|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008415 ID=TCONS_00008415|Name=TCONS_00008415|organism=Clytia hemisphaerica|type=transcript|length=5681bpRun BLAST on NCBI transcript from alignment at sc0000085:489571..526915+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008415 ID=TCONS_00008415|Name=TCONS_00008415|organism=Clytia hemisphaerica|type=transcript|length=37345bp|location=Sequence derived from alignment at sc0000085:489571..526915+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008415 vs. Swiss-Prot (Human)
Match: CFA43 (Cilia- and flagella-associated protein 43 OS=Homo sapiens GN=CFAP43 PE=2 SV=3) HSP 1 Score: 762.681 bits (1968), Expect = 0.000e+0 Identity = 547/1685 (32.46%), Postives = 894/1685 (53.06%), Query Frame = 2
Query: 74 GDIVLNWSVGYDGSPVHFLDNKTICYVNGNCIKIVNIEDNSVNYLQSPGNGIAVLAVNPLYGYLAFSENGLNANIYIYNKNDLVKPSHTLPGFDNSLGYKCISFANNGTLLATCTDIPNLKLSLWNWQEAEEYCSYDLQNEKFDEIIFNPLDWHQLACVAEKTVLFWNVEKVNETFYLQKTKIGLPKKDGTFGFQFLEGDSGSSISSRPTTGHKNLTLTQTAIAGLTGEGKDKFLEVND-KDRCHATCFCWQPNNQLLIACTGGMLINYDCENQNVSIIHNKDSSNQLE----FNKIQL--RKDGLFASTFDGDIYQLTLSKDDFHVKSRVCTNQVVTNLKFSPNYETLMLSGTSGSI-LKLVGEE--LSPIIEDNCIGQIIGIRNVSAALKHIAVGRSEGLISIYEYADGKLIGKCNLESQLTCLACSPTSSTVFVGTACGCIVVIDVTEAESPRCVYQKKLHEGPVKFIKIDETGTIMMTSSTDGHLFFCNPTLSSQFNIFGYIDVNGEVVCMDIKALRDEDSDQTTWKVLVGLSTSGHQPASNHLVEMTINENLMKGASSLFLDDTKKLKDISIQKKTFVLKSYIYDVIV-VNNSTAFGLVHQGKRVVKYNLDDQDQSATPGTNAVLDASVTYPAHALPGGQIVLSCHSRWLMTSSPDGVFIMRAVGAMNNKVPVQAANYREGGIDFAQLSPDAQQILVVSRT-GIVTSWKWNYTSLGKSKATVAIETCKSLLGEIRDVRNKEDSLIKKMKKIDLPSELGGEQE------------------------TWLHQAVQKSRKKEDEKYKTTKNNLKNEINNLRKQVLDMMSTNDQLPDIEKLDRFEFNMDTEERNALLVGREQLLKELRAESELKDTAQQYLWSLLKKECWDGMVTKGKNIIGFHSTIQVENYAMRERTPEEIEELDYVTQQLRIEQIEKGSRKANQPPEVSSYPSLLERQEDTQDGDDDAS--DIKNETASTY--GSLAYNYGVANDLVQSQFTLHTRNQKKSQIALLKDCVYKIKQDFNKSFNEVYNVKQQEMKRINERNTRIQKILKDLDXXXXXXXXXXXXXXXXXXXFTVHDNEITVEKYVSEEEKQRFEEIAKLEEERRLAENADNLRGRALDMMMAGRLETGIEDELKKEVEVPEFMDKPLERWTEDEHKLAKEYEQKKIELSEEREKYRKSLETELKKLQTTNVDSTNNFDERLLLLFQKKIKTKAVILQEELKIVRLAASIXXXXXXXXXXXXXXXXXXKKKEEKQQSSLAVGDARRAVEQFKDSYEMLVADDKTLDKMFRKEFSELDTHTIDVLYRLFKKRPRAQRTLKAAFENQNDIISTTPYDKGNPFQQRPXXXXXXXXXXXNLERAMLELDNEQHMPENVDIETWKRLIMLRRTKVEKEQQLKSNALVMADLNSFLQKKLDRDEELKFQVEKAFXXXXXXXXXXXXXXXXXXVQLLLKQGQIEVGNCKYVPDYTDSVLIHRSAIEDLNAVIKTLGEAKLSSMHESKEFRKGIHLLAWQLKEMFMRAEDFQSAAQDLQLLRVTKELQGYLGETDQRQSKNQEITTLEKTIEKYSAMHNRKVSDKKRTIRRLKRQIREKMDQNHKFDDDLEDLALNVAERTQISKKTGGDEK-QGVHDHAMKNIIMRRKFVDLAKTQASQIGVLRAEVERLRMRTFPALLQL 5005
