TCONS_00008419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008419
Unique NameTCONS_00008419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008419 ID=TCONS_00008419|Name=TCONS_00008419|organism=Clytia hemisphaerica|type=transcript|length=1596bp
TAGAAATGCAAAAGATTAAACCCGTGATAAATGGATCAGTTTGGAGATAT
TGTGTTAAACTGGTCAGTTGGTTATGATGGATCACCAGTACATTTTCTGG
ACAACAAAACAATTTGTTATGTAAATGGAAATTGCATTAAAATTGTAAAC
ATTGAAGACAACTCAGTGAATTATTTACAATCCCCTGGGAATGGCATTGC
AGTACTGGCAGTCAATCCATTGTACGGTTATCTTGCGTTCAGTGAGAATG
GATTGAATGCTAATATTTATATCTACAATAAGAATGATCTGGTCAAGCCT
TCTCATACTTTACCAGgttttgataacAGTCTTGGTTATAAATGTATTTC
CTTCGCAAATAATGGCACACTACTTGCAACATGCACAGATATTCCTAATC
TGAAACTTTCTCTTTGGAATTGGCAAGAAGCTGAAGAATATTGCTCTTAC
gatcttcaaaatgaaaaatttgatgaaattattttcaatcctTTGGATTG
GCATCAATTGGCGTGTGTAGCTGAAAAAACTGTTCTTTTTTGGAATGTCG
AGAAAGTGAATGAAACATTTTATCTACAAAAGACGAAAATCGGGTTACCC
AAAAAAGATGGCACGTTTGGTTTTCAATTCTTGGAGGGAGATTCGGGAAG
CTCTATCTCAAGTCGTCCAACAACTGGTCACAAAAATTTAACTTTGACTC
AAACTGCAATTGCTGGGTTGACTGGAGAAGGCAAAGACAAATTTTTAGAA
GTAAACGATAAAGACAGATGCCATGCAACTTGTTTTTGTTGGCAACCAAA
TAACCAACTCTTGATTGCTTGTACTGGTGGAATGTTAATCAATTATGATT
GTGAAAATCAAAACGTATCTATCATTCATAACAAAGattCAAGCAATCAA
TTGGAGTTCAATAAAATTCAACTACGGAAAGATGGGTTATTCGCTTCTAC
TTTtGACGGTGATATTTATCAATTAACGCTTTCCAAAGATGATTTCCACG
TCAAATCAAGAGTTTGCACCAATCAAGTTGTGACCAATTTGAAGTTTTCG
CCAAACTATGAAACCCTGATGTTATCTGGAACGTCTGGTTCCATCTTGAA
ATTGGTTGGCGAAGAACTTTCACCTATCATTGAAGATAATTGTATTGGTC
AAATCATTGGGATCAGGAATGTTTCGGCTGCTCTCAAACATATTGCTGTT
GGAAGATCAGAAGGTTTAATCTCCATATATGAATATGCTGATGGAAAACT
TATTGGAAAATGTAACCTTGAATCTCAGTTGACGTGTTTAGCTTGTTCTC
CAACCTCGTCTACTGTATTCGTTGGAACAGCCTGCGGTTGCATTGTTGTT
ATCGATGTCACAGAGGCTGAATCACCCAGATGTGTATATCAAAAGAAGTT
ACACGAAGGACCTGTTAAATTCATCAAAATCGATGAAACAGGTACaatta
tgatgacgtcatcaacagATGGTCATCTTTTCTTTTGTAATCCAACCTTG
TCTTCACAATTCAACATCTTTGGGTATATCGatgtcAATGGCGAGGTGGT
TTGTATGGATATCAAAGCATTACGAGATGAAGATAGTGATCAGACG
Run BLAST on NCBI

transcript from alignment at sc0000085:492557..505938+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008419 ID=TCONS_00008419|Name=TCONS_00008419|organism=Clytia hemisphaerica|type=transcript|length=13382bp|location=Sequence derived from alignment at sc0000085:492557..505938+ (Clytia hemisphaerica)
TAGAAATGCAAAAGATTAAACCCGTGATAAATGGATCAGTTTGGAGATAT
TGTGTTAAAGTAGGTATTTACTATCATTCCTTTGTGTGGTTTGTGTTCTT
ATAGAATTTTGAATCCCTGAAATTTTGAATGACGGagtaaaattaataaa
ataaaggATAAATCCTGTTTATATACATCGTTTTTctgttttcaagattt
ttctaaaaaaggagTGAAATTATCAATTGaatcaaagttttattttaatg
ttttttttctgtagCTGGTCAGTTGGTTATGATGGATCACCAGTACATTT
TCTGGACAACAAAACAATTTGTTATGTAAATGGAAATTGCATTAAAATTG
TAAACATTGAAGACAACTCAGTGAATTATTTACAATCCCCTGGGAATGGT
ATTGCAGTACTGGCAGTCAATCCATTGTACGGTTATCTTGCGTTCAGTGA
GAATGGATTGAATGCTAATATTTATATCTACAATAAGAATGATCTGGTCA
