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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008425 ID=TCONS_00008425|Name=TCONS_00008425|organism=Clytia hemisphaerica|type=transcript|length=4094bpRun BLAST on NCBI transcript from alignment at sc0000085:551133..575716+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008425 ID=TCONS_00008425|Name=TCONS_00008425|organism=Clytia hemisphaerica|type=transcript|length=24584bp|location=Sequence derived from alignment at sc0000085:551133..575716+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008425 vs. Swiss-Prot (Human)
Match: XPO4 (Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2) HSP 1 Score: 494.197 bits (1271), Expect = 4.514e-152 Identity = 284/871 (32.61%), Postives = 502/871 (57.63%), Query Frame = 3
Query: 90 VVAEMEKAAAILMAHPGLVTSEERQHAEQLFLEFRKTKQPYEICQSILKSCTVEYVIFEAATTLKEAVIREWSLLEKSEVEQLCGFLLQTVTEKVEFPNFVREQILLAVAVIFKLGTLESPDARTNLINGLNELLTSGNKNMELICCSIMKALLTEYSTTSQSTNFGMSLDFHAKCKKTFEEKDLLNLFILTINALQKYTSAPISSLGREDIAILNRYLSLAEQIFLWEFMSGNPLLLLRFPHLNETASKLIFKPHKNWKEMMLNPNLIDMFFQLLQVTSSHNELSHHCFQCLIQLASVAGGVFGTDDMQLKYLSHYMNCLLNVVDKHEWSAHQASGLASIIFRLVDVFPMKIIRGISDDILNRLFEAMMFLTCMFLEKAATAPKDVLEDNE--YAEGSNTLLDAWITVISHSDDFPPDMFKKHSKVVVEAYIKCHLGAPEGIRPPD----AIDNEDLDHELSEKDRDFFSDELSNIGQFFRMNIRETVPLLKDKLNKRVDHLQ---EYLNYERMRKSNSTNGNNRIASDVLFEDLNWLLLIATFVLTVDTTGESAQVPNEIVDCSNDFLTSHQSCVASSVRYLTTIGKEGN----VAEVDPCVGLFTSVLRVVEIQNEFLNSNLVASYSPEIASTVLWFLKRWTRGYLPGYSAQLKNAPVL--SACFDVTKECGSLMLKVILETAELNLYCWTGEPDVTQDVSSLLLRIFHDKKRVGIALALPTVWTIVKKFSSFDQKIMSLSPKVQRNIIEALMQACMQVQDPKTKEEFQTQLLKPIMDNYLKVRQQDNFNRVSQNEEVKYTVIRTLECLRGIFPTCFASFSDTLFQYFQPLIEDTVALILIY----ESYTVIIVAILEIKTRQR-YVG 2642
V+A++E AA +LMA P +V +E+RQHAE +FL FRK+K P+ +C+ IL++ V+YV+F+AAT + EAV+REW LLEK +E L FLL V ++ +VREQILLAVAVI K G+L+ ++ + +++L++SGN ++ + CSI+ ALL+E+S++S+++N G+S++FH CK+ F+E+DL +F+LT+ LQ+++ +L + ++ RYL+LA Q+ W F+ N L + + E++ ++ KP ++W+E +L+ ++++FF + + ++++ QCL QLAS+ G +F + Q+ YL+H++ LLN ++ E +A G++SII L+ VFP ++ I ++ + + LTC F AA ++VL+ ++ Y E + LL++W+T++ F F +H+ V +YI+CHL AP+G R A E+ EL E DRD FSD+L+++G R+ +PLL L +RV L + + + S+ +N++ D L+ED++WL+L+ ++L DT GE+ +P EI++ S S + + ++++ L + G++ + D + L +++LRV E+++ + ++L SP++ ++WFLKRW + YL +L + L S F E ++ +L+ NL W+ E D+ D LL+ + ++R + + W + K+F+S + LS VQR +++AL+ D +TK+++ T++L+P+ +L+V Q+NF ++ Q EEVK + TLE L GI LF + + + + L+ +Y E+ +II +E+ +Q Y+G
Sbjct: 11 VIAQLENAAKVLMAPPSMVNNEQRQHAEHIFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKGSIESLRTFLLTYVLQRPNLQKYVREQILLAVAVIVKRGSLDKSIDCKSIFHEVSQLISSGNPTVQTLACSILTALLSEFSSSSKTSNIGLSMEFHGNCKRVFQEEDLRQIFMLTVEVLQEFSRR--ENLNAQMSSVFQRYLALANQVLSWNFLPPN--LGRHYIAMFESSQNVLLKPTESWRETLLDSRVMELFFTVHRKIREDSDMAQDSLQCLAQLASLHGPIFPDEGSQVDYLAHFIEGLLNTINGIEIEDSEAVGISSIISNLITVFPRNVLTAIPSELFSSFVNCLTHLTCSFGRSAAL--EEVLDKDDMVYMEAYDKLLESWLTLVQDDKHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVASREEEEISELQEDDRDQFSDQLASVGMLGRIAAEHCIPLLTSLLEERVTRLHGQLQRHQQQLLASPGSSTVDNKMLDD-LYEDIHWLILVTGYLLADDTQGETPLIPPEIMEYS--IKHSSEVDINTTLQILGSPGEKASSIPGYNRTDSVIRLLSAILRVSEVESRAIRADLTHLLSPQMGKDIVWFLKRWAKTYLL-VDEKLYDQISLPFSTAFGADTEGSQWIIGYLLQKVISNLSVWSSEQDLANDTVQLLVTLVERRERANLVIQCENWWNLAKQFASRSPPLNFLSSPVQRTLMKALVLGGFAHMDTETKQQYWTEVLQPLQQRFLRVINQENFQQMCQQEEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIGLMEVYKNTPETVNLIIEVFVEVAHKQICYLG 871 HSP 2 Score: 179.489 bits (454), Expect = 1.920e-45 Identity = 93/234 (39.74%), Postives = 143/234 (61.11%), Query Frame = 2
Query: 2774 KDFLDLGDTKE----------NEDSVSPVDIVLYGLQIVIPLITQELLKYPKLSSEYFKLVTFVCEVYPEKLKVLPEELFKSFMASIQMAISDLNTEVAKCSLDALSSLAKYLHNECDRNDPINLPLHNALLHFLNMVFEHIVLGHFNMELIEPAAECFFLLICCHQEEYLKLANNLIAKQHVTNETFKQRLIDAFQLLTPVGLQLSPNRQSLRQFRKNLETFLQNVKGFLCFK 3445
K+F+D DT E SVS D+VLYG+ +++PL++Q+LLK+P L ++Y+KL+TF+CE++PEK+ LPE+LFKS M S+++ ++ +++EV + L+AL+ LA+ +C + + PL A HFL +VF+ +VL N E+ A E F+ L+C HQ EY +L L++ Q + QRL DAF LT + +R+ F K+LE F+ NV G LC K
Sbjct: 924 KEFIDFSDTDEVFRGHEPGQAANRSVSAADVVLYGVNLILPLMSQDLLKFPTLCNQYYKLITFICEIFPEKIPQLPEDLFKSLMYSLELGMTSMSSEVCQLCLEALTPLAE----QCAKAQETDSPLFLATRHFLKLVFDMLVLQKHNTEMTTAAGEAFYTLVCLHQAEYSELVETLLSSQQ--DPVIYQRLADAFNKLTASSTPPTLDRKQKMAFLKSLEEFMANVGGLLCVK 1151 The following BLAST results are available for this feature:
BLAST of TCONS_00008425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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