TCONS_00008378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008378
Unique NameTCONS_00008378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008378 ID=TCONS_00008378|Name=TCONS_00008378|organism=Clytia hemisphaerica|type=transcript|length=2404bp
TTCAACATAATATCATTTTTGAACGATTTTGATAGAAACCGCGCTTCGTC
TGCTATAAACAATATGTACAAGAAACCAAAAAAAAGCAAGAATACAAAAA
ATAATACAGCTAGAGGAAAATCACTTAAAAGACAATTTTCCAAAAGGAGG
CATCAAGATCTTCTTTCCCTGACTGCCacaaacgttttttcaacgtccat
ttaacgttagatagACGTTGCGTGGACGATTATATGTCAGCTGGGTGACC
GAGGTGAAAAAAGAACAACCCCTCAGTTCAAAACTTTATAgatttaaaag
ttaaaagttttAAGGGAcgtaaaagcaaaagaaaaaattgaaaggataAT
TATGAATAACTTTCAAATACGAACGTATAAACACAATTCAACTCGAAAAA
TGAAGTAATCTAAATCAAATATTTGTAATCAGATTCAAATTTCTTGagat
tcaaaaaatacaaagaaattcaCCAAAAAAAGCGCAAGTTTGAACAGAAA
ATAAGTAACAAAACTGTCAGTTTAATGAAAGTgaattaaaaaattgtaaa
tgaCATTTTTGCATGAGATATGAGAAGAGTTTTGGAGGACATAAATTTCC
CCCTTTGCTCTACTCTTCATATTAATAATACTTCTACTAAATGAttcttt
tagattttgaaagGTTACAAAAAAAGTCGCAATAAATATTACtaagtttt
gttttaaaaatttctgcAAATACAATATAACAGATAGAAATTTTACTACT
ATAATAAAGTGTTCCATGTTCTTCCACTAGCCCCTATTTATCTGTTTAGA
TTTTAAACAATATATTCTTTCTATCTCGATTCCCAACCTACTTTTTTGTA
CACAAGGCAGCTAAAATATTCGAAATGTTCATGATATCAATCTCATTTCT
TTCCATCACAAATTATACAACATAGTTGTGTCAAAATGTCCATCGTGTAA
ACCAGGTCTAAAGTTTCATCTCCATCTGTCGCTAATCAACTTTTCCAGGT
ATAGAACGACACAAAAATAAATCCTCCTTAATCTCAATCCAGCTGAAATT
AAGACGTAAAATATAcccattgaaaaaaattttcgttttttgttttACAG
TAATCCAGTTTTTTCATTGAAGAGGCAAAAACACATCCTGCTGTTTCCTT
CACCCTCGAGACCAGGGCGGCCGCCTTTCATCTGTTTCCAGCACCTGTCA
GTATAtccttataaaaagaatttttccctGCACACTCTCGTCATCTCACC
CAATTTTGTCCCGCCAGAGGAAAGGAACCTGCTGAATTCTGCATATTGGT
ATTATTGTTTGTATCGTTGCTACCTGTACTTCCAGGTCCGCAATTATTGG
CGGGAAAACCTCTGAAAACTCCCTGTTCAGTTTTCATGATGGCGTCAACA
TCAGAGGCTAACTGTTGTTGATCACCGAAATCATAAAGTTTGACTTGAGA
TAAATCGTCAGGAATTTCAGTATCAAAAATGTTCACAGTTGGGGCATTGG
TTTTCTTCATGGAGAATTGTGGTTGTGGTACCTGCTGCTGTTGAAAAGAT
TGTTGGTTTAACGTCACATTATGCGAAAAATGAGTCGAGTTCATTTGCTG
CATATTTTGTGGTTGTGCTACTGTTTGATTGTAATTGTTGAACGGTCCGT
TTGTTTGCATGCTTTGTGGACTGGGTACAAATTGTTGAGCTTGCATTGGG
AGGTGTGTAAGACGCGGTGCGGTCACCATGTGGGTGTTGATGCCCATCCT
ATTGGCTTGTTGtgcattttgtgcttgttggtAAGGGTTGTTCATCATTC
GTTGTTGTTGGTTTTGATACATCTGTTGGTTCTGTCTGTTCATTTGGTTA
ACGTATGCTTGATTGTAAGGAGGTGGTGGTTTGTTTGGTACGTTTGGAGA
AGGTAGTTTCCCCATGTTTCCACGGTTCTGCGCACCTGGTTGATTGGGAG
GTGAGAAGTAAGCAGGGCTTTCGTAACCGGAATCGGCTGATGAACCACTA
CCGAAGGAATCAGAATGTGGACGTCTCGGTGGAAGTAAAGGATCGGTGTT
AGTGACGGCGACTGTTGGATAATTCATGTCGTTTGTCTTCATGATTTTCA