AGCCTTCTCATACTTTACCAGGTATATTTCATCACATTTTCCCATTCAAA
GAATAATTTTACAATAAAACCTCTCAAACAAAAATCAGCTTATTTGTTTG
ATTAATTTCCAAACAATGGtagttttaaaaagtattttgtctttgaaatt
tttgaaaacagaaTGTAGATCTATCAAAGTGTAATTCTTcatctttaggt
tttgataacAGTCTTGGTTATAAATGTATTTCCTTCGCAAATAATGGCAC
ACTACTTGCAACATGCACAGATATTCCTAATCTGAAACTTTCTCTTTGGT
AAGTTTTCTATACTATACTCTAGTTGAACCAAAAAGAAATTGCAGATCGC
CTTTTTCTAATGATGCGCTTACTATTGACAAGGAATAATAAAAGGCTCTT
AATTATTAGGAGTTAAAAAGAGTTTACTTAAATTACACCCTAGGATTTTG
TTTACCATTATTTCAGAAGTTTAAGATATCCCAGATATCCCAAATAAAGA
CCTCTTGTTTCTAACCTATCAAATGtgacagttttgtttattttttatta
attatgtttCACTATAGGAATTGGCAAGAAGCTGAAGAATATTGCTCTTA
CgatcttcaaaatgaaaaatttgatgaaattattttcaatcctTTGGATT
GGCATCAATTGGCGTGTGTAGCTGAAAAAACTGTTCTTTTTTGGAATGTC
GAGAAAGTGAATGAAACATTTTATCTACAAAAGACGTAAGTAATGGAGGA
TGTTTTAAGATTGGAAAAGTATTATATCCAAATATTAGCTCACACCCAAG
GGATTTAGATATTTCCCCAGTGTGGAATCAtattatttccttttttaacc
ctttaagtgccaatgttgtatatatcagacatgggctatgtaggagggcg
aagccctcctgtaatgcccagtttgagttagaaatcgtcattttNNNNNN
NNNNNNNNNNNNNNNTTTCTAAAAAAGGAGTGAAATTATCAATTGaatca
aagttttattttaatgttttttttctgtagCTGGTCAGTTGGTTATGATG
GATCACCAGTACATTTTCTGGACAACAAAACAATTTGTTATGTAAATGGA
AATTGCATTAAAATTGTAAACATTGAAGACAACTCAGTGAATTATTTACA
ATCCCCTGGGAATGGCATTGCAGTACTGGCAGTCAATCCATTGTACGGTT
ATCTTGCGTTCAGTGAGAATGGATTGAATGCTAATATTTATATCTACAAT
AAGAATGATCTGGTCAAGCCTTCTCATACTTTACCAGGTATATTTCATCA
CATTTTCCCATTCAAAGAATAATTTTACAATAAAACCTCTCAAACAAAAA
TCAGCTCATTTGTTTGATTAATTTCCAAACAATGGtagttttaaaaagta
ttttgtctttgaaatttttgaaaacagaaTGTATATCTATCAAAGTGTAA
TTCTTcatctttaggttttgataacAGTCTTGGTTATAAATGTATTTCCT
TCGCAAATAATGGCACACTACTTGCAACATGCACAGATATTCCTAATCTG
AAACTTTCTCTTTGGTAAGTTTTCTATACTATACTCTAGTTGAACCAAAA
AGAAATTGCAGATCGCGTTTTTCTAATGATGCGCTTACTATTGACAAGGA
ATAATAAAAGGCTCTTAATTATTGGGAGTTAAAAAGAGTTTACTTAAATT
ACACCCTAGGATTTTGTTTACCATTATTTCAGAAGTTTAAGATATCCCAG
ATATCCCAAATAAAGACCTCTTGTTTCTAACCTATCAAATGtgacagttt
tgtttattttttattaattatgtttCACTATAGGAATTGGCAAGAAGCTG
AAGAATATTGCTCTTACgatcttcaaaatgaaaaatttgatgaaattatt
ttcaatcctTTGGATTGGCATCAATTGGCGTGTGTAGCTGAAAAAACTGT
TCTTTTTTGGAATGTCGAGAAAGTGAATGAAACATTTTATCTACAAAAGA
CGTAAGTAATGGAGGATGTTTTAAGATTGGAAAAGTATTATATCCAAATA
TTAGCTCACACCCAAGGGATTTAGATATTTCCCCAGTGTGGAATCATATT
ATTTCCTATTTTAACCCTTTTAAGTGCCAATGttgtatatatcagacatg
ggctatgtaggagggcgaagccctcctgtaatgcgcagtttgagttagaa
atcggcacttttggtctaactcgtaggaatcagattgggcttcatggcca
agcaaaaaaaaaatcaaaagtgagtcttttcagcaagattttaagctaaa
aatacaaaagaatgcaaaaatttgacaaaaatctacttttttaagatttt
gaccgttttttgaccatttttggtcaacgagtgatccaagaacctccaaa
tttggccctgattaacttgattctgtcctcaaGCGAaatagtttgaagtt
ttaccactcggCACAgctttctatcattcagtcaggtccgcacAGAATgc
gcctaaaagaaagaggagactctaagctatccaacggactataaacgagc
ttcttactccttctagatccggagatataagccttttaAGTTTGAACTag
tgattttctttaaaaaacttagaaaaaaatgaccgtggcattTAAAGGGT
