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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008389 ID=TCONS_00008389|Name=TCONS_00008389|organism=Clytia hemisphaerica|type=transcript|length=3341bp
TTTTAATATAAGGTAGAATTTGAACTAAACATGGATTTTTTAGtgctgaa
tattttttttgaattctttgtttagatttttctacccagccctgtTTTTA
AGTATCCACGTCCTGCTGCTAAGAGCTTTGCTTGAAATTAGAAAGTGACA
CCTAATTATTTAGGACAGGACTTCCATGCGACATTTTGTCCAGTAtaatt
taataatatttttcagcACTGGACAAAAACACTAGAAAGTTTGGTGTGTC
AACAGGGTCGTCTGAAGACGTCTTAAAGAGAGTACAGAACCTAGACTGGT
ACAATCACCCCTTTCTTCTGCAATCTACAACAGTCTACTCAGAATTTCTA
ATGTTTTGACAATAGGATGCTAGCATTTGCAGCTCCTTTACATTGGTTGG
AGTAGCATGttattgtaactttttttttcagggtGTATTTTAGAACATAT
AGTAGACAGAACTTTTTACAAATCTTAAAAATGTTTACTAGTTTTCAAGT
TTAGAAGTATTTAAGAAaacaattatttatttttaatatacCAGTTTGGT
CTCTCAATATTTATATAGCTGTTATCTCAACAAAATGGTGGCCAAAACCC
AGCAAACAGTTTCCAGGAAGACTCGAGGTAAACCAAAATCTGGACGGGTT
TGGAAATCTCAAGGGCAAAAGAAATCCACTATGATCAACGTCAAATCTTT
ACATCCGTCATGGAGCAAAAGATCTAAAGAGCGTGCAGAACGAGAATCTG
TAAAGAAATATCAAAAGGAACTGAAACTTTCTTGCCATTGCAGTggagaa
agaagaaaaacggATAAGGATTGAAGAGAATCGAAGACGTAGAGAAGAAA
ATGCTAAGAAAGctgaaattgttcaaaaaattactgattcatcaaaaatt
aaacgaatgaaaaagaaacaattGCGACTAATTGAAAAGCGCTAATGCTC
ATTCCCCTAGAAGATTATTTGACAAAAAAGTGTACAAAGACATGGTTCAC
TAAATAGAAAGATGGAAGTGGAAACACAGAAGTTATAAAGATGCGTTTGT
TGACGAAATGGAAAGGGTGTGGAACTAGGAACGAAAGAAACCTCAATTCA
CAAAACGGAACTAGTCTTTATTATTTACGAGAGTTGACCCAGGTCGCCTT
TAATTATGAACTTTACCAACAAATCAGAGTGATGTTAATTTTCGAATATC
ATGTCACATTCCTTTGACCCGCATTCAGAAATACCATGACCATTTTTGTG
CAACAGTGCAACAGTCTACTTCTGTTtgcaaaagaaataattttttgaaa
aatcttttaactAAACCATTAAGTGATTTATTACTGGTAGTTTGGTACTG
ACTTCTTTTCatactttttgaatttaaattgtCAAGGCAGGTTGCTACTT
ATTGTTCTAACCTATACCATTCTTTTTCTGTctgttttataaaataaaat
aagatgCTTCAAACTTGAATCTAATACGATCTTTAATATTAGTTATTTTT
GAATGGTTTTAGATTTTAAGGattcatttttgtaaaatcagctTTATAAA
TTTGTTTCATATTATTGAAGTGAAATATCAGACATAAATGTTGAAGTAAA
GAGTTTTTCTTCGTTTTGATTACATGATTGAGCAACATttaatttttgtc
catttttcttctttctttcaatagataaataatataaaatgacATCCTCA
GTGACGCAGCTTACAAGATCAATATTCAGAAAAAGTGGTAAAATTTTATC
AAGGCACACAACTTCAAAACGCTTGTTCCATTCCACTCTGCCAGTTCTCT
CAGATCGCATCGAGAAACATACAGTACAAGATGCATCTACCTTCTTGAAT
AACATGCTACTCCAATGTAAAGGAGCTGCCATATTTGCCGGGACTGGTCA
ATATCACGAAGAGAAAAACCAAGATCGTTTAGTGATGTTGAATTTCGTGG
ATGATTTTCTTCAAGATTcatcaatcaatgtttttgacAGCCaagaactt
ttggattgttgtTTAAGAGATTCTGATGTTGATTTATTGATCAATAGTTT
GAAAGCTCACTCCAAATTTCCGGTGTATAATGGTGAATTGGATATAGTGG
ATACTTCTTCCTGGCAGCATGGCTTCACATTGAAACCGTTCAGTATATTT
ACACCAGTGGAACGCATTCTCTTATTCAACGATGGGAAACTGTATGTTAA
TACCTTAGGAGATGTGCAAACTGTTCCCATTGAGGATATAGAGTATGTCG
GGCTCTGGGTTTCAGACGAACCATATAATGAACGTCGCTTACTTCTTGGC
TTGAaaggacttcaaacaaaaatgttGTTGAGTTTGGAACGTGATTTAGT
ACACTGCGACATGGCCAAATTGACTCTGGATACTGAGTGGATGATGAAAG
