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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008396 ID=TCONS_00008396|Name=TCONS_00008396|organism=Clytia hemisphaerica|type=transcript|length=2590bpRun BLAST on NCBI transcript from alignment at sc0000085:173451..178232+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008396 ID=TCONS_00008396|Name=TCONS_00008396|organism=Clytia hemisphaerica|type=transcript|length=4782bp|location=Sequence derived from alignment at sc0000085:173451..178232+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008396 vs. Swiss-Prot (Human)
Match: MLH1 (DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1) HSP 1 Score: 803.127 bits (2073), Expect = 0.000e+0 Identity = 412/815 (50.55%), Postives = 543/815 (66.63%), Query Frame = 3
Query: 84 IQKLDEVVVNRIAAGEVIQRPANAIKEMIENSLDAKSKSIQVTVKDGGLKLLQIQDDGCGIRKEDMHIVCERFTTSKLASFDDLKSIATYGFRGEALASISHVAHLTITTKTGDSPCAFKAKYEDGKMVPLQVGGKVEAKACAGNKGTQITVEDLFYNVAVRRKALRNTNEEHAKIVDVISKYAIHNPSVGFSLKKVGNSVGDVRTSPKSTVIDNIKTIYGPTLSKELLEVTHEDTQYAFKMHAFVSNANYSIKKCTLLLFINHRLVESTALRKALDAVYVNYLPKDKHPFMYMSLELNPINLDVNVHPTKHEVKFLHEEAIIESIQKCVETKLLGSNESRQYYTQSLIPKMLSAGVDCPVADIVQGNQSDKNNNANEGESEKKKLYAHQMVRTDAREQKIEAFF-PYKAQVKSPTQCSKVTEETVNQTSHVNKENVETDGASNATILTVDSELHGNEHSNTSNQNGIPDDQSGGHLTEVNELPREERKENGSEGATTINLLQDEEGDVQMKDVEQNTRRGDEHSNNTHQKRPAADVKQPVAKSSSKISSTACD--ERTMKLTSIRNLRRQIEDNEHLGVKKILEEHKFVGCVNRSLALMQHLTQLYLVNVQNLSQELFYEIIIFRFGNFGYLELSEPAPIFELVRLVLDTPESGWEPEDGEKDELAKYTVDLLKSKADMLMDYFSVEINEQGELTAIPLLLSNYTPNWNKLPLLMLRLASEVDWDNEQQCFHDFAIELSDFYST-----------GGSKQQTEDEDEGEWKHQIEHLIFPALRNTFIPPKRFSNDGCFLEVANLPDLYKVFERC 2486
I++LDE VVNRIAAGEVIQRPANAIKEMIEN LDAKS SIQV VK+GGLKL+QIQD+G GIRKED+ IVCERFTTSKL SF+DL SI+TYGFRGEALASISHVAH+TITTKT D CA++A Y DGK+ K K CAGN+GTQITVEDLFYN+A RRKAL+N +EE+ KI++V+ +Y++HN + FS+KK G +V DVRT P ++ +DNI++I+G +S+EL+E+ ED AFKM+ ++SNANYS+KKC LLFINHRLVEST+LRKA++ VY YLPK+ HPF+Y+SLE++P N+DVNVHPTKHEV FLHEE+I+E +Q+ +E+KLLGSN SR Y+TQ+L+P G+ P ++V+ S +++ + K+YAHQMVRTD+REQK++AF P + S Q + VTE+ + +S ++ E E+ ELP A Q EGD E + +RG SN + R +DV+ V S K + AC R + LTS+ +L+ +I + H ++++L H FVGCVN AL QH T+LYL+N LS+ELFY+I+I+ F NFG L LSEPAP+F+L L LD+PESGW EDG K+ LA+Y V+ LK KA+ML DYFS+EI+E+G L +PLL+ NY P LP+ +LRLA+EV+WD E++CF + E + FYS G + + WK +EH+++ ALR+ +PPK F+ DG L++ANLPDLYKVFERC
Sbjct: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKL-------KAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLP-----GLAGPSGEMVKSTTSLTSSSTS---GSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQ-AIVTEDKTDISSGRARQQDE----------------------------------------EMLELPAP---------AEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHREDSDVEM-VEDDSRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIVYKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756 The following BLAST results are available for this feature:
BLAST of TCONS_00008396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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