TAAGCTCAACTCAGAATATGTACTAACATAAGCCTTTTTCTccctgtttt
ttttaatttttatcgaaatattctagtgtgatttttttattgttattttt
acagtcagtatttcaaaaaactagacatacttttttctttgttatatTCG
GGATCCAAAAGTAGTGCATTACTGATTTTTTAAGGCATAACATCTTTGTT
GACTTCTTTTGTCGTACCAATTTATAGCGAGACTTTGAGACAAATTTTAC
CAAGCTGTTTAGACTTAATTTaattaaaagattttcgaaaGACGTTATTT
TTACCTTACATTATGCTTTCTTTTGCAACAGGAAAATCGGGTTACCCAAA
AAAGATGGCACGTTTGGTTTTCAATTCTTGGAGGGAGATTCGGGAAGCTC
TATCTCAAGTCGTCCAACAACTGGTCACAAAAATTTAACTTTGACTCAAA
CTGCAATTGCTGGGTTGACTGGAGAAGGCAAAGACAAATTTTTAGAAGGT
AAGGATAGATATAATTTTAGAGCAAACAAAATCATTCATAAAGACATTAA
ATTTTAAAGTGAATACATTCTCTGATCATATGCTGCATACTGTCCAACTT
GAGTAATATGCACATTCACCATGgctagtttgagtaaagaaaacgacTTC
TTACTCAAAGTCTCATTCCATCcaggatggcaatcttcagtcaaaaaata
ttcaccaTAGCTATATTCTTTTAAATAATGGAGGGACTGAGTTTATGATG
AGATTTTCAAATAACAACAATGGCAAGAGAATGACGTAGTTCTCATTTCG
CTGATATTAAAAAGCTTGATTAATCATGGGCCCCGTCAACTGGGGGGCCG
GGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTCCATGGGCCCCTACTT
TTTGGTAGaccatgtcatacgtttttaagagttactattttaagctggtt
tgagaccaaatcaaaccaccaaaactattattctccccaattagatatcg
tttaaaggtgttttgagggtgtaaaaagtgaaaaaaaattcttcgtcgcc
caaccatggtgggcgacatttttttccaaaatgttggccccctcactcaa
aTGGCTCGGCGGGGCTCATCAATTTTGAACTTGATTGGCCTTACAATGTA
TGCTTTACTTTTTGAAGTCTGCTTTATTAACTTGTTTCGTGAACTCTGCA
CTGAAAATTTTATCACCTTTCAGTAAACGATAAAGACAGATGCCATGCAA
CTTGTTTTTGTTGGCAACCAAATAACCAACTCTTGATTGCTTGTACTGGT
GGAATGTTAATCAATTATGATTGTGAAAATCAAAACGTATCTATCATTCA
TAACAAAGGTCAGCTTGTATATTCCATTTTTTAATATCTCATGGTAAATA
TAACTTCTGTTCTCTGTTTCCTAATATTTCAGATAATTTGAATTGGTAAT
TAAACCGAAGAATCGGAGTTGAGGAGCTCCGGATATTTTTCTACGTCACT
AAAGTAATCAACTTTTTATATTGAAACACTCTTTTGTGAATTGATATTAT
AAGTTATTCAAAGGTAACAAATGcatgaatcctatgaaataggttAATTG
CTTCTAACCAGTCTTTCGTTTTATGGAGCGACGACCTAAGACGTCAGTTT
CATAAACCAGAGATTCCTCTTTCGAATTCCTGCACCTTTTGATGTTCTGT
TCAGTTCATTGGTAGCCGGGTTGCTGGCCTTGGGCTCCGcgatgaaaaca
atcagtcagaatgTCTGAAAGTCTTCAATTTTTGGGTTATTCACATAAAA
TGTCGACTCTATctatattttttgttataatAAAAATTCATTCAGTCTTC
TTCCGTCTCCATATGATGGCTTCTAGATTATGAATGAGGAAAAGTATTTT
TGATAGCCAACCCTACTATTGAATGATTGATGACATTTAAGATTCTTATT
CTGATAAAAGTCAATGACAAATTAGTAAGTGTTTTTTCTGTAGTATCACt
aattcttttttcttagattCAAGCAATCAATTGGAGTTCAATAAAATTCA
ACTACGGAAAGATGGGTTATTCGCTTCTACTTTtgtaagaaatcttttaa
agaaTCGATCTTTTTCTGTCATTCGTCATCCAATGGGCTGTTGCATTAAA
AACTATACATGGGGTGGATGAActttttcaaggcaaaaataatttattga
aaatgtgtggatactcCCTGGAAGATGGCGAAATTTGCAAAAGTgctctt
ggaaaaattcttctcATAcctaaagtgagggtggacgaaataaaatcagt
cttttaccccctggaaattttagtaTAACTTTTAACCCGCTTGGAAAAAT
GAtattgtccgcagtaatgatattattgttcaccctccttctatcattaa
atgatttttcgtagaTTTTAATTGCATCTCTCATTAAAAagcacttatcc
aattcccaaatgagactaaCCTTTCCTCCGAGAATCAAACTCAGCTAGTT
AATTGCTAATGAtctgtcgttatgacgttttaaaaattgcaaaaaagatg
caaaaacatgctgCGTATAAGAAATTGATATACCAGAAGTTTTCaaactc
tttttttcaaaaatttttgacctcAAAAAAACTGCCAcaacgtgccacca