CTGCTGCATTGTTGTGTGTTCACATCAGTCAAGCTGGAAATTCGAACATC
TACCTCAAAGTGTCGCCATGCTTACAACCTATCAACAATGAATGGGTTGC
TATGCGACAGAAGATTTGGATGGAGATGATTCAAAAGAACACTTGGGGTG
ATAAGAAGAACGACGACGACGATTAAAAATGaattctttgtttcttttac
CGTTCgtcttttctgttttgtttcaTTATGTTCGTTCGTTGCAATGCCCT
TTGgtaaaattgtattttctttcttttggtgttttggtgtttctaCTTTA
ACGTGTTTCGAGTCTTTTTTTTATACAAGAACActaaatttgaacttttt
acGACAACATGAAGTCTttattgaagcgtttgggtgagacaaatttaatt
tatcgTTCTTACTCAGAAAAATATGGATCAGTTGGTCGGTATTATAATAA
ATTGCTTAAAATGTAAAGTCGGAAGGTCAAGATCTAAACATCTGTGACGT
TTCGACTTTTCCTTTTTATCAATGAGCGGCGTTGTAGCTATTTCCATTTT
GATATTCTAAATTTATCTAAGTTCTGAGAtgaatacacattttttttcaa
cttgttcAATCAAAAATATCTGCAAAATTCCTTCCTTGGAAATTCAATAc
tattattttttcgaaaattggatcGGTCTAgcccgtagaacaataaattt
ggtctcgccttatttttgcttttgaatCTAGAGGTTCATCTGGGTCTTTA
GTGGTTTGGCTTGTCAAAACAcaacaattcaattttttaaatgttttgag
tTACAGTagaatttattttaatttgaaatattgttaCAGCAATTTGTATT
TAgtcgattttgaaatttttatgtttatagtttggtattttaatttaaat
ttaagttttctttgTTCCTCTTCTTATCCTTTTGTCCTTTT Run BLAST on NCBI transcript from alignment at sc0000085:149085..152425+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008389 ID=TCONS_00008389|Name=TCONS_00008389|organism=Clytia hemisphaerica|type=transcript|length=3341bp|location=Sequence derived from alignment at sc0000085:149085..152425+ (Clytia hemisphaerica)
TTTTAATATAAGGTAGAATTTGAACTAAACATGGATTTTTTAGtgctgaa
tattttttttgaattctttgtttagatttttctacccagccctgtTTTTA
AGTATCCACGTCCTGCTGCTAAGAGCTTTGCTTGAAATTAGAAAGTGACA
CCTAATTATTTAGGACAGGACTTCCATGCGACATTTTGTCCAGTAtaatt
taataatatttttcagcACTGGACAAAAACACTAGAAAGTTTGGTGTGTC
AACAGGGTCGTCTGAAGACGTCTTAAAGAGAGTACAGAACCTAGACTGGT
ACAATCACCCCTTTCTTCTGCAATCTACAACAGTCTACTCAGAATTTCTA
ATGTTTTGACAATAGGATGCTAGCATTTGCAGCTCCTTTACATTGGTTGG
AGTAGCATGttattgtaactttttttttcagggtGTATTTTAGAACATAT
AGTAGACAGAACTTTTTACAAATCTTAAAAATGTTTACTAGTTTTCAAGT
TTAGAAGTATTTAAGAAaacaattatttatttttaatatacCAGTTTGGT
CTCTCAATATTTATATAGCTGTTATCTCAACAAAATGGTGGCCAAAACCC
AGCAAACAGTTTCCAGGAAGACTCGAGGTAAACCAAAATCTGGACGGGTT
TGGAAATCTCAAGGGCAAAAGAAATCCACTATGATCAACGTCAAATCTTT
ACATCCGTCATGGAGCAAAAGATCTAAAGAGCGTGCAGAACGAGAATCTG
TAAAGAAATATCAAAAGGAACTGAAACTTTCTTGCCATTGCAGTggagaa
agaagaaaaacggATAAGGATTGAAGAGAATCGAAGACGTAGAGAAGAAA
ATGCTAAGAAAGctgaaattgttcaaaaaattactgattcatcaaaaatt
aaacgaatgaaaaagaaacaattGCGACTAATTGAAAAGCGCTAATGCTC
ATTCCCCTAGAAGATTATTTGACAAAAAAGTGTACAAAGACATGGTTCAC
TAAATAGAAAGATGGAAGTGGAAACACAGAAGTTATAAAGATGCGTTTGT
TGACGAAATGGAAAGGGTGTGGAACTAGGAACGAAAGAAACCTCAATTCA
CAAAACGGAACTAGTCTTTATTATTTACGAGAGTTGACCCAGGTCGCCTT
TAATTATGAACTTTACCAACAAATCAGAGTGATGTTAATTTTCGAATATC
ATGTCACATTCCTTTGACCCGCATTCAGAAATACCATGACCATTTTTGTG
CAACAGTGCAACAGTCTACTTCTGTTtgcaaaagaaataattttttgaaa
aatcttttaactAAACCATTAAGTGATTTATTACTGGTAGTTTGGTACTG
