCATTAAAACTTTCATTGATTGAGAAAGAGATTCAATTACAT
CTCTTGATTGGTTTCCTCAGTAGGACAACTATCAACCAGCAGGAAAAATG
AGATCTCAAATCCCTTCGCCGCACACAAAAACTCTCTAGACGTCAAACAT
CACCCTTATGAATGACGTCATGTTTGGCTTTGGACGTTTTATGGATGTTC
ATAAGATCTTTGAGATTGACTCAAGCTGAGACGGTCTCGCCATCGGGATT
TTAGTTCGTGATTAAGTTTACTGTTTTTAATTGTAGAGACTTTTCATAAT
GTAATATTCATtcagtgtaattttttttcctacTGTTTGAAACTCATTAC
GAGTTTAATCTTAATCCCTTGTTTTCCTTTGTTTAATTAACGACCGCTCA
TTAAAACCATCCACAGTTTTAAGTATCTAAGTAAAGAGACATGATTCGTA
TTTTGTAACATACGTGATTCGGTATCAAAATCTATACATTTGATTTTTAC
CGTTTTTATTCTACCAAAAGTAGAGTTCTGAGATAGATTCCATGAAAATC
CTTAAGAAAGCCAATGGCCAAGACCAATGCATTGCGTTTTATTGCGACTT
TATGTAGAAAAATATCAAGCGGTCTTGAAACCGTAGTTTAAAGGTAATTG
AAGTCAACAAATTCTCTTTGAAACACCTTAAAGTGTCCTAACTAATTCTT
GAAAAACCtttaacaaaatgataaaattgtaTTTACAAGCACTTACCTCG
TGTGCGTCAAAGACATCCAGAGAcatttttcgatgtttttggTTCAACTT
TTCACCAGAATTTCTTCGTGGAGGTGTCACTGTTGATTGTTCAATGAATT
GAGTCACATCTATCGTTTTATCTCCATTACTCGGCGAACCAAGGAAATCT
GCACTGACATCAAAAGATTGTTTTCTAGTTACAATCCCTTTCGCACCCTT
TGGAAATAATTCCCTAGGGGAGGGTGACGCCGTTTCCGCTTTCTTTTTGA
TATTTGCCGCCATTTTTTCTAAGTCTCCTTTAGAATCACATATCAAACTA
TTCCGTATGCTTTCCACGATTTCTTGAGATTTCCGTAACTCGTTGACATC
AGCGGAGCTATTCGACCGTCTGTGTCCGCGCATACGAATCGCAGGATCTA
TAACTTTTAAATGATTGGAACTATTGTTTTTAGTATGTTGTTGATGTTTT
TCGTTTGTCGTATTATCTATGCTTACTTTTCGACGCGAAGTATCTGTATT
TTGTGTTTGGTCAATTAAAGTCACTACATTATCTTCTTCATCATCTGCAA
GGTTTTCTGTCTCACCGAGATTCGGATGTGACCTAGTTTTAGAGTCTATT
TTCTTCCCGCGGAACGTAAAGCGTTTAGGATGATGATTCCGAGTGTTTGA
GGTTGGTTGACTGTTTACATTTTCTGTAGATAAGTtcgattttttaataa
tttctaaTTTAGCGAAATGGTTCTCTTTAGCCTTCGAGCGTTCTTTCTTG
TTCTTCAGGTATCGATCTAGCCTAGCTACCAACAAATGATAAACTGCTGA
TGCGTGGACAGCCCTAAAAGGAAGAGAGAGATACAAAGGTTTATAAGGAA
TTCAAAGctatctgattttttttttgactagGTGGACTTAGTGAGTCCTC
TTTATTTATGTAAATTATTCAATATTTATCACTTAGAGATGACAAATCAA
AAGTGGAAAAAACATAAACCTTTTAGAGATTGAGGACTGTAGTTAGGAAA
GTGGATCTACTAGAGGTTTTATTCAGCTAACGGCTATCTTCGAAGAAGGA
AATACCTGTTTGATACAACAGCGTTTATGGTATCTTTAGTTCTGATCCGC
AATGTCATTTTCATGTAGGCGAGGACTGGCTCACAAAGTTCTTTCTTCTG
GTACATCATATCTCCAAGAGGTATGGAACGAGGAATGTATTCGGTCCCAG
TAAACCACTTGTGTTTCATGACTTGTTTCAGGGTGATTCTCCACTCGGCC
ACCGGTTCCAGTAAACGCATTAACAGATCACGGCATGCTAAAATGGATGA
TTTTCAAAAGAAGAGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008427-exon-sc0000085-1491911889:576652..576722 | TCONS_00008427-exon-sc0000085-1491911889:576652..576722 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1510915933:576652..576722 | TCONS_00008427-exon-sc0000085-1510915933:576652..576722 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1575043694:576652..576722 | TCONS_00008427-exon-sc0000085-1575043694:576652..576722 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1491911889:578197..578250 | TCONS_00008427-exon-sc0000085-1491911889:578197..578250 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1510915933:578197..578250 | TCONS_00008427-exon-sc0000085-1510915933:578197..578250 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1575043694:578197..578250 | TCONS_00008427-exon-sc0000085-1575043694:578197..578250 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1491911889:586233..586319 | TCONS_00008427-exon-sc0000085-1491911889:586233..586319 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1510915933:586233..586319 | TCONS_00008427-exon-sc0000085-1510915933:586233..586319 | Clytia hemisphaerica | exon |
| TCONS_00008427-exon-sc0000085-1575043694:586233..586319 | TCONS_00008427-exon-sc0000085-1575043694:586233..586319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:576652..586319 + |
Blast
The following BLAST results are available for this feature:
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