aaagattttcataccacagtgaaGCTAGgagactcacgtctaatataTGT
AAAACTCAGCTGTTCTCGGAGAGATATTAGAAAGATATCCCCAACTGAAA
ATGTCGTGTCGTTATAACgttaagcattttgtttgattttactttggCTA
ACaatgtttttctcacaccagatttcataaatgtatccgCCTGGATAGCA
TTTAGcattttactttcaaatttttggccagcaaaagtacaaatataaaa
atataaaaaactttttagaaataagagtattaatcatttttcaaaatcag
agtccttcgagccgccatgacagggTTGtactttgcggacaaagcctata
tatcgattgttttctgaaacaatggaaagacaatacttcgctctccaccg
tacaccgtttcattcgatgttaaTCCAGAGTCTCCATAATAAATCCATGT
TCCtattaaaaagtgaattttcttaAAGAGTGTTTTCCATAGCTTTgttg
tattattttttaatagTCTAAAAAATGCCAGTACCTACTTtcttgaaaag
atttttggtttttaCTTTGTAATTTCAGGACGGTGATATTTATCAATTAA
CGCTTTCCAAAGATGATTTCCACGTCAAATCAAGAGTTTGCACCAATCAA
GTTGTGACCAATTTGAAGTTTTCGCCAAACTATGAAACCCTGATGTTATC
TGGAACGTCTGTAAGTCAACTTCACAGTCTGAATTTttcagacagacaga
cagacagacagggAATCTCATAATTGCAAAAACTTTTATAAAGGGTTAAG
GAAAATGAGAACTAGTGCTAAACCATGCTATATTAAGTGATGCGGTAAAA
ATAAAATGTGATGATCTGACTTCAAAAGAAACATTATAAAAAATCCTCTG
CTTTTTGCTCGAAAAAGACTAGGTTTTAATGTTAAGTTTTTATGATTGAT
GTGTAATTCTCTCTCGGTTTTCTTTCTGGGCTTTAAATTAAACCCTAAAT
TTCCCGATCAAAAATCGGATGACACACTCTTTCATTTCGCAAACCTAGTA
ACCCCCCTCCGGGGAACTGGTCGCTTGAAATCGATTCTGCAGTTGTTGCT
TCTTCGTTAACCACCACAGACATGCTTTTGAGATTATGGAACTTCATTTT
CTTTGTACCTAGGGTTCCATCTTGAAATTGGTTGGCGAAGAACTTTCACC
TATCATTGAAGATAATTGTATTGGTCAAATCATTGGGATCAGGAATGTTT
CGGCTGCTCTCAAACATATTGCTGTAAGTTGTTTTATTTCagacggaacc
gtaacgtctgaacatggtctaNATGAAACCCTGATGTTATCTGGAACGTC
TGTAAGTCAACTTCACAGTCTGAATTTttcagacagacacacagacagac
acacagacagacagacagggAATCTCATCATTGCAAAAACTTTTATAAAG
GGTTAAGGAAAATGAGAAACTAATGCTAAACCATGTAATATTAAGTGATG
CGGTAAAAATAAAATGTGATGATCTGACTTCAAAAGAAACATTATAAAAA
ATCCTCTGCTTTTTGCTCGAAAAAGACTGGGTTGTAATGTTAAGTTTTTA
TGATTGATGTGTAATTCACTCTCGGTTTTCTTTCTGGGCTTTAAATTAAA
CCCTAAATTTCCCGATCAAAAATCGGATGACACACTCTTTCATTTCGCAA
ACCTAGTAACCCCTCCCCCCTCCGGGGAACTGGTCGCTTGAAATCGATTC
TGCAGTTGTTGCTTCTTCGTTAACCACCACAGACATGCTTTTGAGATTAT
GGAACTNtgatttttgaaaaaaaaatttgggggtcaaatttgggccaaaa
actacctaaaaataaggttttttggacttggtgcaaagttgcttcattag
tttttcctgatttttgtcagaaagatagagtgcaaggtaccttaaaatgt
ggttgaagtaatttttctaggaacattttttttcgtcataaaattttcaa
aaaagacgaccaagttacacaatgataaaagaaaataaatcagacgtttt
tgcattgttgtaaaacttattgtgtttgctcaataccaatagtaaaatgt
agaatacctacttttatctgattttgatcaacaggtaggtccattcagca
tgttgcttgttttattataagaatacactttataagaatgtccatgatga
aaatggccaaaaaattaagaatatggtaagaatgtCACCATGATATGATG
CAACcaaatttagcaactgaacctaaaaatgccatttttaatgcatttta
acctgtagattgcaaatttcgatcttaacctaaagANTagacggaaccgt
aacgtctgaacatggtctagcTACGCTCTTTTCCGTAGCAAAAACCATAC
CGGAGCGAAATGAAACCGTAACGTCTAAACACGGTCTTAGAACCTGGGAG
AGATTTGAATTATTATGAAGTATCGTAGGATTGACATGAATAATATGGAA
TGTCAAATTATTTTCCAGGTTGGAAGATCAGAAGGTTTAATCTCCATATA
TGAATATGCTGATGGAAAACTTATTGGAAAATGTAACCTTGAATCTCAGG
TAGATaattatgaataaaaaattacgATTCAATACAGTATACTGCGGTCC