ATGAATCAGTACTGGAGCAAGGTGATCCAATATTGAAAAGGTTATCGAAG
GAGCGATTCTGCTTGAATTTCATGGTATTTGGTGATAAAGCAGAAATGTC
GTCAGTGCTTTGGTGTAATTTCTTGGTTCGTCTTTTCTTGCCATCTTTAG
GCTGCCCGTCGATCGATCCTGATCGTCTGCGATTTGATTTTCCTGGTTTA
GCATCAGGGTTTATGACCCAGTATGAACTCTTTCCATTGTTATCATTCTG
AACTCTCATGAAACGACTGTGAAGCGACAAATTGTGACGGATCGAATTCT
GAAT
Run BLAST on NCBI

transcript from alignment at sc0000085:9690..12408+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008378 ID=TCONS_00008378|Name=TCONS_00008378|organism=Clytia hemisphaerica|type=transcript|length=2719bp|location=Sequence derived from alignment at sc0000085:9690..12408+ (Clytia hemisphaerica)
TTCAACATAATATCATTTTTGAACGATTTTGATAGAAACCGCGCTTCGTC
TGCTATAAACAATATGTACAAGAAACCAAAAAAAAGCAAGAATACAAAAA
ATAATACAGCTAGAGGAAAATCACTTAAAAGACAATTTTCCAAAAGGAGG
CATCAAGATCTTCTTTCCCTGACTGCCacaaacgttttttcaacgtccat
ttaacgttagatagACGTTGCGTGGACGATTATATGTCAGCTGGGTGACC
GAGGTGAAAAAAGAACAACCCCTCAGTTCAAAACTTTATAgatttaaaag
ttaaaagttttAAGGGAcgtaaaagcaaaagaaaaaattgaaaggataAT
TATGAATAACTTTCAAATACGAACGTATAAACACAATTCAACTCGAAAAA
TGAAGTAATCTAAATCAAATATTTGTAATCAGATTCAAATTTCTTGagat
tcaaaaaatacaaagaaattcaCCAAAAAAAGCGCAAGTTTGAACAGAAA
ATAAGTAACAAAACTGTCAGTTTAATGAAAGTgaattaaaaaattgtaaa
tgaCATTTTTGCATGAGATATGAGAAGAGTTTTGGAGGACATAAATTTCC
CCCTTTGCTCTACTCTTCATATTAATAATACTTCTACTAAATGAttcttt
tagattttgaaagGTTACAAAAAAAGTCGCAATAAATATTACtaagtttt
gttttaaaaatttctgcAAATACAATATAACAGATAGAAATTTTACTACT
ATAATAAAGTGTTCCATGTTCTTCCACTAGCCCCTATTTATCTGTTTAGA
TTTTAAACAATATATTCTTTCTATCTCGATTCCCAACCTACTTTTTTGTA
CACAAGGCAGCTAAAATATTCGAAATGTTCATGATATCAATCTCATTTCT
TTCCATCACAAATTATACAACATAGTTGTGTCAAAATGTCCATCGTGTAA
ACCAGGTCTAAAGTTTCATCTCCATCTGTCGCTAATCAACTTTTCCAGGT
ATAGAACGACACAAAAATAAATCCTCCTTAATCTCAATCCAGCTGAAATT
AAGACGTAAAATATAcccattgaaaaaaattttcgttttttgttttACAG
TAATCCAGTTTTTTCATTGAAGAGGCAAAAACACATCCTGCTGTTTCCTT
CACCCTCGAGACCAGGGCGGCCGCCTTTCATCTGTTTCCAGCACCTGTCA
GTATAtccttataaaaagaatttttccctGCACACTCTCGTCATCTCACC
CAATTTTGTCCCGCCAGAGGAAAGGAACCTGCTGAATTCTGCATATTGGT
ATTATTGTTTGTATCGTTGCTACCTGTACTTCCAGGTCCGCAATTATTGG
CGGGAAAACCTCTGAAAACTCCCTGTTCAGTTTTCATGATGGCGTCAACA
TCAGAGGCTAACTGTTGTTGATCACCGAAATCATAAAGTTTGACTTGAGA
TAAATCGTCAGGAATTTCAGTATCAAAAATGTTCACAGTTGGGGCATTGG
TTTTCTTCATGGAGAATTGTGGTTGTGGTACCTGCTGCTGTTGAAAAGAT
TGTTGGTTTAACGTCACATTATGCGAAAAATGAGTCGAGTTCATTTGCTG
CATATTTTGTGGTTGTGCTACTGTTTGATTGTAATTGTTGAACGGTCCGT
TTGTTTGCATGCTTTGTGGACTGGGTACAAATTGTTGAGCTTGCATTGGG