ACTTCTTTTCatactttttgaatttaaattgtCAAGGCAGGTTGCTACTT
ATTGTTCTAACCTATACCATTCTTTTTCTGTctgttttataaaataaaat
aagatgCTTCAAACTTGAATCTAATACGATCTTTAATATTAGTTATTTTT
GAATGGTTTTAGATTTTAAGGattcatttttgtaaaatcagctTTATAAA
TTTGTTTCATATTATTGAAGTGAAATATCAGACATAAATGTTGAAGTAAA
GAGTTTTTCTTCGTTTTGATTACATGATTGAGCAACATttaatttttgtc
catttttcttctttctttcaatagataaataatataaaatgacATCCTCA
GTGACGCAGCTTACAAGATCAATATTCAGAAAAAGTGGTAAAATTTTATC
AAGGCACACAACTTCAAAACGCTTGTTCCATTCCACTCTGCCAGTTCTCT
CAGATCGCATCGAGAAACATACAGTACAAGATGCATCTACCTTCTTGAAT
AACATGCTACTCCAATGTAAAGGAGCTGCCATATTTGCCGGGACTGGTCA
ATATCACGAAGAGAAAAACCAAGATCGTTTAGTGATGTTGAATTTCGTGG
ATGATTTTCTTCAAGATTcatcaatcaatgtttttgacAGCCaagaactt
ttggattgttgtTTAAGAGATTCTGATGTTGATTTATTGATCAATAGTTT
GAAAGCTCACTCCAAATTTCCGGTGTATAATGGTGAATTGGATATAGTGG
ATACTTCTTCCTGGCAGCATGGCTTCACATTGAAACCGTTCAGTATATTT
ACACCAGTGGAACGCATTCTCTTATTCAACGATGGGAAACTGTATGTTAA
TACCTTAGGAGATGTGCAAACTGTTCCCATTGAGGATATAGAGTATGTCG
GGCTCTGGGTTTCAGACGAACCATATAATGAACGTCGCTTACTTCTTGGC
TTGAaaggacttcaaacaaaaatgttGTTGAGTTTGGAACGTGATTTAGT
ACACTGCGACATGGCCAAATTGACTCTGGATACTGAGTGGATGATGAAAG
CTGCTGCATTGTTGTGTGTTCACATCAGTCAAGCTGGAAATTCGAACATC
TACCTCAAAGTGTCGCCATGCTTACAACCTATCAACAATGAATGGGTTGC
TATGCGACAGAAGATTTGGATGGAGATGATTCAAAAGAACACTTGGGGTG
ATAAGAAGAACGACGACGACGATTAAAAATGaattctttgtttcttttac
CGTTCgtcttttctgttttgtttcaTTATGTTCGTTCGTTGCAATGCCCT
TTGgtaaaattgtattttctttcttttggtgttttggtgtttctaCTTTA
ACGTGTTTCGAGTCTTTTTTTTATACAAGAACActaaatttgaacttttt
acGACAACATGAAGTCTttattgaagcgtttgggtgagacaaatttaatt
tatcgTTCTTACTCAGAAAAATATGGATCAGTTGGTCGGTATTATAATAA
ATTGCTTAAAATGTAAAGTCGGAAGGTCAAGATCTAAACATCTGTGACGT
TTCGACTTTTCCTTTTTATCAATGAGCGGCGTTGTAGCTATTTCCATTTT
GATATTCTAAATTTATCTAAGTTCTGAGAtgaatacacattttttttcaa
cttgttcAATCAAAAATATCTGCAAAATTCCTTCCTTGGAAATTCAATAc
tattattttttcgaaaattggatcGGTCTAgcccgtagaacaataaattt
ggtctcgccttatttttgcttttgaatCTAGAGGTTCATCTGGGTCTTTA
GTGGTTTGGCTTGTCAAAACAcaacaattcaattttttaaatgttttgag
tTACAGTagaatttattttaatttgaaatattgttaCAGCAATTTGTATT
TAgtcgattttgaaatttttatgtttatagtttggtattttaatttaaat
ttaagttttctttgTTCCTCTTCTTATCCTTTTGTCCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008389-exon-sc0000085-1491911889:149085..152425 | TCONS_00008389-exon-sc0000085-1491911889:149085..152425 | Clytia hemisphaerica | exon |
| TCONS_00008389-exon-sc0000085-1510915933:149085..152425 | TCONS_00008389-exon-sc0000085-1510915933:149085..152425 | Clytia hemisphaerica | exon |
| TCONS_00008389-exon-sc0000085-1575043694:149085..152425 | TCONS_00008389-exon-sc0000085-1575043694:149085..152425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:149085..152425 + |
Blast
The following BLAST results are available for this feature:
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