CTATAAGATGCTGGTGGCCTAACCAAAGATTGATTGTGATTTCCGTCCAG
ACTCATCAAACCTAcacgctttttggacctaccgggaggtcctttaattt
gaccgttgtccgttcgtctgttacaagcttttctcgggattggctcatta
gttttttttaattttttgcacaatgatacaaaatggcaatgcctgaaaag
tgacggagcccgatttttgaaaaaaaatttttggggggcaaatttgggcc
aaaaactacctaaaaataaggttttttggactttgtgcaaaattgcttcc
ttagtttttcctgatttttggcagaaagatagagtgcaaggtaccctaaa
atgtggctgaagtaatttttctcggaaaattttttttcgtcgNTTCTGAA
GCttttgttttcttcatttcattaaaaatttagTAACTTTTTTTTCAGTT
GACGTGTTTAGCTTGTTCTCCAACCTCGTCTACTGTATTCGTTGGAACAG
CCTGCGGTTGCATTGTTGTTATCGATGTCACAGAGGCTGAATCACCCAGA
TGTGTATATCAAAAGAAGTTACACGAAGGACCTGTTAAATTCATCAAGTA
AGGTTTTAATTTATGTCTaaagaaagtaagaaaaatctCATTcggatcaa
aaataaaattaaaattaaaaaatataaaaaaacgacCAAATCCCGTCAAC
AAATGCCTTCTCTTGCTGCAACATCTAACAAGGAAGAAAATGGAAATGAC
GCCGACCAATGCACGGAAAAGAACTGTATTAAAGATAACGATAATATGAG
AATTGAATGCCAAAAATGACAGAGGACAGTACATTATGATGCACTGGACT
TCCAACTTATCAATTAAAGCTGTTCCTGAATAAAGGATATCGTAAATACC
AGTGTATAAATTGCTGTTCAATTGATGAAGAACTGAATAAAAGATAACCG
ATCAATCTGTAAGAAAAGCTGCGCCGATAGCCACAAAAACAATAGTGAGA
ATGAGAGGAGACTGAGCTGTGTCGTTAAGGAGCTGCAAGCAAGATGTCAA
GGATATATGGCGAAAAACAGCAACGAATTAAACATATCAAATATCAAACG
GCTTCTCTGTAGTGAGAAAGTCGAAGAACAAATTGAAGAACAAAGAAAAC
AGTCTAAGGatgcccggggggggcactgggtttgcggactgacggtatgt
gcgggccaaaaattggcttttaaaattgcacccttacagtgcagcaaaaa
tcagtgaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCGT
GACAagctttattttaagaaaatattttttaaaagatcgGTTTAAGAGGC
CCATGCGCGCCTGAAACCTTATTTCTGtattaaaaaaagacaaaaaaaaa
cataagtaTCTCTTTCTTCAAAAGCATAAAATCATCAATTCACTCATCTC
TCTCAAAGAGTAAGTGATCGAGGTTCTGtgtttttctacattttttcgAG
ATATAAGAGGTTATTCTTCGAATATGAAATCAGGATCTTTTTCTTTTAGA
ATCGATGAAACAGGTACaattatgatgacgtcatcaacagATGGTCATCT
TTTCTTTTGTAATCCAACCTTGTCTTCACAATTCAACATCTTTGGGTATA
TCGgtaagtttttgattttgtttgtcAACTGTAATTGTTACgcactttat
tttttataagaatattcattaggtaattggccaaaaaattaagaaagtgc
taagaatatcaccatcattgaCTAGCAACGAAACCTTATAACAAGGCCTT
ATAACTTTATTTATATCAAGTATCTGATGAATCGTAGTAAAATCTCATCA
ttcaagccacgataaacttcaaTTATGTCTAGCTGAGCGAATAAAATCAA
TCTTATTCATAGCGTtctaaaatatctttattggaACTACGGCCACGAGT
aagttaaggccggtctccactttcgcatgaaatgagcgaaaaccttttga
catttttgtaaggtcattggccggttgaaaaatgaagcaattccatttgT
CGAAATTGACgcaacggatgaaaaaagtagaacttccttcaacttttttt
ttgttcgcgcgaaacttttttatgacgtaatcttttttttcaggcaaaaa
aggttaagaaaaaaactatcGCCCATTTTgcacgaaagtggagaccggcc
tttaaatTATACCTGCCATCAATTTAAGAGCGTTTACCATTACTTATTAT
GCACTGAAATATCTctctaaaaaaaaatatttttttaaagatgtcAATGG
CGAGGTGGTTTGTATGGATATCAAAGCATTACGAGATGAAGATAGTGATC
AGACGACTTGGAAAGTGTTGGTTGGTTTGAGCACATCTGGTCATCAACCT
GCTTCCAACCATCTTGTGGAAATGACCATCAATGAGAATCTAATGAAAGG
TATGTGCAGTTGACTATTATTCTCTTAAAATTGGACACATTGCCAATATT
TAGTTGAGGTTTGAATGGAGAAAGTTTAATGTATGTGAAATATCTGTCAA
AAGATAGTCAAATTAGTAAAATCCCAAACAGTGTAACCCgggtttatttt
taaaaaattggaagaaaatttgggCAGCGATTTTTTTAAAGTAAGCTTCA