AGGTGTGTAAGACGCGGTGCGGTCACCATGTGGGTGTTGATGCCCATCCT
ATTGGCTTGTTGtgcattttgtgcttgttggtAAGGGTTGTTCATCATTC
GTTGTTGTTGGTTTTGATACATCTGTTGGTTCTGTCTGTTCATTTGGTTA
ACGTATGCTTGATTGTAAGGAGGTGGTGGTTTGTTTGGTACGTTTGGAGA
AGGTAGTTTCCCCATGTTTCCACGGTTCTGCGCACCTGGTTGATTGGGAG
GTGAGAAGTAAGCAGGGCTTTCGTAACCGGAATCGGCTGATGAACCACTA
CCGAAGGAATCAGAATGTGGACGTCTCGGTGGAAGTAAAGGATCGGTGTT
AGTGACGGCGACTGTTGGATAATTCATGTCGTTTGTCTTCATGATTTTCA
TTGAATCATTCAAATTAATGGAAGCCATGTTTCGTTGTTGTGCTTGTTGC
TGTTGGTGATGTGTGTTAGGGTCGATGTACATTGACTCCACCATGTTGGC
TGTTTCCTCTGCGCCAGGGACTTGCTTTTGCAATAAGTTGGATTGCTCCA
GCTGTGCGATGTCTGCGTCGATATCAAGTTGTGTTGGTGTCATGCGACCA
CTAACACTTGAGACATTTGAGACATTGGAGGTGGATCGTGGACGACCGAA
TGCTTCACCATTGTATGGGAATCCTCCTCCCATTTCTACACCATGGTAAT
CATCAATGTTGGACAATGAATCAGTACTGGAGCAAGGTGATCCAATATTG
AAAAGGTTATCGAAGGAGCGATTCTGCTTGAATTTCATGGTATTTGGTGA
TAAAGCAGAAATGTCGTCAGTGCTTTGGTGTAATTTCTTGGTTCGTCTTT
TCTTGCCATCTTTAGGCTGCCCGTCGATCGATCCTGATCGTCTGCGATTT
GATTTTCCTGGTTTAGCATCAGGGTTTATGACCCAGTATGAACTCTTTCC
ATTGTTATCATTCTGAACTCTCATGAAACGACTGTGAAGCGACAAATTGT
GACGGATCGAATTCTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004706XLOC_004706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008378-exon-sc0000085-1491911889:9690..11788TCONS_00008378-exon-sc0000085-1491911889:9690..11788Clytia hemisphaericaexon
TCONS_00008378-exon-sc0000085-1510915933:9690..11788TCONS_00008378-exon-sc0000085-1510915933:9690..11788Clytia hemisphaericaexon
TCONS_00008378-exon-sc0000085-1575043694:9690..11788TCONS_00008378-exon-sc0000085-1575043694:9690..11788Clytia hemisphaericaexon
TCONS_00008378-exon-sc0000085-1491911889:12104..12408TCONS_00008378-exon-sc0000085-1491911889:12104..12408Clytia hemisphaericaexon
TCONS_00008378-exon-sc0000085-1510915933:12104..12408TCONS_00008378-exon-sc0000085-1510915933:12104..12408Clytia hemisphaericaexon
TCONS_00008378-exon-sc0000085-1575043694:12104..12408TCONS_00008378-exon-sc0000085-1575043694:12104..12408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:9690..12408 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10687	0.777982	0.217608	0.134339	45.2444	31.5264	24.0955	22.6577	14.4006	24.716	12.1384	18.2698	59.6685	46.4874	37.2008	37.0056	16.9338	25.6927	25.9167	27.8721	29.0763	28.4979	15.5472	14.449	12.7688	14.9522	28.922	32.4962	13.6455	12.2175
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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