+ + W G+ VHF+++ TICY GN + +NIE LQ + V+A N +AFS+ L IY+Y+ L + + L G + L Y +SF+ GT LA+ + +P +L+LWNW+ + C +++ FNP++W QL + TV W +E+ N+ + + LP +DG+F F E D S P L +AIAGL G+ + F +D H T CW P + L I C G L+ + + V++++ + + L+ + + L +K+G+ AS DG +Y + + ++ + + V ++ FSPNY L++ GS+ + G+E L+ ++ D C G+ I ++ ++ G I ++ D + K L + T LAC P+S + VGT G + I V + ESP+ V++ L E V+ + D+ G ++ + +G +F N SS F I G+ +V +++ + +L + D + VL L +G +EM L+ S+ F D+ +LKD I K + L+ + ++ ++ +G Q + Y L +++ + +L + G + LS H WL+T + G+ +R V + ++ +++ GI ++S D Q ILV R G + KW G A+ ++ + LL + +KE+ + K+ + +LG + E W+ Q Q++ KKE + + +K I +L K +L+MM ND+L +I KLD+ EF +D EE L ++ + ++ + E+ + A+ YL L+K+ECW+ M KG+ + FH VEN+ M+ RT EE++EL+ V QQ +IE RK + E S L++++ + D +++ +K Y GSL+ ++GV L+ SQ LH+R +K +QI LLKD +YK+K FN F+ Y K+ E+ R+ ERN RI++I+ DL+L E + + E E+PE V D EIT K++ K + E I E+E L + R RAL MM G LE ED L+ + P FM KP WTE+E K K+YE+K EL+EER+KYRKSLE ELKKLQ + +ST FDE L LF++++K + V QEELKI LA S+L+DEEL + E L L +K+ EK Q+S AV +R ++ K+ Y+ L+A+DK +D+ F+KEFSE+ H +D+LY+LFK+RPR + + ++ S P F + P S + A A L +AM ELDN +MPE +D W M RR KVE EQ++K A + ++ +FLQK+++ +E+++ ++E+ F E+ L+EE++RF LNL +Q+LLKQGQ+E+ N + V +Y+D++LI+++ IEDLN+VI+T G+ K++SM ESK+ K I + W+ K+M M ED A D+Q+L +++ Q YL E + + +I +E+TI MH + V + K+ +++L + +K N+ +L + + V+ER I G + + +N++ ++K +++K QA QI +L+ EVERLRM+TFPAL+Q+
Sbjct: 17 ASLSVRWVQGFPKQNVHFVNDNTICYPCGNYVIFINIETKKKTVLQCSNGIVGVMATNIPCEVVAFSDRKLKPLIYVYSFPGLTRRT-KLKG-NILLDYTLLSFSYCGTYLASYSSLPEFELALWNWESSIILCKKSQPGMDVNQMSFNPMNWRQLCLSSPSTVSVWTIERSNQEHCFRARSVKLPLEDGSF---FNETDVVFP-QSLPKDLIYGPVLPLSAIAGLVGKEAETFRPKDDLYPLLHPTMHCWTPTSDLYIGCEEGHLLMINGDTLQVTVLNKIEEESPLDRRNFISPVTLVYQKEGVLASGIDGFVYSFIIKDRSYMIEDFLEIERPVEHMTFSPNYTVLLIQTDKGSVYIYTFGKEPTLNKVL-DACDGKFQAIDFITPGTQYFMTLTYSGEICVWWLEDCACVSKIYLNTLATVLACCPSSLSAAVGTEDGSVYFISVYDKESPQVVHKAFLSESSVQHVVYDQQGIFLLVGTAEGKVFIINANSSSSFQIIGFTEVAKDILQISTVSLLETDIVEVM--VLSSLPEAGRSR-----LEMFTLPTLLPQVSTTFADERGRLKDEIIHKYLYELEHALSSAVLGFQSNQIYGFCSQVPYICSYLLPEEEHTGI----YILKPYKKVQSRQYGPGLLYLSSHGLWLITIAKCGILCIRDVYTLETFAWCRSHSHQGHGIQSMRISMDGQNILVNGRDDGTLVYLKWK--RFGGHLASEILDYYQKLLISLSSAMDKENHYLSTTPKVSV--DLGSDSEHTKQKASTDLSQDELVLTDVKKEIPWIQQKSQEAIKKEVNLFSKKRKEIKQGIKSLSKTILNMMEENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKMIKDVEMHNLAKSYLAELIKEECWNSMAVKGRALKCFHIPCVVENFPMKARTVEELKELERVLQQKKIEAECLKLRK--EIVEAQSGVKLIKQRHEEDDEEEEEEDKTVKYSNLPNYLLGSLSTDFGVDTSLLSSQLELHSREEKINQIILLKDIIYKVKTVFNNEFDAAYKQKEFEIARVKERNVRIREIILDLELEEAVWQPEFEDCEKPERTLVVQDEEITAHKHIKPWHKAK-ELIVNHEKEHWLLIQDASTRLRALMDMMGGVLEVKKEDILRMVIPQPAFMAKPDAVWTEEERKQFKDYEKKVKELNEERDKYRKSLEAELKKLQNSIQESTQAFDEHLKRLFERRVKAEMVTNQEELKISNLAFSLLLDEELSSREKFLNNYLTRKQHEKSQTSEAVRKSREDLDVCKEHYDNLLAEDKVMDRSFKKEFSEIPGHQVDILYKLFKRRPRISKQ-----KTHSETTSVVP------FGELPGSGKLNKDAFAQLMKAMDELDNISNMPEGLDPLVWNHFCMTRRAKVENEQKVKQKAADLLEMATFLQKRVEEEEKVQQEIERVFHELILLQEEKVRFQLNLTIQILLKQGQVELENFQLVLEYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKDVHKRILQIEWEHKKMEMEREDLNQKAWDIQMLFFSRDRQKYLNEPNYEALISIQIGIMEQTIAVLDKMHKKNVENCKKLLKKLGKFSNQKDIANYALSCNLREELVAVSERKDICNAMGSKLTCEKIVKERYENMMQQQKLTNISKQQAEQISILQTEVERLRMKTFPALVQM 1665 The following BLAST results are available for this feature:
BLAST of TCONS_00008415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.