TCTACTAATTTTTACCATATGAAATTTaattaaggaaaattttgattCAA
TTACAAGCTAAATTGAAATGCTATTAGGGTCTTTATGTTATGCAGGCAAA
TAGATTatcttttaattgaatcgaattGAATTGTTAAAAGTTCCCGCCTT
ATTGAACTATAGAGGCTTTTCCTcgcaaaattctgcataattcaccaaaa
gttttaaactagccatagctttcactaactgccacccgctagtacaaata
cttgtaaaaaactaattaattcttattaagactttttaatgctttatagc
aaaAGTCTCGAAATGATTTGGtatagttagaatgattcttctcagcattt
tctttgagatatcaatgaataagctaacataaatgaaacttatttttttt
ctaaaaatgtgaattactttttacaaagaataaagtacgaatcttaaaac
attcattaggaaaagtgtccaggtagaatcaattacagacagttacagat
actaaaccagtcaaaagacatgcaactNgtttttgtaaggtcattgaccg
gttgaaaaatgaagcaattccatttgTCGAAATTGACgcaacggatgaaa
aaagtataacttccttcaactttttttttgttcgcgcgaaacttttttat
gacgtaatcttttttttcaggcaaaaaaggttaagaaaaaaactatcGCC
CATTTTgcacgaaagtggagaccggcctttaaatTATACCTGCCATCAAT
TTAAGAGCGTTTACCATTACTTATTATGCACTGAAATATCTctctaaaaa
aaaatatttttttaaagatgtcAATGGCGAGGTGGTTTGTATGGATATCA
AAGCATTACGAGATGAAGATAGTGATCAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004718XLOC_004718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008419-exon-sc0000085-1491911889:492557..492615TCONS_00008419-exon-sc0000085-1491911889:492557..492615Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:492557..492615TCONS_00008419-exon-sc0000085-1510915933:492557..492615Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:492557..492615TCONS_00008419-exon-sc0000085-1575043694:492557..492615Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:494087..494343TCONS_00008419-exon-sc0000085-1491911889:494087..494343Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:494087..494343TCONS_00008419-exon-sc0000085-1510915933:494087..494343Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:494087..494343TCONS_00008419-exon-sc0000085-1575043694:494087..494343Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:494521..494620TCONS_00008419-exon-sc0000085-1491911889:494521..494620Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:494521..494620TCONS_00008419-exon-sc0000085-1510915933:494521..494620Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:494521..494620TCONS_00008419-exon-sc0000085-1575043694:494521..494620Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:494890..495057TCONS_00008419-exon-sc0000085-1491911889:494890..495057Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:494890..495057TCONS_00008419-exon-sc0000085-1510915933:494890..495057Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:494890..495057TCONS_00008419-exon-sc0000085-1575043694:494890..495057Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:496038..496204TCONS_00008419-exon-sc0000085-1491911889:496038..496204Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:496038..496204TCONS_00008419-exon-sc0000085-1510915933:496038..496204Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:496038..496204TCONS_00008419-exon-sc0000085-1575043694:496038..496204Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:497780..497914TCONS_00008419-exon-sc0000085-1491911889:497780..497914Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:497780..497914TCONS_00008419-exon-sc0000085-1510915933:497780..497914Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:497780..497914TCONS_00008419-exon-sc0000085-1575043694:497780..497914Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:498573..498640TCONS_00008419-exon-sc0000085-1491911889:498573..498640Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:498573..498640TCONS_00008419-exon-sc0000085-1510915933:498573..498640Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:498573..498640TCONS_00008419-exon-sc0000085-1575043694:498573..498640Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:499785..499916TCONS_00008419-exon-sc0000085-1491911889:499785..499916Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:499785..499916TCONS_00008419-exon-sc0000085-1510915933:499785..499916Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:499785..499916TCONS_00008419-exon-sc0000085-1575043694:499785..499916Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:500369..500479TCONS_00008419-exon-sc0000085-1491911889:500369..500479Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:500369..500479TCONS_00008419-exon-sc0000085-1510915933:500369..500479Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:500369..500479TCONS_00008419-exon-sc0000085-1575043694:500369..500479Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:501725..501805TCONS_00008419-exon-sc0000085-1491911889:501725..501805Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:501725..501805TCONS_00008419-exon-sc0000085-1510915933:501725..501805Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:501725..501805TCONS_00008419-exon-sc0000085-1575043694:501725..501805Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:502305..502453TCONS_00008419-exon-sc0000085-1491911889:502305..502453Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:502305..502453TCONS_00008419-exon-sc0000085-1510915933:502305..502453Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:502305..502453TCONS_00008419-exon-sc0000085-1575043694:502305..502453Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:503956..504059TCONS_00008419-exon-sc0000085-1491911889:503956..504059Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:503956..504059TCONS_00008419-exon-sc0000085-1510915933:503956..504059Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:503956..504059TCONS_00008419-exon-sc0000085-1575043694:503956..504059Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1491911889:505874..505938TCONS_00008419-exon-sc0000085-1491911889:505874..505938Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1510915933:505874..505938TCONS_00008419-exon-sc0000085-1510915933:505874..505938Clytia hemisphaericaexon
TCONS_00008419-exon-sc0000085-1575043694:505874..505938TCONS_00008419-exon-sc0000085-1575043694:505874..505938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:492557..505938 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.327932	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00008419 vs. Swiss-Prot (Human)
Match: CFA43 (Cilia- and flagella-associated protein 43 OS=Homo sapiens GN=CFAP43 PE=2 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 4.886e-61
Identity = 147/528 (27.84%), Postives = 256/528 (48.48%), Query Frame = 1 
Query:   43 GDIVLNWSVGYDGSPVHFLDNKTICYVNGNCIKIVNIEDNSVNYLQSPGNGIAVLAVNPLYGYLAFSENGLNANIYIYNKNDLVKPSHTLPGFDNSLGYKCISFANNGTLLATCTDIPNLKLSLWNWQEAEEYCSYDLQNEKFDEIIFNPLDWHQLACVAEKTVLFWNVEKVNETFYLQKTKIGLPKKDGTFGFQFLEGDSGSSISSRPTTGHKNL----TLTQTAIAGLTGEGKDKFLEVND-KDRCHATCFCWQPNNQLLIACTGGMLINYDCENQNVSIIHNKDSSNQLEFNK------IQLRKDGLFASTFDGDIYQLTLSKDDFHVKSRVCTNQVVTNLKFSPNYETLMLSGTSGSI-LKLVGEE--LSPIIEDNCIGQIIGIRNVSAALKHIAVGRSEGLISIYEYADGKLIGKCNLESQLTCLACSPTSSTVFVGTACGCIVVIDVTEAESPRCVYQKKLHEGPVKFIKIDETGTIMMTSSTDGHLFFCNPTLSSQFNIFGYIDVNGEVVCMDIKALRDED 1584
              + + W  G+    VHF+++ TICY  GN +  +NIE      LQ     + V+A N     +AFS+  L   IY+Y+   L + +  L G +  L Y  +SF+  GT LA+ + +P  +L+LWNW+ +   C         +++ FNP++W QL   +  TV  W +E+ N+    +   + LP +DG+F   F E D        P +  K+L     L  +AIAGL G+  + F   +D     H T  CW P + L I C  G L+  + +   V++++  +  + L+         +  +K+G+ AS  DG +Y   +    + ++  +   + V ++ FSPNY  L++    GS+ +   G+E  L+ ++ D C G+   I  ++   ++       G I ++   D   + K  L +  T LAC P+S +  VGT  G +  I V + ESP+ V++  L E  V+ +  D+ G  ++  + +G +F  N   SS F I G+ +V  +++ +   +L + D
Sbjct:   17 ASLSVRWVQGFPKQNVHFVNDNTICYPCGNYVIFINIETKKKTVLQCSNGIVGVMATNIPCEVVAFSDRKLKPLIYVYSFPGLTRRT-KLKG-NILLDYTLLSFSYCGTYLASYSSLPEFELALWNWESSIILCKKSQPGMDVNQMSFNPMNWRQLCLSSPSTVSVWTIERSNQEHCFRARSVKLPLEDGSF---FNETDVVF-----PQSLPKDLIYGPVLPLSAIAGLVGKEAETFRPKDDLYPLLHPTMHCWTPTSDLYIGCEEGHLLMINGDTLQVTVLNKIEEESPLDRRNFISPVTLVYQKEGVLASGIDGFVYSFIIKDRSYMIEDFLEIERPVEHMTFSPNYTVLLIQTDKGSVYIYTFGKEPTLNKVL-DACDGKFQAIDFITPGTQYFMTLTYSGEICVWWLEDCACVSKIYLNTLATVLACCPSSLSAAVGTEDGSVYFISVYDKESPQVVHKAFLSESSVQHVVYDQQGIFLLVGTAEGKVFIINANSSSSFQIIGFTEVAKDILQISTVSLLETD 533
The following BLAST results are available for this feature:
BLAST of TCONS_00008419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CFA434.886e-6127.84Cilia- and flagella-associated protein 43 OS=Homo ... [more]
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